AT1G07310

Protein kinase C conserved region 2 (CalB)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001015
Physical Location & Seq
Reverse (-)
2247112 .. 2248961
1850 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G07310.1

Sequence Viewer

Length: 1059 bp
ATGACTTCGTCGGAGCCACTCGACCTGGTTGTCACCGTCGTCTCTGCCAAGCACCTGAAGAATGTCAACTGGCGTAACGGTGACCTGAAACCCTACGTTGTTCTGTATCTTGACCAAGACCACCCTCTCTCCACCCGCTCCGATGATTCCTCCTCCATCAAACCGGTGTGGAACGAGCGGATTACTCTTCCTCTCACCCGATCTGTCCACGAATCGGTCCTCAACATCGAGGTTTTTCATTCCAATTCTTCGGATCTGGCGAAAACCCTCGTCGGATCGGTTAGGTTTCCTCTAGCTCGTTTGATTGACTCGGACGGGTCAATGATTCCGGAATTGATCAACTCGCTCGAGCTGGTTCGTCCATCGGGTCGACCACAGGGGAAGATTCGTTTGAAGCTCGCGATCAAAGACAGACCAATCCCTCCACCGCAGCATCCTCCGCCACGTCCTCAATCTCAACCACTAGATTACTATTCTGCCCCTCAAGGAAACCATTATTACTCCCCTAGCCCTCCTCCTCCTCCTCCTCCTCAAGCACCGATCACCGCTCCATCTCCTCAGCGTGACTACAGAGAATTCTCACAGTCACCGTCTCCGTCTCCTTACGCATTCACTGATCACTACTATTCCGGGTATTATTATCCGCCTCCTCCACCACGTTCAATGTACGATCGTGCCTCCAATTACGGCCTCCCAAGTGGCCCATCTGCTCCCGTTGATGCCTTCTCATCGATTGATCACAAGCAGCCTCCTTTAGCTCCTCCTCGGTTTTCTAACTACGGTCCACCGCCTAGTGGGCCCTCAGCACCCGTTGATGCCTTTCTGGTTACCGAGTACAAGCCACAAGCTCCACCTATGGGCTCGCGATTGTCTAGCTACGGAGTGCCTAATGGTCCATCGGCACCAGTCGATTACTCTCCTTATGATCACAGGCAGTTGCAGAAGACGATGGGTGGATTGAGCTTAGAGGAAGAGAGAGCTGCTGCAGAGAGGTCTGAGAGTGATTTCGGAGCTAGGCCAAACTACAGCTATGGCCGTGATTATCGCCGTGAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

352

Amino Acids

39.01

Weight (kDa)

7.13

Isoelectric Point (pI)

76.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 9 - 104 1.3e-15 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 29
AccB1I GGYRCC 1 cut(s) 901
AccBSI CCGCTC 3 cut(s) 138, 178, 548
AccI GTMKAC 1 cut(s) 370
AccII CGCG 2 cut(s) 401, 865
AccIII TCCGGA 1 cut(s) 328
AciI CCGC 7 cut(s) 136, 178, 428, 440, 546, 644, 788
AclWI GGATC 2 cut(s) 261, 283
AcoI YGGCCR 1 cut(s) 1033
AcsI RAATTY 1 cut(s) 575
AcuI CTGAAG 1 cut(s) 77
AfaI GTAC 2 cut(s) 668, 836
AfiI CCNNNNNNNGG 3 cut(s) 214, 794, 857
AgeI ACCGGT 1 cut(s) 163
AgsI TTSAA 2 cut(s) 394, 663
AjiI CACGTC 1 cut(s) 446
AjnI CCWGG 1 cut(s) 24
Alw26I GTCTC 3 cut(s) 46, 597, 603
AlwI GGATC 2 cut(s) 261, 283
Ama87I CYCGRG 1 cut(s) 347
Aor13HI TCCGGA 1 cut(s) 328
AoxI GGCC 5 cut(s) 688, 700, 797, 1016, 1033
ApaI GGGCCC 1 cut(s) 801
ApeKI GCWGC 4 cut(s) 430, 745, 980, 983
ApoI RAATTY 1 cut(s) 575
AsiGI ACCGGT 1 cut(s) 163
AspS9I GGNCC 6 cut(s) 217, 701, 782, 797, 798, 893
AsuC2I CCSGG 1 cut(s) 631
AsuHPI GGTGA 5 cut(s) 25, 92, 187, 535, 579
AvaI CYCGRG 1 cut(s) 347
AvaII GGWCC 3 cut(s) 217, 782, 893
BaeGI GKGCMC 1 cut(s) 801
BanI GGYRCC 1 cut(s) 901
BanII GRGCYC 2 cut(s) 801, 863
BbsI GAAGAC 1 cut(s) 950
BbvCI CCTCAGC 2 cut(s) 558, 802
BbvI GCAGC 4 cut(s) 442, 757, 967, 970
BccI CCATC 6 cut(s) 164, 370, 559, 712, 904, 943
BceAI ACGGC 3 cut(s) 703, 1020, 1032
BciT130I CCWGG 1 cut(s) 26
BclI TGATCA 4 cut(s) 336, 616, 736, 925
BcnI CCSGG 1 cut(s) 631
BcoDI GTCTC 3 cut(s) 46, 597, 603
BfaI CTAG 6 cut(s) 293, 464, 507, 792, 873, 1014
BfmI CTRYAG 3 cut(s) 568, 984, 1024
BglI GCCNNNNNGGC 1 cut(s) 796
BisI GCNGC 4 cut(s) 431, 746, 981, 984
BlsI GCNGC 4 cut(s) 432, 747, 982, 985
Bme1390I CCNGG 2 cut(s) 26, 631
Bme18I GGWCC 3 cut(s) 217, 782, 893
BmeT110I CYCGRG 1 cut(s) 347
BmgBI CACGTC 1 cut(s) 446
BmgT120I GGNCC 6 cut(s) 217, 701, 782, 797, 798, 893
BmiI GGNNCC 3 cut(s) 15, 799, 903
BmrFI CCNGG 2 cut(s) 26, 631
BmsI GCATC 3 cut(s) 442, 709, 805
BpiI GAAGAC 1 cut(s) 950
Bpu10I CCTNAGC 2 cut(s) 558, 802
BpuEI CTTGAG 2 cut(s) 468, 516
BpuMI CCSGG 1 cut(s) 631
Bsa29I ATCGAT 1 cut(s) 731
BsaJI CCNNGG 1 cut(s) 764
BsaWI WCCGGW 2 cut(s) 163, 328
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 3 cut(s) 214, 794, 857
Bse118I RCCGGY 1 cut(s) 163
Bse1I ACTGG 2 cut(s) 74, 905
BseAI TCCGGA 1 cut(s) 328
BseBI CCWGG 1 cut(s) 26
BseCI ATCGAT 1 cut(s) 731
BseDI CCNNGG 1 cut(s) 764
BseGI GGATG 1 cut(s) 433
BseLI CCNNNNNNNGG 3 cut(s) 214, 794, 857
BseMII CTCAG 3 cut(s) 572, 816, 987
BseNI ACTGG 2 cut(s) 74, 905
BseSI GKGCMC 1 cut(s) 801
BseXI GCAGC 4 cut(s) 442, 757, 967, 970
Bsh1236I CGCG 2 cut(s) 401, 865
Bsh1285I CGRYCG 1 cut(s) 673
BshFI GGCC 5 cut(s) 690, 702, 799, 1018, 1035
BshNI GGYRCC 1 cut(s) 901
BshTI ACCGGT 1 cut(s) 163
BshVI ATCGAT 1 cut(s) 731
BsiEI CGRYCG 1 cut(s) 673
BsiHKCI CYCGRG 1 cut(s) 347
BsiSI CCGG 3 cut(s) 164, 329, 630
BslI CCNNNNNNNGG 3 cut(s) 214, 794, 857
BsmAI GTCTC 3 cut(s) 46, 597, 603
BsmBI CGTCTC 3 cut(s) 46, 597, 603
BsmI GAATGC 1 cut(s) 608
BsnI GGCC 5 cut(s) 690, 702, 799, 1018, 1035
BsoBI CYCGRG 1 cut(s) 347
Bsp120I GGGCCC 1 cut(s) 797
Bsp1286I GDGCHC 2 cut(s) 801, 863
Bsp13I TCCGGA 1 cut(s) 328
Bsp68I TCGCGA 2 cut(s) 401, 865
BspACI CCGC 7 cut(s) 136, 178, 428, 440, 546, 644, 788
BspANI GGCC 5 cut(s) 690, 702, 799, 1018, 1035
BspCNI CTCAG 3 cut(s) 571, 815, 988
BspDI ATCGAT 1 cut(s) 731
BspEI TCCGGA 1 cut(s) 328
BspFNI CGCG 2 cut(s) 401, 865
BspLI GGNNCC 3 cut(s) 15, 799, 903
BspMAI CTGCAG 1 cut(s) 988
BspPI GGATC 2 cut(s) 261, 283
BspT107I GGYRCC 1 cut(s) 901
BsrBI CCGCTC 3 cut(s) 138, 178, 548
BsrFI RCCGGY 1 cut(s) 163
BsrI ACTGG 2 cut(s) 74, 905
BssAI RCCGGY 1 cut(s) 163
BssECI CCNNGG 1 cut(s) 764
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 5 cut(s) 37, 80, 585, 591, 782
Bst6I CTCTTC 2 cut(s) 192, 966
BstC8I GCNNGC 2 cut(s) 399, 863
BstDEI CTNAG 4 cut(s) 558, 802, 964, 996
BstEII GGTNACC 2 cut(s) 80, 826
BstF5I GGATG 1 cut(s) 433
BstFNI CGCG 2 cut(s) 401, 865
BstMAI GTCTC 3 cut(s) 46, 597, 603
BstMCI CGRYCG 1 cut(s) 673
BstMWI GCNNNNNNNGC 2 cut(s) 439, 796
BstNI CCWGG 1 cut(s) 26
BstPI GGTNACC 2 cut(s) 80, 826
BstSCI CCNGG 2 cut(s) 24, 629
BstSFI CTRYAG 3 cut(s) 568, 984, 1024
BstSLI GKGCMC 1 cut(s) 801
BstUI CGCG 2 cut(s) 401, 865
BstV1I GCAGC 4 cut(s) 442, 757, 967, 970
BstV2I GAAGAC 1 cut(s) 950
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
Bsu15I ATCGAT 1 cut(s) 731
BsuRI GGCC 5 cut(s) 690, 702, 799, 1018, 1035
BsuTUI ATCGAT 1 cut(s) 731
BtrI CACGTC 1 cut(s) 446
BtsCI GGATG 1 cut(s) 433
BtsIMutI CAGTG 1 cut(s) 612
BtuMI TCGCGA 2 cut(s) 401, 865
Cac8I GCNNGC 2 cut(s) 399, 863
Cfr10I RCCGGY 1 cut(s) 163
Cfr13I GGNCC 6 cut(s) 217, 701, 782, 797, 798, 893
ClaI ATCGAT 1 cut(s) 731
CsiI ACCWGGT 1 cut(s) 24
Csp6I GTAC 2 cut(s) 667, 835
CspAI ACCGGT 1 cut(s) 163
CviQI GTAC 2 cut(s) 667, 835
DdeI CTNAG 4 cut(s) 558, 802, 964, 996
DrdI GACNNNNNNGTC 1 cut(s) 29
DseDI GACNNNNNNGTC 1 cut(s) 29
EaeI YGGCCR 1 cut(s) 1033
Eam1104I CTCTTC 2 cut(s) 192, 966
EarI CTCTTC 2 cut(s) 192, 966
EciI GGCGGA 2 cut(s) 429, 633
Eco24I GRGCYC 2 cut(s) 801, 863
Eco47I GGWCC 3 cut(s) 217, 782, 893
Eco57I CTGAAG 1 cut(s) 77
Eco88I CYCGRG 1 cut(s) 347
Eco91I GGTNACC 2 cut(s) 80, 826
EcoO109I RGGNCCY 1 cut(s) 798
EcoO65I GGTNACC 2 cut(s) 80, 826
EcoRI GAATTC 1 cut(s) 575
EcoRII CCWGG 1 cut(s) 24
EcoT38I GRGCYC 2 cut(s) 801, 863
Esp3I CGTCTC 3 cut(s) 46, 597, 603
FaiI YATR 3 cut(s) 857, 924, 1032
FauI CCCGC 1 cut(s) 143
FbaI TGATCA 4 cut(s) 336, 616, 736, 925
FblI GTMKAC 1 cut(s) 370
Fnu4HI GCNGC 4 cut(s) 431, 746, 981, 984
FokI GGATG 1 cut(s) 420
FriOI GRGCYC 2 cut(s) 801, 863
Fsp4HI GCNGC 4 cut(s) 431, 746, 981, 984
FspBI CTAG 6 cut(s) 293, 464, 507, 792, 873, 1014
GluI GCNGC 4 cut(s) 431, 746, 981, 984
HaeIII GGCC 5 cut(s) 690, 702, 799, 1018, 1035
HapII CCGG 3 cut(s) 164, 329, 630
HincII GTYRAC 2 cut(s) 67, 371
HindII GTYRAC 2 cut(s) 67, 371
HinfI GANTC 5 cut(s) 146, 212, 308, 325, 385
HpaII CCGG 3 cut(s) 164, 329, 630
HphI GGTGA 5 cut(s) 25, 92, 187, 535, 579
Hpy166II GTNNAC 4 cut(s) 67, 208, 371, 785
Hpy188I TCNGA 7 cut(s) 13, 142, 253, 275, 313, 997, 1010
Hpy188III TCNNGA 4 cut(s) 110, 329, 400, 864
Hpy8I GTNNAC 4 cut(s) 67, 208, 371, 785
Hpy99I CGWCG 3 cut(s) 13, 41, 275
HpyAV CCTTC 1 cut(s) 733
HpyCH4III ACNGT 5 cut(s) 37, 80, 585, 591, 782
HpyCH4IV ACGT 3 cut(s) 96, 445, 658
HpyCH4V TGCA 2 cut(s) 940, 986
HpyF10VI GCNNNNNNNGC 2 cut(s) 439, 796
HpyF3I CTNAG 4 cut(s) 558, 802, 964, 996
HpySE526I ACGT 3 cut(s) 96, 445, 658
Kpn2I TCCGGA 1 cut(s) 328
Ksp22I TGATCA 4 cut(s) 336, 616, 736, 925
LmnI GCTCC 7 cut(s) 13, 143, 553, 715, 763, 853, 1010
Lsp1109I GCAGC 4 cut(s) 442, 757, 967, 970
LweI GCATC 3 cut(s) 442, 709, 805
MabI ACCWGGT 1 cut(s) 24
MaeI CTAG 6 cut(s) 293, 464, 507, 792, 873, 1014
MaeII ACGT 3 cut(s) 96, 445, 658
MaeIII GTNAC 6 cut(s) 31, 74, 80, 563, 585, 826
MbiI CCGCTC 3 cut(s) 138, 178, 548
MboII GAAGA 6 cut(s) 70, 179, 240, 394, 955, 983
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 2 cut(s) 801, 863
MluCI AATT 4 cut(s) 244, 332, 575, 682
MlyI GAGTC 1 cut(s) 302
MmeI TCCRAC 1 cut(s) 253
MroI TCCGGA 1 cut(s) 328
MspI CCGG 3 cut(s) 164, 329, 630
MspR9I CCNGG 2 cut(s) 26, 631
Mva1269I GAATGC 1 cut(s) 608
MvaI CCWGG 1 cut(s) 26
MvnI CGCG 2 cut(s) 401, 865
MwoI GCNNNNNNNGC 2 cut(s) 439, 796
NciI CCSGG 1 cut(s) 631
NlaIV GGNNCC 3 cut(s) 15, 799, 903
NmuCI GTSAC 4 cut(s) 31, 80, 563, 585
NruI TCGCGA 2 cut(s) 401, 865
PaeR7I CTCGAG 1 cut(s) 347
PcsI WCGNNNNNNNCGW 1 cut(s) 257
PctI GAATGC 1 cut(s) 608
PfeI GAWTC 4 cut(s) 146, 212, 325, 385
PflFI GACNNNGTC 1 cut(s) 7
PinAI ACCGGT 1 cut(s) 163
PkrI GCNGC 4 cut(s) 432, 747, 982, 985
Ple19I CGATCG 1 cut(s) 673
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 24
PspEI GGTNACC 2 cut(s) 80, 826
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 3 cut(s) 15, 799, 903
PspOMI GGGCCC 1 cut(s) 797
PspPI GGNCC 6 cut(s) 217, 701, 782, 797, 798, 893
PspXI VCTCGAGB 1 cut(s) 347
PstI CTGCAG 1 cut(s) 988
PsuI RGATCY 1 cut(s) 253
PsyI GACNNNGTC 1 cut(s) 7
PvuI CGATCG 1 cut(s) 673
RruI TCGCGA 2 cut(s) 401, 865
RsaI GTAC 2 cut(s) 668, 836
RsaNI GTAC 2 cut(s) 667, 835
SalI GTCGAC 1 cut(s) 369
SatI GCNGC 4 cut(s) 431, 746, 981, 984
Sau96I GGNCC 6 cut(s) 217, 701, 782, 797, 798, 893
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 2 cut(s) 26, 631
SduI GDGCHC 2 cut(s) 801, 863
SexAI ACCWGGT 1 cut(s) 24
SfaNI GCATC 3 cut(s) 442, 709, 805
SfcI CTRYAG 3 cut(s) 568, 984, 1024
Sfr274I CTCGAG 1 cut(s) 347
SinI GGWCC 3 cut(s) 217, 782, 893
SlaI CTCGAG 1 cut(s) 347
SmlI CTYRAG 3 cut(s) 347, 483, 531
SmoI CTYRAG 3 cut(s) 347, 483, 531
Sse9I AATT 4 cut(s) 244, 332, 575, 682
SsiI CCGC 7 cut(s) 136, 178, 428, 440, 546, 644, 788
SspMI CTAG 6 cut(s) 293, 464, 507, 792, 873, 1014
StyD4I CCNGG 2 cut(s) 24, 629
TaaI ACNGT 5 cut(s) 37, 80, 585, 591, 782
TaiI ACGT 3 cut(s) 99, 448, 661
TaqI TCGA 6 cut(s) 21, 228, 348, 370, 731, 909
TaqII GACCGA 1 cut(s) 205
TasI AATT 4 cut(s) 244, 332, 575, 682
TatI WGTACW 1 cut(s) 834
TfiI GAWTC 4 cut(s) 146, 212, 325, 385
TscAI CASTG 1 cut(s) 619
TseFI GTSAC 4 cut(s) 31, 80, 563, 585
TseI GCWGC 4 cut(s) 430, 745, 980, 983
Tsp45I GTSAC 4 cut(s) 31, 80, 563, 585
TspDTI ATGAA 1 cut(s) 227
TspGWI ACGGA 2 cut(s) 585, 894
TspRI CASTG 1 cut(s) 619
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 3 cut(s) 217, 782, 893
XapI RAATTY 1 cut(s) 575
XhoI CTCGAG 1 cut(s) 347
XmiI GTMKAC 1 cut(s) 370
XspI CTAG 6 cut(s) 293, 464, 507, 792, 873, 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.