Rh1DG353100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001015
Physical Location & Seq
Forward (+)
57680353 .. 57680874
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG353100.1

Sequence Viewer

Length: 510 bp
ATGGACATGAACAACAATAACACAAGTGGTTACTGGATGAGAGCCGTGAAGAAGAACGAGAGGGCACATGAAGAAGAGGAGTTTGATCTTGGTTTTGCTTTTACAGTATACGATGCTGAGGGAATTGACCCACCGAACAAGAGCAAAATACCCGTTTCAGACCGGGTTTACGACTTGCTATGGTGGGTTGAACCTGGACAGGAATATTGGGCTGAAGAGTCTATTGTTGGGCGACCAAATCTTAAATGGGGCAGGATTTGGAAGGTTCGATTAGGGCAGCACGTGTGGCCAGGTTTTGTTCATGTTGAAATTATTCGTAGACGAGATGACAAAGAGCCGGGAACTTCTGGCGGCATAAAGACGCCGGAAAATTCTGGTGCCATAGCATCGGTGAACCGGGTCAGGATCCCTCTATCGATGCCCAATGAGAGGAAAGAAGGGCGATTTGGGCTTGTGAAAAGCGATGGGCCTGGGTTGATAGAGGAAGGCTTAATGCAAATGATTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

169

Amino Acids

19.41

Weight (kDa)

5.98

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 377
AccI GTMKAC 2 cut(s) 108, 319
AciI CCGC 1 cut(s) 351
AclWI GGATC 2 cut(s) 400, 413
AcoI YGGCCR 1 cut(s) 287
AcsI RAATTY 1 cut(s) 370
AcuI CTGAAG 1 cut(s) 234
AcvI CACGTG 1 cut(s) 283
AcyI GRCGYC 1 cut(s) 362
AfiI CCNNNNNNNGG 1 cut(s) 429
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 2 cut(s) 191, 308
AjnI CCWGG 3 cut(s) 193, 289, 469
AjuI GAANNNNNNNTTGG 2 cut(s) 429, 461
AlwI GGATC 2 cut(s) 400, 413
AoxI GGCC 2 cut(s) 287, 467
ApeKI GCWGC 1 cut(s) 277
ApoI RAATTY 1 cut(s) 370
Asp700I GAANNNNTTC 1 cut(s) 312
AspS9I GGNCC 1 cut(s) 467
AsuC2I CCSGG 3 cut(s) 164, 339, 398
AsuHPI GGTGA 1 cut(s) 403
BaeGI GKGCMC 1 cut(s) 67
BalI TGGCCA 1 cut(s) 289
BamHI GGATCC 1 cut(s) 405
BanI GGYRCC 1 cut(s) 377
BbrPI CACGTG 1 cut(s) 283
BbvCI CCTCAGC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 289
BccI CCATC 1 cut(s) 458
BceAI ACGGC 1 cut(s) 29
BciT130I CCWGG 3 cut(s) 195, 291, 471
BcnI CCSGG 3 cut(s) 164, 339, 398
BisI GCNGC 2 cut(s) 278, 352
BlsI GCNGC 2 cut(s) 279, 353
Bme1390I CCNGG 6 cut(s) 164, 195, 291, 339, 398, 471
BmgT120I GGNCC 1 cut(s) 467
BmiI GGNNCC 2 cut(s) 379, 407
BmrFI CCNGG 6 cut(s) 164, 195, 291, 339, 398, 471
BmsI GCATC 3 cut(s) 103, 395, 408
Bpu10I CCTNAGC 1 cut(s) 117
BpuMI CCSGG 3 cut(s) 164, 339, 398
Bsa29I ATCGAT 1 cut(s) 416
BsaAI YACGTR 1 cut(s) 283
BsaHI GRCGYC 1 cut(s) 362
BsaJI CCNNGG 1 cut(s) 470
Bsc4I CCNNNNNNNGG 1 cut(s) 429
Bse1I ACTGG 1 cut(s) 38
BseBI CCWGG 3 cut(s) 195, 291, 471
BseCI ATCGAT 1 cut(s) 416
BseDI CCNNGG 1 cut(s) 470
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 429
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 1 cut(s) 38
BseRI GAGGAG 1 cut(s) 92
BseSI GKGCMC 1 cut(s) 67
BseXI GCAGC 1 cut(s) 289
BshFI GGCC 2 cut(s) 289, 469
BshNI GGYRCC 1 cut(s) 377
BshVI ATCGAT 1 cut(s) 416
BsiSI CCGG 4 cut(s) 163, 338, 365, 397
BslI CCNNNNNNNGG 1 cut(s) 429
BsnI GGCC 2 cut(s) 289, 469
Bsp1286I GDGCHC 1 cut(s) 67
Bsp143I GATC 2 cut(s) 85, 405
BspACI CCGC 1 cut(s) 351
BspANI GGCC 2 cut(s) 289, 469
BspCNI CTCAG 1 cut(s) 109
BspDI ATCGAT 1 cut(s) 416
BspLI GGNNCC 2 cut(s) 379, 407
BspPI GGATC 2 cut(s) 400, 413
BspT107I GGYRCC 1 cut(s) 377
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 470
BssMI GATC 2 cut(s) 85, 405
BssNAI GTATAC 1 cut(s) 109
BssNI GRCGYC 1 cut(s) 362
Bst1107I GTATAC 1 cut(s) 109
Bst2UI CCWGG 3 cut(s) 195, 291, 471
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 2 cut(s) 69, 210
BstACI GRCGYC 1 cut(s) 362
BstBAI YACGTR 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 42
BstKTI GATC 2 cut(s) 88, 408
BstMBI GATC 2 cut(s) 85, 405
BstMWI GCNNNNNNNGC 2 cut(s) 286, 448
BstNI CCWGG 3 cut(s) 195, 291, 471
BstSCI CCNGG 6 cut(s) 162, 193, 289, 337, 396, 469
BstSLI GKGCMC 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 289
BstX2I RGATCY 1 cut(s) 405
BstYI RGATCY 1 cut(s) 405
BstZ17I GTATAC 1 cut(s) 109
Bsu15I ATCGAT 1 cut(s) 416
BsuRI GGCC 2 cut(s) 289, 469
BsuTUI ATCGAT 1 cut(s) 416
BtgZI GCGATG 1 cut(s) 477
BtsCI GGATG 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 467
ClaI ATCGAT 1 cut(s) 416
CseI GACGC 1 cut(s) 370
CviAII CATG 3 cut(s) 7, 68, 302
CviJI RGCY 7 cut(s) 44, 212, 289, 337, 451, 469, 489
CviKI_1 RGCY 7 cut(s) 44, 212, 289, 337, 451, 469, 489
DdeI CTNAG 1 cut(s) 117
DpnI GATC 2 cut(s) 87, 407
DpnII GATC 2 cut(s) 85, 405
EaeI YGGCCR 1 cut(s) 287
Eam1104I CTCTTC 2 cut(s) 69, 210
EarI CTCTTC 2 cut(s) 69, 210
Eco57I CTGAAG 1 cut(s) 234
Eco72I CACGTG 1 cut(s) 283
EcoRII CCWGG 3 cut(s) 193, 289, 469
FaeI CATG 3 cut(s) 10, 71, 305
FaiI YATR 7 cut(s) 8, 69, 109, 181, 303, 356, 383
FatI CATG 3 cut(s) 6, 67, 301
FblI GTMKAC 2 cut(s) 108, 319
Fnu4HI GCNGC 2 cut(s) 278, 352
FokI GGATG 1 cut(s) 49
Fsp4HI GCNGC 2 cut(s) 278, 352
GluI GCNGC 2 cut(s) 278, 352
HaeIII GGCC 2 cut(s) 289, 469
HapII CCGG 4 cut(s) 163, 338, 365, 397
HgaI GACGC 1 cut(s) 370
Hin1I GRCGYC 1 cut(s) 362
Hin1II CATG 3 cut(s) 10, 71, 305
HinfI GANTC 1 cut(s) 218
HpaII CCGG 4 cut(s) 163, 338, 365, 397
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 4 cut(s) 109, 169, 320, 394
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 1 cut(s) 403
Hpy8I GTNNAC 4 cut(s) 109, 169, 320, 394
HpyAV CCTTC 3 cut(s) 256, 431, 479
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 1 cut(s) 496
HpyF10VI GCNNNNNNNGC 2 cut(s) 286, 448
HpyF3I CTNAG 1 cut(s) 117
HpySE526I ACGT 1 cut(s) 282
Hsp92I GRCGYC 1 cut(s) 362
Hsp92II CATG 3 cut(s) 10, 71, 305
Kzo9I GATC 2 cut(s) 85, 405
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 3 cut(s) 103, 395, 408
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 1 cut(s) 29
MalI GATC 2 cut(s) 87, 407
MboI GATC 2 cut(s) 85, 405
MboII GAAGA 5 cut(s) 61, 64, 83, 86, 227
MflI RGATCY 1 cut(s) 405
MhlI GDGCHC 1 cut(s) 67
MlsI TGGCCA 1 cut(s) 289
MluCI AATT 3 cut(s) 123, 309, 370
MluNI TGGCCA 1 cut(s) 289
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 6 cut(s) 54, 70, 112, 420, 423, 475
Mox20I TGGCCA 1 cut(s) 289
MroXI GAANNNNTTC 1 cut(s) 312
MscI TGGCCA 1 cut(s) 289
MseI TTAA 2 cut(s) 243, 491
Msp20I TGGCCA 1 cut(s) 289
MspI CCGG 4 cut(s) 163, 338, 365, 397
MspR9I CCNGG 6 cut(s) 164, 195, 291, 339, 398, 471
MvaI CCWGG 3 cut(s) 195, 291, 471
MwoI GCNNNNNNNGC 2 cut(s) 286, 448
NciI CCSGG 3 cut(s) 164, 339, 398
NdeII GATC 2 cut(s) 85, 405
NlaIII CATG 3 cut(s) 10, 71, 305
NlaIV GGNNCC 2 cut(s) 379, 407
PdmI GAANNNNTTC 1 cut(s) 312
PkrI GCNGC 2 cut(s) 279, 353
PleI GAGTC 1 cut(s) 226
PmaCI CACGTG 1 cut(s) 283
PmlI CACGTG 1 cut(s) 283
PpsI GAGTC 1 cut(s) 226
Ppu21I YACGTR 1 cut(s) 283
Psp6I CCWGG 3 cut(s) 193, 289, 469
PspCI CACGTG 1 cut(s) 283
PspGI CCWGG 3 cut(s) 193, 289, 469
PspN4I GGNNCC 2 cut(s) 379, 407
PspPI GGNCC 1 cut(s) 467
PsuI RGATCY 1 cut(s) 405
SaqAI TTAA 2 cut(s) 243, 491
SatI GCNGC 2 cut(s) 278, 352
Sau3AI GATC 2 cut(s) 85, 405
Sau96I GGNCC 1 cut(s) 467
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 6 cut(s) 164, 195, 291, 339, 398, 471
SduI GDGCHC 1 cut(s) 67
SetI ASST 5 cut(s) 196, 267, 285, 295, 509
SfaNI GCATC 3 cut(s) 103, 395, 408
Sse9I AATT 3 cut(s) 123, 309, 370
SsiI CCGC 1 cut(s) 351
SspI AATATT 1 cut(s) 206
StyD4I CCNGG 6 cut(s) 162, 193, 289, 337, 396, 469
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 1 cut(s) 285
TaqI TCGA 2 cut(s) 268, 416
TasI AATT 3 cut(s) 123, 309, 370
TauI GCSGC 1 cut(s) 354
Tru1I TTAA 2 cut(s) 243, 491
Tru9I TTAA 2 cut(s) 243, 491
TseI GCWGC 1 cut(s) 277
TspDTI ATGAA 3 cut(s) 23, 84, 290
XapI RAATTY 1 cut(s) 370
XcmI CCANNNNNNNNNTGG 1 cut(s) 243
XmiI GTMKAC 2 cut(s) 108, 319
XmnI GAANNNNTTC 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.