Rh1AG358600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001015
Physical Location & Seq
Forward (+)
59335427 .. 59336333
907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG358600.1

Sequence Viewer

Length: 594 bp
ATGAAGAGAAGCTATGACGACAGCCATTGCTCTGCAAACGCTACCTCGAACAACAACACCAGCCGTAATAAGTGCAGAGCAACGGCCGAGATGAAGAGGAAAAAGATTATACGACAAAGACCATTTGACGGTGTTGATTTGTTTCTCGAGCTCGACAGAGTCGTCCTACTTGACCCCCCAAGTCTCTGGACTTTACCCTTGTCCGAACGGCGCTACCAAGTGGTGTGGTGGATGGAGCCCGACGGAGAAAAGCAAATGTCTATCAAGGTTACAGGGTCACCAAACCCTAAATGGGACACAAGGTGGTTCGTTGGATTAAAGGGCAACCCTGTGGGTGAGGACCACTTTGTGAACATAGAGGTCTTGAGGTATAACAGCAAGAAAAACCGCTGCGACCCCGGAACCTCCGACGACCCCAGCATTGGGGAAGTGATTCGGGCTAGGGTTCCATTTCCGAAGAGGCTCGAGCAGACAATAGAAGGGCGTTATGAACTTGTGAAGCCTGATGGAGCCGGGAACATGAAGCCCGCTGGGGATATAGTATTGACGATGTCGCTGGAGACCTGGACCAAGGACTATTACAGATGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

197

Amino Acids

22.82

Weight (kDa)

8.92

Isoelectric Point (pI)

49.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 161
AciI CCGC 2 cut(s) 388, 528
AcoI YGGCCR 1 cut(s) 84
AdeI CACNNNGTG 2 cut(s) 303, 349
AfiI CCNNNNNNNGG 4 cut(s) 128, 292, 422, 423
AjnI CCWGG 1 cut(s) 563
AluBI AGCT 2 cut(s) 12, 151
AluI AGCT 2 cut(s) 12, 151
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 2 cut(s) 188, 554
Ama87I CYCGRG 2 cut(s) 146, 464
AoxI GGCC 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 390
Asp700I GAANNNNTTC 1 cut(s) 432
AspLEI GCGC 1 cut(s) 213
AspS9I GGNCC 2 cut(s) 340, 567
AsuC2I CCSGG 2 cut(s) 399, 514
AsuHPI GGTGA 2 cut(s) 270, 347
AvaI CYCGRG 2 cut(s) 146, 464
AvaII GGWCC 2 cut(s) 340, 567
BanII GRGCYC 2 cut(s) 153, 240
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 377
BccI CCATC 3 cut(s) 226, 500, 579
BceAI ACGGC 3 cut(s) 48, 99, 224
BciT130I CCWGG 1 cut(s) 565
BcnI CCSGG 2 cut(s) 399, 514
BcoDI GTCTC 2 cut(s) 188, 554
BfaI CTAG 1 cut(s) 441
BfoI RGCGCY 1 cut(s) 214
BisI GCNGC 1 cut(s) 391
BlsI GCNGC 1 cut(s) 392
Bme1390I CCNGG 3 cut(s) 399, 514, 565
Bme18I GGWCC 2 cut(s) 340, 567
BmeT110I CYCGRG 2 cut(s) 146, 464
BmgT120I GGNCC 2 cut(s) 340, 567
BmiI GGNNCC 4 cut(s) 237, 403, 447, 511
BmrFI CCNGG 3 cut(s) 399, 514, 565
BpmI CTGGAG 1 cut(s) 578
BpuEI CTTGAG 1 cut(s) 385
BpuMI CCSGG 2 cut(s) 399, 514
BsaI GGTCTC 1 cut(s) 554
BsaJI CCNNGG 2 cut(s) 397, 570
Bsc4I CCNNNNNNNGG 4 cut(s) 128, 292, 422, 423
Bse3DI GCAATG 1 cut(s) 25
BseBI CCWGG 1 cut(s) 565
BseDI CCNNGG 2 cut(s) 397, 570
BseGI GGATG 1 cut(s) 237
BseLI CCNNNNNNNGG 4 cut(s) 128, 292, 422, 423
BseMI GCAATG 1 cut(s) 25
BseX3I CGGCCG 1 cut(s) 84
BseXI GCAGC 1 cut(s) 377
BseYI CCCAGC 2 cut(s) 416, 530
BsgI GTGCAG 1 cut(s) 94
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 1 cut(s) 86
BsiEI CGRYCG 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 2 cut(s) 146, 464
BsiSI CCGG 2 cut(s) 399, 513
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 4 cut(s) 128, 292, 422, 423
BsmAI GTCTC 2 cut(s) 188, 554
BsmFI GGGAC 1 cut(s) 308
BsnI GGCC 1 cut(s) 86
Bso31I GGTCTC 1 cut(s) 554
BsoBI CYCGRG 2 cut(s) 146, 464
Bsp1286I GDGCHC 2 cut(s) 153, 240
BspACI CCGC 2 cut(s) 388, 528
BspANI GGCC 1 cut(s) 86
BspLI GGNNCC 4 cut(s) 237, 403, 447, 511
BspTNI GGTCTC 1 cut(s) 554
BsrDI GCAATG 1 cut(s) 25
BssECI CCNNGG 2 cut(s) 397, 570
BssT1I CCWWGG 1 cut(s) 570
Bst2UI CCWGG 1 cut(s) 565
Bst4CI ACNGT 1 cut(s) 131
Bst6I CTCTTC 2 cut(s) 89, 452
BstC8I GCNNGC 1 cut(s) 528
BstEII GGTNACC 1 cut(s) 276
BstF5I GGATG 1 cut(s) 237
BstH2I RGCGCY 1 cut(s) 214
BstHHI GCGC 1 cut(s) 213
BstMAI GTCTC 2 cut(s) 188, 554
BstMCI CGRYCG 1 cut(s) 87
BstNI CCWGG 1 cut(s) 565
BstPI GGTNACC 1 cut(s) 276
BstSCI CCNGG 3 cut(s) 397, 512, 563
BstV1I GCAGC 1 cut(s) 377
BstXI CCANNNNNNTGG 1 cut(s) 186
BstZI CGGCCG 1 cut(s) 84
BsuRI GGCC 1 cut(s) 86
BtsCI GGATG 1 cut(s) 237
Cac8I GCNNGC 1 cut(s) 528
CfoI GCGC 1 cut(s) 213
Cfr13I GGNCC 2 cut(s) 340, 567
CspCI CAANNNNNGTGG 2 cut(s) 206, 241
CviAII CATG 1 cut(s) 520
DraIII CACNNNGTG 2 cut(s) 303, 349
DrdI GACNNNNNNGTC 1 cut(s) 161
DseDI GACNNNNNNGTC 1 cut(s) 161
EaeI YGGCCR 1 cut(s) 84
EagI CGGCCG 1 cut(s) 84
Eam1104I CTCTTC 2 cut(s) 89, 452
EarI CTCTTC 2 cut(s) 89, 452
Ecl136II GAGCTC 1 cut(s) 151
EclXI CGGCCG 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 570
Eco24I GRGCYC 2 cut(s) 153, 240
Eco31I GGTCTC 1 cut(s) 554
Eco47I GGWCC 2 cut(s) 340, 567
Eco52I CGGCCG 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 151
Eco88I CYCGRG 2 cut(s) 146, 464
Eco91I GGTNACC 1 cut(s) 276
EcoICRI GAGCTC 1 cut(s) 151
EcoO65I GGTNACC 1 cut(s) 276
EcoRII CCWGG 1 cut(s) 563
EcoT14I CCWWGG 1 cut(s) 570
EcoT38I GRGCYC 2 cut(s) 153, 240
ErhI CCWWGG 1 cut(s) 570
FaeI CATG 1 cut(s) 523
FaiI YATR 7 cut(s) 15, 110, 356, 372, 489, 521, 539
FaqI GGGAC 1 cut(s) 308
FatI CATG 1 cut(s) 519
FauI CCCGC 1 cut(s) 535
Fnu4HI GCNGC 1 cut(s) 391
FokI GGATG 1 cut(s) 244
FriOI GRGCYC 2 cut(s) 153, 240
Fsp4HI GCNGC 1 cut(s) 391
FspBI CTAG 1 cut(s) 441
GlaI GCGC 1 cut(s) 212
GluI GCNGC 1 cut(s) 391
GsaI CCCAGC 2 cut(s) 420, 534
GsuI CTGGAG 1 cut(s) 578
HaeII RGCGCY 1 cut(s) 214
HaeIII GGCC 1 cut(s) 86
HapII CCGG 2 cut(s) 399, 513
HhaI GCGC 1 cut(s) 213
Hin1II CATG 1 cut(s) 523
Hin6I GCGC 1 cut(s) 211
HinP1I GCGC 1 cut(s) 211
HinfI GANTC 2 cut(s) 159, 433
HpaII CCGG 2 cut(s) 399, 513
HphI GGTGA 2 cut(s) 270, 347
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 3 cut(s) 205, 409, 456
Hpy188III TCNNGA 3 cut(s) 146, 187, 364
Hpy8I GTNNAC 1 cut(s) 352
Hpy99I CGWCG 2 cut(s) 245, 413
HpyAV CCTTC 1 cut(s) 473
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4V TGCA 2 cut(s) 35, 75
Hsp92II CATG 1 cut(s) 523
HspAI GCGC 1 cut(s) 211
LmnI GCTCC 2 cut(s) 235, 509
Lsp1109I GCAGC 1 cut(s) 377
MaeI CTAG 1 cut(s) 441
MaeIII GTNAC 2 cut(s) 268, 276
MboII GAAGA 3 cut(s) 16, 106, 469
MhlI GDGCHC 2 cut(s) 153, 240
MlyI GAGTC 1 cut(s) 168
MmeI TCCRAC 2 cut(s) 292, 432
MnlI CCTC 7 cut(s) 55, 90, 331, 352, 360, 415, 453
MroXI GAANNNNTTC 1 cut(s) 432
MseI TTAA 1 cut(s) 317
MspA1I CMGCKG 2 cut(s) 390, 530
MspI CCGG 2 cut(s) 399, 513
MspR9I CCNGG 3 cut(s) 399, 514, 565
MvaI CCWGG 1 cut(s) 565
NciI CCSGG 2 cut(s) 399, 514
NlaIII CATG 1 cut(s) 523
NlaIV GGNNCC 4 cut(s) 237, 403, 447, 511
NmeAIII GCCGAG 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 276
PaeR7I CTCGAG 2 cut(s) 146, 464
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PdmI GAANNNNTTC 1 cut(s) 432
PfeI GAWTC 1 cut(s) 433
PflFI GACNNNGTC 2 cut(s) 158, 550
PkrI GCNGC 1 cut(s) 392
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 563
PspEI GGTNACC 1 cut(s) 276
PspFI CCCAGC 2 cut(s) 416, 530
PspGI CCWGG 1 cut(s) 563
PspN4I GGNNCC 4 cut(s) 237, 403, 447, 511
PspPI GGNCC 2 cut(s) 340, 567
PspXI VCTCGAGB 1 cut(s) 464
PsyI GACNNNGTC 2 cut(s) 158, 550
SacI GAGCTC 1 cut(s) 153
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 1 cut(s) 391
Sau96I GGNCC 2 cut(s) 340, 567
SchI GAGTC 1 cut(s) 168
ScrFI CCNGG 3 cut(s) 399, 514, 565
SduI GDGCHC 2 cut(s) 153, 240
SetI ASST 9 cut(s) 14, 47, 153, 270, 305, 363, 371, 407, 566
Sfr274I CTCGAG 2 cut(s) 146, 464
SinI GGWCC 2 cut(s) 340, 567
SlaI CTCGAG 2 cut(s) 146, 464
SmlI CTYRAG 3 cut(s) 146, 364, 464
SmoI CTYRAG 3 cut(s) 146, 364, 464
SsiI CCGC 2 cut(s) 388, 528
SspMI CTAG 1 cut(s) 441
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 3 cut(s) 397, 512, 563
StyI CCWWGG 1 cut(s) 570
TaaI ACNGT 1 cut(s) 131
TaqI TCGA 4 cut(s) 47, 147, 153, 465
TfiI GAWTC 1 cut(s) 433
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TseFI GTSAC 1 cut(s) 276
TseI GCWGC 1 cut(s) 390
Tsp45I GTSAC 1 cut(s) 276
TspDTI ATGAA 4 cut(s) 17, 107, 504, 536
TspGWI ACGGA 1 cut(s) 258
Tth111I GACNNNGTC 2 cut(s) 158, 550
VpaK11BI GGWCC 2 cut(s) 340, 567
XcmI CCANNNNNNNNNTGG 1 cut(s) 288
XhoI CTCGAG 2 cut(s) 146, 464
XmnI GAANNNNTTC 1 cut(s) 432
XspI CTAG 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.