Rh1AG358700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001015
Physical Location & Seq
Forward (+)
59361688 .. 59362669
982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG358700.1

Sequence Viewer

Length: 621 bp
ATGGAGAGGAGGACGAAGATGGCGATGGATATCAGGAGGAGGTTACCACATGGAGGCTACAACACTAGAAGTACAACTCCTTATTGGATGAGAGACCTTCAGAACAAAAGAGCACAACCAGAAGAAGACTTTGATCTCGGTTTGTCTTTCACCATTCACGGCGGCGATGGAATCGACCCCCCGAGTCGGAGCACCTTCTCGGAGCGGACATACTTCTTGGTGTGGTGGCTCGAACCTGGGAAAGAAAACTGGGCCCCTTTCCCGGCGCCCGGGAAACCTATTGATCCTGCATGGGACAGAATTTGGACTCAGCGATTCGACAGACATGTATGGCCTGGCTTTATATATGTGGAAGTTATGAGGAGGCGAGATAAGTGGGCAGCCGGAACTTCCAGTGGCATAGCGACGGTGATTGAGAAAGGGAGGGAGAAAGTGGTGGCGCCGGACACTCCCGGCGCGGTGGTGTACGGCATAGAGTCAGTTAGCCGGGCCAAGATCCCTCTCCCCAAGCCTGGTAAGAAAAGGTCGGGAAGGTTTGGGCTTGTGCAGAATGATGGGCCTCGGTTGATTGGACAAGGACATATTTCTGTCACTGTGGAACTTGTTAAATTACCAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

206

Amino Acids

23.44

Weight (kDa)

10.03

Isoelectric Point (pI)

56.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 265, 439
AccBSI CCGCTC 1 cut(s) 205
AccII CGCG 1 cut(s) 458
AciI CCGC 3 cut(s) 162, 205, 458
AclWI GGATC 2 cut(s) 278, 490
AcsI RAATTY 1 cut(s) 300
AcuI CTGAAG 1 cut(s) 83
AcyI GRCGYC 2 cut(s) 266, 440
AfaI GTAC 2 cut(s) 73, 467
AfiI CCNNNNNNNGG 5 cut(s) 53, 186, 262, 269, 512
AflIII ACRYGT 1 cut(s) 325
AjnI CCWGG 3 cut(s) 235, 334, 511
Alw21I GWGCWC 2 cut(s) 115, 194
Alw26I GTCTC 1 cut(s) 87
AlwI GGATC 2 cut(s) 278, 490
Ama87I CYCGRG 2 cut(s) 181, 269
AoxI GGCC 4 cut(s) 252, 332, 489, 557
ApaI GGGCCC 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 380
ApoI RAATTY 1 cut(s) 300
AspLEI GCGC 3 cut(s) 268, 442, 458
AspS9I GGNCC 4 cut(s) 252, 253, 489, 557
AsuC2I CCSGG 5 cut(s) 263, 270, 271, 453, 488
AsuHPI GGTGA 2 cut(s) 142, 421
AvaI CYCGRG 2 cut(s) 181, 269
BaeGI GKGCMC 1 cut(s) 256
BanI GGYRCC 2 cut(s) 265, 439
BanII GRGCYC 1 cut(s) 256
BbsI GAAGAC 1 cut(s) 132
Bbv12I GWGCWC 2 cut(s) 115, 194
BbvI GCAGC 1 cut(s) 392
BccI CCATC 4 cut(s) 13, 19, 161, 548
BceAI ACGGC 2 cut(s) 175, 484
BciT130I CCWGG 3 cut(s) 237, 336, 513
BcnI CCSGG 5 cut(s) 263, 270, 271, 453, 488
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 1 cut(s) 66
BfoI RGCGCY 2 cut(s) 269, 443
BisI GCNGC 2 cut(s) 163, 381
BlsI GCNGC 2 cut(s) 164, 382
Bme1390I CCNGG 8 cut(s) 237, 263, 270, 271, 336, 453, 488, 513
BmeT110I CYCGRG 2 cut(s) 181, 269
BmgT120I GGNCC 4 cut(s) 252, 253, 489, 557
BmiI GGNNCC 4 cut(s) 254, 255, 267, 441
BmrFI CCNGG 8 cut(s) 237, 263, 270, 271, 336, 453, 488, 513
BmrI ACTGGG 1 cut(s) 259
BmuI ACTGGG 1 cut(s) 259
BpiI GAAGAC 1 cut(s) 132
BpuMI CCSGG 5 cut(s) 263, 270, 271, 453, 488
BsaBI GATNNNNATC 1 cut(s) 29
BsaHI GRCGYC 2 cut(s) 266, 440
BsaI GGTCTC 1 cut(s) 87
BsaJI CCNNGG 3 cut(s) 236, 269, 560
Bsc4I CCNNNNNNNGG 5 cut(s) 53, 186, 262, 269, 512
Bse1I ACTGG 2 cut(s) 254, 393
Bse8I GATNNNNATC 1 cut(s) 29
BseBI CCWGG 3 cut(s) 237, 336, 513
BseDI CCNNGG 3 cut(s) 236, 269, 560
BseGI GGATG 1 cut(s) 93
BseJI GATNNNNATC 1 cut(s) 29
BseLI CCNNNNNNNGG 5 cut(s) 53, 186, 262, 269, 512
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 2 cut(s) 254, 393
BseRI GAGGAG 3 cut(s) 22, 52, 376
BseSI GKGCMC 1 cut(s) 256
BseXI GCAGC 1 cut(s) 392
BsgI GTGCAG 1 cut(s) 566
Bsh1236I CGCG 1 cut(s) 458
BshFI GGCC 4 cut(s) 254, 334, 491, 559
BshNI GGYRCC 2 cut(s) 265, 439
BsiHKAI GWGCWC 2 cut(s) 115, 194
BsiHKCI CYCGRG 2 cut(s) 181, 269
BsiSI CCGG 6 cut(s) 263, 270, 384, 443, 453, 487
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 5 cut(s) 53, 186, 262, 269, 512
BsmAI GTCTC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 308
BsnI GGCC 4 cut(s) 254, 334, 491, 559
Bso31I GGTCTC 1 cut(s) 87
BsoBI CYCGRG 2 cut(s) 181, 269
Bsp120I GGGCCC 1 cut(s) 252
Bsp1286I GDGCHC 3 cut(s) 115, 194, 256
Bsp143I GATC 3 cut(s) 133, 283, 495
BspACI CCGC 3 cut(s) 162, 205, 458
BspANI GGCC 4 cut(s) 254, 334, 491, 559
BspCNI CTCAG 1 cut(s) 322
BspFNI CGCG 1 cut(s) 458
BspLI GGNNCC 4 cut(s) 254, 255, 267, 441
BspPI GGATC 2 cut(s) 278, 490
BspT107I GGYRCC 2 cut(s) 265, 439
BspTNI GGTCTC 1 cut(s) 87
BsrBI CCGCTC 1 cut(s) 205
BsrI ACTGG 2 cut(s) 254, 393
BssECI CCNNGG 3 cut(s) 236, 269, 560
BssMI GATC 3 cut(s) 133, 283, 495
BssNI GRCGYC 2 cut(s) 266, 440
Bst2UI CCWGG 3 cut(s) 237, 336, 513
Bst4CI ACNGT 2 cut(s) 409, 595
BstACI GRCGYC 2 cut(s) 266, 440
BstDEI CTNAG 1 cut(s) 309
BstEII GGTNACC 1 cut(s) 42
BstF5I GGATG 1 cut(s) 93
BstFNI CGCG 1 cut(s) 458
BstH2I RGCGCY 2 cut(s) 269, 443
BstHHI GCGC 3 cut(s) 268, 442, 458
BstKTI GATC 3 cut(s) 136, 286, 498
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 3 cut(s) 133, 283, 495
BstNI CCWGG 3 cut(s) 237, 336, 513
BstNSI RCATGY 1 cut(s) 329
BstPI GGTNACC 1 cut(s) 42
BstSCI CCNGG 8 cut(s) 235, 261, 268, 269, 334, 451, 486, 511
BstSLI GKGCMC 1 cut(s) 256
BstUI CGCG 1 cut(s) 458
BstV1I GCAGC 1 cut(s) 392
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 495
BstYI RGATCY 1 cut(s) 495
BsuRI GGCC 4 cut(s) 254, 334, 491, 559
BtgZI GCGATG 2 cut(s) 38, 180
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 400, 591
CfoI GCGC 3 cut(s) 268, 442, 458
Cfr13I GGNCC 4 cut(s) 252, 253, 489, 557
Cfr9I CCCGGG 1 cut(s) 269
Csp6I GTAC 2 cut(s) 72, 466
CviAII CATG 3 cut(s) 50, 291, 326
CviQI GTAC 2 cut(s) 72, 466
DdeI CTNAG 1 cut(s) 309
DinI GGCGCC 2 cut(s) 267, 441
DpnI GATC 3 cut(s) 135, 285, 497
DpnII GATC 3 cut(s) 133, 283, 495
Eco24I GRGCYC 1 cut(s) 256
Eco31I GGTCTC 1 cut(s) 87
Eco32I GATATC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 83
Eco88I CYCGRG 2 cut(s) 181, 269
Eco91I GGTNACC 1 cut(s) 42
EcoO109I RGGNCCY 1 cut(s) 253
EcoO65I GGTNACC 1 cut(s) 42
EcoRII CCWGG 3 cut(s) 235, 334, 511
EcoRV GATATC 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 256
EgeI GGCGCC 2 cut(s) 267, 441
EheI GGCGCC 2 cut(s) 267, 441
FaeI CATG 3 cut(s) 53, 294, 329
FaqI GGGAC 1 cut(s) 308
FatI CATG 3 cut(s) 49, 290, 325
Fnu4HI GCNGC 2 cut(s) 163, 381
FokI GGATG 1 cut(s) 100
FriOI GRGCYC 1 cut(s) 256
Fsp4HI GCNGC 2 cut(s) 163, 381
FspBI CTAG 1 cut(s) 66
GlaI GCGC 3 cut(s) 267, 441, 457
GluI GCNGC 2 cut(s) 163, 381
HaeII RGCGCY 2 cut(s) 269, 443
HaeIII GGCC 4 cut(s) 254, 334, 491, 559
HapII CCGG 6 cut(s) 263, 270, 384, 443, 453, 487
HhaI GCGC 3 cut(s) 268, 442, 458
Hin1I GRCGYC 2 cut(s) 266, 440
Hin1II CATG 3 cut(s) 53, 294, 329
Hin6I GCGC 3 cut(s) 266, 440, 456
HinP1I GCGC 3 cut(s) 266, 440, 456
HinfI GANTC 5 cut(s) 171, 184, 307, 315, 476
HpaII CCGG 6 cut(s) 263, 270, 384, 443, 453, 487
HphI GGTGA 2 cut(s) 142, 421
Hpy166II GTNNAC 1 cut(s) 466
Hpy188I TCNGA 3 cut(s) 102, 189, 202
Hpy188III TCNNGA 2 cut(s) 34, 528
Hpy8I GTNNAC 1 cut(s) 466
Hpy99I CGWCG 1 cut(s) 409
HpyAV CCTTC 3 cut(s) 107, 205, 525
HpyCH4III ACNGT 2 cut(s) 409, 595
HpyCH4V TGCA 2 cut(s) 290, 547
HpyF3I CTNAG 1 cut(s) 309
Hsp92I GRCGYC 2 cut(s) 266, 440
Hsp92II CATG 3 cut(s) 53, 294, 329
HspAI GCGC 3 cut(s) 266, 440, 456
KasI GGCGCC 2 cut(s) 265, 439
Kzo9I GATC 3 cut(s) 133, 283, 495
LmnI GCTCC 2 cut(s) 189, 202
Lsp1109I GCAGC 1 cut(s) 392
MaeI CTAG 1 cut(s) 66
MaeIII GTNAC 2 cut(s) 42, 589
MalI GATC 3 cut(s) 135, 285, 497
MbiI CCGCTC 1 cut(s) 205
MboI GATC 3 cut(s) 133, 283, 495
MboII GAAGA 3 cut(s) 28, 134, 137
MflI RGATCY 1 cut(s) 495
MhlI GDGCHC 3 cut(s) 115, 194, 256
MluCI AATT 2 cut(s) 300, 608
Mly113I GGCGCC 2 cut(s) 266, 440
MlyI GAGTC 3 cut(s) 193, 301, 485
MmeI TCCRAC 1 cut(s) 167
MnlI CCTC 9 cut(s) 3, 30, 33, 47, 354, 357, 417, 510, 570
MseI TTAA 2 cut(s) 606, 619
MspI CCGG 6 cut(s) 263, 270, 384, 443, 453, 487
MspR9I CCNGG 8 cut(s) 237, 263, 270, 271, 336, 453, 488, 513
MvaI CCWGG 3 cut(s) 237, 336, 513
MvnI CGCG 1 cut(s) 458
NarI GGCGCC 2 cut(s) 266, 440
NciI CCSGG 5 cut(s) 263, 270, 271, 453, 488
NdeII GATC 3 cut(s) 133, 283, 495
NlaIII CATG 3 cut(s) 53, 294, 329
NlaIV GGNNCC 4 cut(s) 254, 255, 267, 441
NmuCI GTSAC 1 cut(s) 589
NspI RCATGY 1 cut(s) 329
PciI ACATGT 1 cut(s) 325
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PfeI GAWTC 2 cut(s) 171, 315
PkrI GCNGC 2 cut(s) 164, 382
PleI GAGTC 3 cut(s) 192, 301, 484
PluTI GGCGCC 2 cut(s) 269, 443
PpsI GAGTC 3 cut(s) 192, 301, 484
PscI ACATGT 1 cut(s) 325
Psp6I CCWGG 3 cut(s) 235, 334, 511
PspEI GGTNACC 1 cut(s) 42
PspGI CCWGG 3 cut(s) 235, 334, 511
PspN4I GGNNCC 4 cut(s) 254, 255, 267, 441
PspOMI GGGCCC 1 cut(s) 252
PspPI GGNCC 4 cut(s) 252, 253, 489, 557
PsuI RGATCY 1 cut(s) 495
RsaI GTAC 2 cut(s) 73, 467
RsaNI GTAC 2 cut(s) 72, 466
SaqAI TTAA 2 cut(s) 606, 619
SatI GCNGC 2 cut(s) 163, 381
Sau3AI GATC 3 cut(s) 133, 283, 495
Sau96I GGNCC 4 cut(s) 252, 253, 489, 557
SchI GAGTC 3 cut(s) 193, 301, 485
ScrFI CCNGG 8 cut(s) 237, 263, 270, 271, 336, 453, 488, 513
SduI GDGCHC 3 cut(s) 115, 194, 256
SetI ASST 7 cut(s) 44, 99, 197, 238, 280, 527, 536
SfoI GGCGCC 2 cut(s) 267, 441
SmaI CCCGGG 1 cut(s) 271
Sse9I AATT 2 cut(s) 300, 608
SsiI CCGC 3 cut(s) 162, 205, 458
SspDI GGCGCC 2 cut(s) 265, 439
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 8 cut(s) 235, 261, 268, 269, 334, 451, 486, 511
TaaI ACNGT 2 cut(s) 409, 595
TaqI TCGA 3 cut(s) 174, 231, 318
TasI AATT 2 cut(s) 300, 608
TatI WGTACW 1 cut(s) 71
TauI GCSGC 1 cut(s) 165
TfiI GAWTC 2 cut(s) 171, 315
Tru1I TTAA 2 cut(s) 606, 619
Tru9I TTAA 2 cut(s) 606, 619
TscAI CASTG 2 cut(s) 400, 598
TseFI GTSAC 1 cut(s) 589
TseI GCWGC 1 cut(s) 380
Tsp45I GTSAC 1 cut(s) 589
TspMI CCCGGG 1 cut(s) 269
TspRI CASTG 2 cut(s) 400, 598
XapI RAATTY 1 cut(s) 300
XceI RCATGY 1 cut(s) 329
XmaI CCCGGG 1 cut(s) 269
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.