Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010426.1

Orthogroup ID

OG0001015

Physical Location & Seq

Genomic Coordinates Reverse (-)

102634 .. 103344

Gene Structure 711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010426.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgagaaacttaatcgaatccagcaacttaacaagagattcaagaaattcaaacccagaaatcgagcttgaagaatcaccgagcttgaacccagaaatcgaacccaaaatttctccaagcttgagtcaccgagcttcacagaatcacagcttgaggaagaatcaaagagagcaaaccaagagtgaagagttcgagccttcgactgaaaagtttttaagagagcgcctagctgcctcctcttgccctccgccgccgaagcctttcaatcttgacctcacgatcgtctccgccaagcacctgaagaacgccaactggaagaacgatgacctcaagccctacgccatcttctgggtcaaccccgacctcctcctcgccaccaaatcagacgattctggctccacccgacctatctggaatggggttcactttccccctctccttctccctctatcgacttccggataccgtggcgtagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010143 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043170 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051179 GO:0071704 GO:0071840 GO:0090558 GO:0090626 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Transferase

Protein Analysis

159

Amino Acids

17.94

Weight (kDa)

6.92

Isoelectric Point (pI)

61.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07310
fragaria_vesca	FvH4_1g11890 FvH4_6g44890 FvH4_7g24041 FvH4_7g24042 FvH4_7g24050
malus_domestica	MD01G1147700.v1.1 MD07G1214700.v1.1
prunus_persica	Prupe.2G246500_v2.0.a1 Prupe.2G246600_v2.0.a1
pyrus_communis	pycom01g16640 pycom01g16650 pycom07g19710
rosa_chinensis	RchiOBHm_Chr1g0369451 RchiOBHm_Chr4g0411991
rosa_laevigata	RLG00000027125 RLG00000027126 RLG00000027127 RLG00000027128
rosa_multiflora	Rmu_sc0000039.1_g000010 Rmu_sc0001772.1_g000068 Rmu_sc0001792.1_g000008 Rmu_sc0002235.1_g000074 Rmu_sc0003605.1_g000040 Rmu_sc0003612.1_g000002 Rmu_sc0010426.1_g000026 Rmu_ssc0000189.1_g000035 Rmu_ssc0000244.1_g000021 Rmu_ssc0000286.1_g000008
rosa_roxburghii	Rroxscaffold_3G00268440 Rroxscaffold_4G00287610 Rroxscaffold_4G00287620 Rroxscaffold_4G00287640 Rroxscaffold_5G00356670
rosa_rugosa	Rorug01G0350300 Rorug01G0350600 Rorug01G0350700 Rorug01G0350800 Rorug01G0350900
rosa_samantha	Rh1AG358400 Rh1AG358600 Rh1AG358700 Rh1AG358800 Rh1BG322100 Rh1BG322200 Rh1BG322300 Rh1BG322400 Rh1BG322500 Rh1BG322600 Rh1CG335800 Rh1CG335900 Rh1CG336000 Rh1DG352800 Rh1DG352900 Rh1DG353000 Rh1DG353100 Rh1DG353200 Rh1DG353300 Rh5AG153800 Rh6AG460200
rosa_wichuraiana	Rw1G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	348
AccIII	TCCGGA	1 cut(s)	458
AciI	CCGC	3 cut(s)	248, 251, 288
AcsI	RAATTY	2 cut(s)	46, 108
AcuI	CTGAAG	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	348
AgsI	TTSAA	5 cut(s)	42, 51, 71, 88, 265
AluBI	AGCT	7 cut(s)	67, 84, 120, 134, 150, 230, 476
AluI	AGCT	7 cut(s)	67, 84, 120, 134, 150, 230, 476
Alw26I	GTCTC	1 cut(s)	289
Aor13HI	TCCGGA	1 cut(s)	458
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	2 cut(s)	46, 108
Asp700I	GAANNNNTTC	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	225
AsuHPI	GGTGA	2 cut(s)	69, 119
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	1 cut(s)	350
BciVI	GTATCC	1 cut(s)	455
BcoDI	GTCTC	1 cut(s)	289
BfaI	CTAG	1 cut(s)	227
BfoI	RGCGCY	1 cut(s)	226
BfuI	GTATCC	1 cut(s)	455
BisI	GCNGC	2 cut(s)	231, 251
BlsI	GCNGC	2 cut(s)	232, 252
BmiI	GGNNCC	1 cut(s)	397
BpuEI	CTTGAG	3 cut(s)	142, 172, 314
BsaJI	CCNNGG	1 cut(s)	466
BsaWI	WCCGGW	1 cut(s)	458
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse1I	ACTGG	1 cut(s)	317
BseAI	TCCGGA	1 cut(s)	458
BseDI	CCNNGG	1 cut(s)	466
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	3 cut(s)	226, 356, 359
BseXI	GCAGC	1 cut(s)	217
Bsh1285I	CGRYCG	1 cut(s)	282
BsiEI	CGRYCG	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	459
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmAI	GTCTC	1 cut(s)	289
BsmBI	CGTCTC	1 cut(s)	289
Bsp13I	TCCGGA	1 cut(s)	458
Bsp143I	GATC	1 cut(s)	279
BspACI	CCGC	3 cut(s)	248, 251, 288
BspEI	TCCGGA	1 cut(s)	458
BspLI	GGNNCC	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	466
BssMI	GATC	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	467
Bst6I	CTCTTC	1 cut(s)	180
BstDSI	CCRYGG	1 cut(s)	466
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	1 cut(s)	282
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	279
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	217
BsuI	GTATCC	1 cut(s)	455
BtgI	CCRYGG	1 cut(s)	466
CfoI	GCGC	1 cut(s)	225
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
EciI	GGCGGA	2 cut(s)	237, 277
Eco57I	CTGAAG	1 cut(s)	320
Esp3I	CGTCTC	1 cut(s)	289
Fnu4HI	GCNGC	2 cut(s)	231, 251
Fsp4HI	GCNGC	2 cut(s)	231, 251
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	2 cut(s)	231, 251
HaeII	RGCGCY	1 cut(s)	226
HapII	CCGG	1 cut(s)	459
HhaI	GCGC	1 cut(s)	225
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	118
HinfI	GANTC	7 cut(s)	17, 38, 74, 124, 142, 160, 389
HpaII	CCGG	1 cut(s)	459
HphI	GGTGA	2 cut(s)	69, 119
Hpy166II	GTNNAC	2 cut(s)	355, 424
Hpy188I	TCNGA	1 cut(s)	385
Hpy188III	TCNNGA	5 cut(s)	42, 269, 277, 412, 459
Hpy8I	GTNNAC	2 cut(s)	355, 424
HpyAV	CCTTC	2 cut(s)	207, 449
HpyCH4III	ACNGT	1 cut(s)	467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	256
HspAI	GCGC	1 cut(s)	223
Kpn2I	TCCGGA	1 cut(s)	458
Kzo9I	GATC	1 cut(s)	279
LmnI	GCTCC	1 cut(s)	401
LpnPI	CCDG	9 cut(s)	34, 69, 105, 298, 311, 334, 378, 397, 472
Lsp1109I	GCAGC	1 cut(s)	217
MaeI	CTAG	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	1 cut(s)	281
MboI	GATC	1 cut(s)	279
MboII	GAAGA	6 cut(s)	83, 169, 197, 313, 328, 337
MluCI	AATT	2 cut(s)	46, 108
MlyI	GAGTC	1 cut(s)	133
MroI	TCCGGA	1 cut(s)	458
MroXI	GAANNNNTTC	1 cut(s)	260
MseI	TTAA	3 cut(s)	11, 29, 215
MspI	CCGG	1 cut(s)	459
MwoI	GCNNNNNNNGC	1 cut(s)	256
NdeII	GATC	1 cut(s)	279
NlaIV	GGNNCC	1 cut(s)	397
NmuCI	GTSAC	1 cut(s)	125
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	6 cut(s)	17, 38, 74, 142, 160, 389
PflMI	CCANNNNNTGG	1 cut(s)	348
PkrI	GCNGC	2 cut(s)	232, 252
Ple19I	CGATCG	1 cut(s)	282
PleI	GAGTC	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	397
PvuI	CGATCG	1 cut(s)	282
SaqAI	TTAA	3 cut(s)	11, 29, 215
SatI	GCNGC	2 cut(s)	231, 251
Sau3AI	GATC	1 cut(s)	279
SchI	GAGTC	1 cut(s)	133
SmlI	CTYRAG	3 cut(s)	121, 151, 329
SmoI	CTYRAG	3 cut(s)	121, 151, 329
Sse9I	AATT	2 cut(s)	46, 108
SsiI	CCGC	3 cut(s)	248, 251, 288
SspMI	CTAG	1 cut(s)	227
TaaI	ACNGT	1 cut(s)	467
TaqI	TCGA	6 cut(s)	15, 63, 99, 192, 200, 452
TasI	AATT	2 cut(s)	46, 108
TauI	GCSGC	1 cut(s)	253
TfiI	GAWTC	6 cut(s)	17, 38, 74, 142, 160, 389
Tru1I	TTAA	3 cut(s)	11, 29, 215
Tru9I	TTAA	3 cut(s)	11, 29, 215
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	125
Van91I	CCANNNNNTGG	1 cut(s)	348
XapI	RAATTY	2 cut(s)	46, 108
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.