Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001015

Physical Location & Seq

Genomic Coordinates Reverse (-)

46813519 .. 46817083

Gene Structure 3565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0350800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGTCTTCCTCCTCCAAATCGTCAGAACCCCAACTTGAAAAAACCGATCAAACCAATTTGAAACTCCACTTCCTCTATGACATCAAGAAACGCAAGATTGTTTTGGCGGAGGCAAGAGCCAACTTGGTCGATATCTTATTTGGCTTTTTGGGTTTTCCAATTAGTTCTCTCTCTAAGTTAGAGGTAGGTGCAATGCCTCAAATTTGTAAAAGCTTAGCTAGTCTCGAAGGTGATATAATTCAACCTGGATTCAATAACTGTGAGTTTTTTGAATTGAAACCAACACGTGAGGGATGGCACAACAGAGTCCTCACTTTGTTGAACGGGATTCCTGGAGATGATTTCAAGGACACCCCATTGTTTCTATGTCGGAACTGTACTTTTGAGATTCGGCTTATTCCTTACTACGTCACAACGGATCCGGCAACGCTTTGCGGGACTTGCAGAAACCCTATGGACAAGGAGGTTCCCTATGATCATGGTAATAGGGATGATAGAGGGATTGTTGCAAGAGGTAGCTTAAGATTCCTCATTTTTGATGACATGAAGATGAAGCCCGCGAGTGATTATCTTGATACCTTCGACTTGGTTAAGGGTATGGGATTTAACTGGGGTGAGCTGAAGAAAAAGGAATTGACCCTCACCTCGGAAATGACTCGTTCACTGCTCAAATCTTGTGTGGAGAAAAAGACCGTCCTGAACGAGTTATTTCTGGAAGAGCTGATGAAGGATGAATCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010143 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043170 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051179 GO:0071704 GO:0071840 GO:0090558 GO:0090626 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Transferase

Protein Analysis

247

Amino Acids

28.07

Weight (kDa)

5.76

Isoelectric Point (pI)

29.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF674	PF05056	18 - 241	1e-18	Protein of unknown function (DUF674)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07310
fragaria_vesca	FvH4_1g11890 FvH4_6g44890 FvH4_7g24041 FvH4_7g24042 FvH4_7g24050
malus_domestica	MD01G1147700.v1.1 MD07G1214700.v1.1
prunus_persica	Prupe.2G246500_v2.0.a1 Prupe.2G246600_v2.0.a1
pyrus_communis	pycom01g16640 pycom01g16650 pycom07g19710
rosa_chinensis	RchiOBHm_Chr1g0369451 RchiOBHm_Chr4g0411991
rosa_laevigata	RLG00000027125 RLG00000027126 RLG00000027127 RLG00000027128
rosa_multiflora	Rmu_sc0000039.1_g000010 Rmu_sc0001772.1_g000068 Rmu_sc0001792.1_g000008 Rmu_sc0002235.1_g000074 Rmu_sc0003605.1_g000040 Rmu_sc0003612.1_g000002 Rmu_sc0010426.1_g000026 Rmu_ssc0000189.1_g000035 Rmu_ssc0000244.1_g000021 Rmu_ssc0000286.1_g000008
rosa_roxburghii	Rroxscaffold_3G00268440 Rroxscaffold_4G00287610 Rroxscaffold_4G00287620 Rroxscaffold_4G00287640 Rroxscaffold_5G00356670
rosa_rugosa	Rorug01G0350300 Rorug01G0350600 Rorug01G0350700 Rorug01G0350800 Rorug01G0350900
rosa_samantha	Rh1AG358400 Rh1AG358600 Rh1AG358700 Rh1AG358800 Rh1BG322100 Rh1BG322200 Rh1BG322300 Rh1BG322400 Rh1BG322500 Rh1BG322600 Rh1CG335800 Rh1CG335900 Rh1CG336000 Rh1DG352800 Rh1DG352900 Rh1DG353000 Rh1DG353100 Rh1DG353200 Rh1DG353300 Rh5AG153800 Rh6AG460200
rosa_wichuraiana	Rw1G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	560
AciI	CCGC	3 cut(s)	107, 435, 558
AclWI	GGATC	2 cut(s)	413, 426
AcsI	RAATTY	1 cut(s)	201
AcuI	CTGAAG	1 cut(s)	641
AcvI	CACGTG	1 cut(s)	287
AfaI	GTAC	1 cut(s)	379
AfiI	CCNNNNNNNGG	1 cut(s)	646
AflII	CTTAAG	1 cut(s)	520
AflIII	ACRYGT	1 cut(s)	284
AgsI	TTSAA	8 cut(s)	38, 61, 242, 253, 272, 277, 322, 346
AjnI	CCWGG	2 cut(s)	244, 331
AluBI	AGCT	5 cut(s)	213, 218, 519, 619, 721
AluI	AGCT	5 cut(s)	213, 218, 519, 619, 721
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	2 cut(s)	413, 426
ApoI	RAATTY	1 cut(s)	201
AsuHPI	GGTGA	3 cut(s)	242, 626, 634
BamHI	GGATCC	1 cut(s)	418
BbrPI	CACGTG	1 cut(s)	287
BccI	CCATC	1 cut(s)	288
BciT130I	CCWGG	2 cut(s)	246, 333
BclI	TGATCA	1 cut(s)	475
BcoDI	GTCTC	1 cut(s)	227
BfaI	CTAG	1 cut(s)	219
BfrI	CTTAAG	1 cut(s)	520
BlpI	GCTNAGC	1 cut(s)	214
Bme1390I	CCNGG	2 cut(s)	246, 333
BmiI	GGNNCC	2 cut(s)	420, 468
BmrFI	CCNGG	2 cut(s)	246, 333
BmrI	ACTGGG	1 cut(s)	619
BmuI	ACTGGG	1 cut(s)	619
BpmI	CTGGAG	1 cut(s)	354
Bpu1102I	GCTNAGC	1 cut(s)	214
BsaAI	YACGTR	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	645
Bsc4I	CCNNNNNNNGG	1 cut(s)	646
Bse1I	ACTGG	1 cut(s)	614
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	246, 333
BseDI	CCNNGG	1 cut(s)	645
BseGI	GGATG	3 cut(s)	299, 496, 736
BseLI	CCNNNNNNNGG	1 cut(s)	646
BseMI	GCAATG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	614
Bsh1236I	CGCG	1 cut(s)	560
BsiSI	CCGG	1 cut(s)	422
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	1 cut(s)	646
BsmAI	GTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	451
Bsp143I	GATC	3 cut(s)	46, 418, 475
Bsp1720I	GCTNAGC	1 cut(s)	214
BspACI	CCGC	3 cut(s)	107, 435, 558
BspFNI	CGCG	1 cut(s)	560
BspLI	GGNNCC	2 cut(s)	420, 468
BspPI	GGATC	2 cut(s)	413, 426
BspQI	GCTCTTC	1 cut(s)	711
BspTI	CTTAAG	1 cut(s)	520
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	614
BssECI	CCNNGG	1 cut(s)	645
BssMI	GATC	3 cut(s)	46, 418, 475
Bst2UI	CCWGG	2 cut(s)	246, 333
Bst4CI	ACNGT	3 cut(s)	260, 377, 694
Bst6I	CTCTTC	1 cut(s)	711
BstAFI	CTTAAG	1 cut(s)	520
BstBAI	YACGTR	1 cut(s)	287
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	2 cut(s)	174, 214
BstF5I	GGATG	3 cut(s)	299, 496, 736
BstFNI	CGCG	1 cut(s)	560
BstKTI	GATC	3 cut(s)	49, 421, 478
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	3 cut(s)	46, 418, 475
BstMWI	GCNNNNNNNGC	1 cut(s)	441
BstNI	CCWGG	2 cut(s)	246, 333
BstSCI	CCNGG	2 cut(s)	244, 331
BstUI	CGCG	1 cut(s)	560
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BtsCI	GGATG	3 cut(s)	299, 496, 736
BtsI	GCAGTG	1 cut(s)	662
BtsIMutI	CAGTG	1 cut(s)	662
Cac8I	GCNNGC	1 cut(s)	558
Csp6I	GTAC	1 cut(s)	378
CviAII	CATG	3 cut(s)	479, 544, 741
CviJI	RGCY	9 cut(s)	119, 144, 213, 218, 394, 519, 556, 619, 721
CviKI_1	RGCY	9 cut(s)	119, 144, 213, 218, 394, 519, 556, 619, 721
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	2 cut(s)	174, 214
DpnI	GATC	3 cut(s)	48, 420, 477
DpnII	GATC	3 cut(s)	46, 418, 475
Eam1104I	CTCTTC	1 cut(s)	711
EarI	CTCTTC	1 cut(s)	711
EciI	GGCGGA	1 cut(s)	122
Eco32I	GATATC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	641
Eco72I	CACGTG	1 cut(s)	287
EcoRII	CCWGG	2 cut(s)	244, 331
EcoRV	GATATC	1 cut(s)	133
FaeI	CATG	3 cut(s)	482, 547, 744
FaiI	YATR	9 cut(s)	78, 236, 367, 455, 474, 480, 545, 599, 742
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	3 cut(s)	478, 543, 740
FauI	CCCGC	2 cut(s)	428, 565
FbaI	TGATCA	1 cut(s)	475
FokI	GGATG	2 cut(s)	306, 503
FspBI	CTAG	1 cut(s)	219
GsuI	CTGGAG	1 cut(s)	354
HapII	CCGG	1 cut(s)	422
Hin1II	CATG	3 cut(s)	482, 547, 744
HindIII	AAGCTT	1 cut(s)	211
HinfI	GANTC	7 cut(s)	249, 306, 328, 388, 525, 655, 734
HpaII	CCGG	1 cut(s)	422
HphI	GGTGA	3 cut(s)	242, 626, 634
Hpy166II	GTNNAC	1 cut(s)	662
Hpy188I	TCNGA	3 cut(s)	25, 372, 649
Hpy188III	TCNNGA	5 cut(s)	85, 224, 572, 697, 713
Hpy8I	GTNNAC	1 cut(s)	662
HpyAV	CCTTC	3 cut(s)	221, 589, 721
HpyCH4III	ACNGT	3 cut(s)	260, 377, 694
HpyCH4IV	ACGT	2 cut(s)	286, 408
HpyCH4V	TGCA	4 cut(s)	191, 444, 509, 740
HpyF10VI	GCNNNNNNNGC	1 cut(s)	441
HpyF3I	CTNAG	2 cut(s)	174, 214
HpySE526I	ACGT	2 cut(s)	286, 408
Hsp92II	CATG	3 cut(s)	482, 547, 744
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	3 cut(s)	46, 418, 475
LguI	GCTCTTC	1 cut(s)	711
LpnPI	CCDG	8 cut(s)	231, 258, 318, 345, 435, 595, 698, 710
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	2 cut(s)	286, 408
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	3 cut(s)	48, 420, 477
MboI	GATC	3 cut(s)	46, 418, 475
MboII	GAAGA	3 cut(s)	559, 634, 728
MflI	RGATCY	1 cut(s)	418
MluCI	AATT	6 cut(s)	55, 159, 201, 237, 272, 632
MlyI	GAGTC	2 cut(s)	315, 649
MmeI	TCCRAC	1 cut(s)	350
MseI	TTAA	3 cut(s)	521, 591, 606
MslI	CAYNNNNRTG	1 cut(s)	548
MspCI	CTTAAG	1 cut(s)	520
MspI	CCGG	1 cut(s)	422
MspR9I	CCNGG	2 cut(s)	246, 333
MvaI	CCWGG	2 cut(s)	246, 333
MvnI	CGCG	1 cut(s)	560
MwoI	GCNNNNNNNGC	1 cut(s)	441
NdeII	GATC	3 cut(s)	46, 418, 475
NlaIII	CATG	3 cut(s)	482, 547, 744
NlaIV	GGNNCC	2 cut(s)	420, 468
NmuCI	GTSAC	1 cut(s)	409
PciSI	GCTCTTC	1 cut(s)	711
PfeI	GAWTC	5 cut(s)	249, 328, 388, 525, 734
PfoI	TCCNGGA	1 cut(s)	331
PleI	GAGTC	2 cut(s)	314, 649
PmaCI	CACGTG	1 cut(s)	287
PmlI	CACGTG	1 cut(s)	287
PpsI	GAGTC	2 cut(s)	314, 649
Ppu21I	YACGTR	1 cut(s)	287
Psp6I	CCWGG	2 cut(s)	244, 331
PspCI	CACGTG	1 cut(s)	287
PspGI	CCWGG	2 cut(s)	244, 331
PspN4I	GGNNCC	2 cut(s)	420, 468
PsuI	RGATCY	1 cut(s)	418
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
RseI	CAYNNNNRTG	1 cut(s)	548
SapI	GCTCTTC	1 cut(s)	711
SaqAI	TTAA	3 cut(s)	521, 591, 606
Sau3AI	GATC	3 cut(s)	46, 418, 475
SchI	GAGTC	2 cut(s)	315, 649
ScrFI	CCNGG	2 cut(s)	246, 333
SmiMI	CAYNNNNRTG	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
Sse9I	AATT	6 cut(s)	55, 159, 201, 237, 272, 632
SsiI	CCGC	3 cut(s)	107, 435, 558
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	244, 331
TaaI	ACNGT	3 cut(s)	260, 377, 694
TaiI	ACGT	2 cut(s)	289, 411
TaqI	TCGA	3 cut(s)	129, 225, 582
TasI	AATT	6 cut(s)	55, 159, 201, 237, 272, 632
TatI	WGTACW	1 cut(s)	377
TfiI	GAWTC	5 cut(s)	249, 328, 388, 525, 734
Tru1I	TTAA	3 cut(s)	521, 591, 606
Tru9I	TTAA	3 cut(s)	521, 591, 606
TscAI	CASTG	1 cut(s)	669
TseFI	GTSAC	1 cut(s)	409
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	3 cut(s)	560, 566, 740
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	1 cut(s)	669
Vha464I	CTTAAG	1 cut(s)	520
XapI	RAATTY	1 cut(s)	201
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.