Rmu_ssc0000286.1_g000008

Transferase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000286.1
Physical Location & Seq
Reverse (-)
36889 .. 37636
748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000286.1_g000008.1.cds

Sequence Viewer

Length: 528 bp
atgagaaacttaatcgaatccagcaacttaacaagagattcaagaaattcaaacccagaaatcgagcttgaagaatcaccgagcttgaacccagaaatcgaacccaaaatttctccaagcttgagtcaccgagcttcacagaatcacagcttgaggaagaatcaaagagagcaaaccaagaatgaagagttcgagccttcgactgaaaagtgtaaacccagaacttttttaagagagctcctagccgcctcctcttgccctccgccaccgaagcctcccaatctcgacctcccgatcgtctccgccaagcaccttacgaacgccaactggaagaacgatgacctcaagccctacgccatcttctgggtcgaccccgacctcctcctcgccaccaaatccgacgattccagctccacccgacccatctggaatggggcttcactttccccctctccttctccctccacgactccttcctccccctcgaaatcttccactccaaaccctccgtcactcccaaacccttag

Protein Analysis

175

Amino Acids

19.34

Weight (kDa)

6.31

Isoelectric Point (pI)

76.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 363
AccI GTMKAC 1 cut(s) 369
AciI CCGC 3 cut(s) 246, 263, 303
AcsI RAATTY 2 cut(s) 46, 108
AfiI CCNNNNNNNGG 1 cut(s) 363
AgsI TTSAA 4 cut(s) 42, 51, 71, 88
AluBI AGCT 7 cut(s) 67, 84, 120, 134, 150, 238, 411
AluI AGCT 7 cut(s) 67, 84, 120, 134, 150, 238, 411
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 1 cut(s) 304
ApoI RAATTY 2 cut(s) 46, 108
ArsI GACNNNNNNTTYG 2 cut(s) 494, 526
AsuHPI GGTGA 2 cut(s) 69, 119
BanII GRGCYC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 240
BccI CCATC 2 cut(s) 365, 431
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 1 cut(s) 242
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
BpuEI CTTGAG 3 cut(s) 142, 172, 329
Bsc4I CCNNNNNNNGG 1 cut(s) 363
Bse1I ACTGG 1 cut(s) 332
BseLI CCNNNNNNNGG 1 cut(s) 363
BseNI ACTGG 1 cut(s) 332
BseRI GAGGAG 3 cut(s) 241, 371, 374
Bsh1285I CGRYCG 1 cut(s) 297
BsiEI CGRYCG 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 363
BsmAI GTCTC 1 cut(s) 304
BsmBI CGTCTC 1 cut(s) 304
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 1 cut(s) 294
BspACI CCGC 3 cut(s) 246, 263, 303
BsrI ACTGG 1 cut(s) 332
BssMI GATC 1 cut(s) 294
Bst6I CTCTTC 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 525
BstKTI GATC 1 cut(s) 297
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 1 cut(s) 294
BstMCI CGRYCG 1 cut(s) 297
BstMWI GCNNNNNNNGC 1 cut(s) 271
DdeI CTNAG 1 cut(s) 525
DpnI GATC 1 cut(s) 296
DpnII GATC 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
EciI GGCGGA 2 cut(s) 252, 292
Ecl136II GAGCTC 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 240
Eco53kI GAGCTC 1 cut(s) 238
EcoICRI GAGCTC 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 304
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 1 cut(s) 246
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 1 cut(s) 242
GluI GCNGC 1 cut(s) 246
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HindIII AAGCTT 1 cut(s) 118
HinfI GANTC 8 cut(s) 17, 38, 74, 124, 142, 160, 404, 469
HphI GGTGA 2 cut(s) 69, 119
Hpy166II GTNNAC 2 cut(s) 215, 370
Hpy188I TCNGA 1 cut(s) 400
Hpy188III TCNNGA 4 cut(s) 42, 284, 292, 427
Hpy8I GTNNAC 2 cut(s) 215, 370
Hpy99I CGWCG 1 cut(s) 404
HpyAV CCTTC 3 cut(s) 207, 465, 483
HpyF10VI GCNNNNNNNGC 1 cut(s) 271
HpyF3I CTNAG 1 cut(s) 525
Kzo9I GATC 1 cut(s) 294
LmnI GCTCC 2 cut(s) 243, 416
LpnPI CCDG 8 cut(s) 34, 69, 105, 232, 313, 349, 412, 421
MaeI CTAG 1 cut(s) 242
MaeIII GTNAC 2 cut(s) 125, 510
MalI GATC 1 cut(s) 296
MboI GATC 1 cut(s) 294
MboII GAAGA 6 cut(s) 83, 169, 197, 343, 352, 483
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 2 cut(s) 46, 108
MlyI GAGTC 2 cut(s) 133, 463
MmeI TCCRAC 1 cut(s) 423
MseI TTAA 3 cut(s) 11, 29, 230
MwoI GCNNNNNNNGC 1 cut(s) 271
NdeII GATC 1 cut(s) 294
NmuCI GTSAC 2 cut(s) 125, 510
PfeI GAWTC 6 cut(s) 17, 38, 74, 142, 160, 404
PflMI CCANNNNNTGG 1 cut(s) 363
PkrI GCNGC 1 cut(s) 247
Ple19I CGATCG 1 cut(s) 297
PleI GAGTC 2 cut(s) 132, 463
PpsI GAGTC 2 cut(s) 132, 463
Psp124BI GAGCTC 1 cut(s) 240
PvuI CGATCG 1 cut(s) 297
SacI GAGCTC 1 cut(s) 240
SalI GTCGAC 1 cut(s) 368
SaqAI TTAA 3 cut(s) 11, 29, 230
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 1 cut(s) 294
SchI GAGTC 2 cut(s) 133, 463
SduI GDGCHC 1 cut(s) 240
SmlI CTYRAG 3 cut(s) 121, 151, 344
SmoI CTYRAG 3 cut(s) 121, 151, 344
Sse9I AATT 2 cut(s) 46, 108
SsiI CCGC 3 cut(s) 246, 263, 303
SspMI CTAG 1 cut(s) 242
SstI GAGCTC 1 cut(s) 240
TaqI TCGA 8 cut(s) 15, 63, 99, 192, 200, 285, 369, 485
TasI AATT 2 cut(s) 46, 108
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 6 cut(s) 17, 38, 74, 142, 160, 404
Tru1I TTAA 3 cut(s) 11, 29, 230
Tru9I TTAA 3 cut(s) 11, 29, 230
TseFI GTSAC 2 cut(s) 125, 510
Tsp45I GTSAC 2 cut(s) 125, 510
TspDTI ATGAA 1 cut(s) 198
TspGWI ACGGA 1 cut(s) 498
Van91I CCANNNNNTGG 1 cut(s) 363
XapI RAATTY 2 cut(s) 46, 108
XmiI GTMKAC 1 cut(s) 369
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.