Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008972

Physical Location & Seq

Genomic Coordinates Forward (+)

24678935 .. 24681109

Gene Structure 2175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g22270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAGTCCTGCCCTTCGATAAAGAACATCCTCCTCCTCGATTCTGAAGGGAAACGTGTGGCTGTCAAGTATTATTCAGAGGAGGACTGGCCAACGAATACTGCCAAAGAATCTTTTGAGAAAGCTGTATTTACTAAAACTCAAAAGACAAATGCGCGGACAGAAGCTGAGATAGCAATGTTCGAGGGCACCATTGTAGTTTACAAGTTTGTTCAAGACCTTCACTTTTTTGTTACTGGTGGTGAAAATGAAAACGAGCTCATTTTAGCCACAGTTCTGCAGGGATTTTTTGATGCGGTTGGCATTCTCCTGAGAGGCAATGTGGACAAGAAGGAGGCACTTGAGAATTTGGATCTCATTTTACTATGCCTTGATGAAATTGTGGACGGAGGTATTATTCTCGAGACCGATTCAAATGTTATAGCAAGTAAGGTTGCAAGTCACAGTATTGATGCTGGAGCTCCGTTGTCTGAGCAGACAATAAGTCAAGCTTTGGCAACTGCCCGCGAACATCTAGCCAGACAACTTCTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clat_adaptor_s

Protein Analysis

179

Amino Acids

19.6

Weight (kDa)

4.72

Isoelectric Point (pI)

35.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60970
fragaria_vesca	FvH4_3g06280
malus_domestica	MD05G1290800.v1.1 MD10G1266600.v1.1 MD16G1203300.v1.1
prunus_persica	Prupe.4G074900_v2.0.a1 Prupe.4G074900_v2.0.a1
pyrus_communis	pycom10g22270
rosa_chinensis	RchiOBHm_Chr5g0013031
rosa_laevigata	RLG00000031978
rosa_multiflora	Rmu_sc0003304.1_g000036 Rmu_sc0003892.1_g000019 Rmu_sc0037731.1_g000003
rosa_roxburghii	Rroxscaffold_1G00063540
rosa_rugosa	Rorug01G0350300 Rorug05G0006400 Rorug05G0006500 Rorug05G0006600 Rorug05G0006700 Rorug05G0006700
rosa_samantha	Rh5DG096200
rosa_wichuraiana	Rw5G008800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AccII	CGCG	2 cut(s)	157, 507
AciI	CCGC	3 cut(s)	157, 296, 505
AclWI	GGATC	1 cut(s)	360
AcoI	YGGCCR	1 cut(s)	89
AcsI	RAATTY	1 cut(s)	346
AcuI	CTGAAG	1 cut(s)	66
AflIII	ACRYGT	1 cut(s)	55
AgsI	TTSAA	2 cut(s)	215, 414
AhdI	GACNNNNNGTC	1 cut(s)	483
AluBI	AGCT	5 cut(s)	125, 167, 259, 461, 491
AluI	AGCT	5 cut(s)	125, 167, 259, 461, 491
Alw21I	GWGCWC	2 cut(s)	261, 463
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	1 cut(s)	360
AlwNI	CAGNNNCTG	1 cut(s)	167
Ama87I	CYCGRG	1 cut(s)	401
AoxI	GGCC	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	346
AspLEI	GCGC	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	254
AvaI	CYCGRG	1 cut(s)	401
BaeGI	GKGCMC	1 cut(s)	191
BalI	TGGCCA	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	188
BanII	GRGCYC	2 cut(s)	261, 463
Bbv12I	GWGCWC	2 cut(s)	261, 463
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	1 cut(s)	515
BfmI	CTRYAG	1 cut(s)	278
BmeRI	GACNNNNNGTC	1 cut(s)	483
BmeT110I	CYCGRG	1 cut(s)	401
BmiI	GGNNCC	1 cut(s)	190
BmsI	GCATC	2 cut(s)	283, 442
BpmI	CTGGAG	1 cut(s)	477
BpuEI	CTTGAG	1 cut(s)	362
BsaI	GGTCTC	1 cut(s)	398
Bse1I	ACTGG	2 cut(s)	92, 241
Bse3DI	GCAATG	2 cut(s)	183, 325
BseGI	GGATG	1 cut(s)	27
BseMI	GCAATG	2 cut(s)	183, 325
BseMII	CTCAG	3 cut(s)	159, 302, 462
BseNI	ACTGG	2 cut(s)	92, 241
BseRI	GAGGAG	3 cut(s)	23, 26, 95
BseSI	GKGCMC	1 cut(s)	191
Bsh1236I	CGCG	2 cut(s)	157, 507
BshFI	GGCC	1 cut(s)	91
BshNI	GGYRCC	1 cut(s)	188
BsiHKAI	GWGCWC	2 cut(s)	261, 463
BsiHKCI	CYCGRG	1 cut(s)	401
BsmAI	GTCTC	1 cut(s)	398
BsmI	GAATGC	1 cut(s)	303
BsnI	GGCC	1 cut(s)	91
Bso31I	GGTCTC	1 cut(s)	398
BsoBI	CYCGRG	1 cut(s)	401
Bsp1286I	GDGCHC	3 cut(s)	191, 261, 463
Bsp143I	GATC	1 cut(s)	352
BspACI	CCGC	3 cut(s)	157, 296, 505
BspANI	GGCC	1 cut(s)	91
BspCNI	CTCAG	3 cut(s)	160, 303, 463
BspFNI	CGCG	2 cut(s)	157, 507
BspLI	GGNNCC	1 cut(s)	190
BspMAI	CTGCAG	1 cut(s)	282
BspPI	GGATC	1 cut(s)	360
BspT107I	GGYRCC	1 cut(s)	188
BspTNI	GGTCTC	1 cut(s)	398
BsrDI	GCAATG	2 cut(s)	183, 325
BsrI	ACTGG	2 cut(s)	92, 241
BssMI	GATC	1 cut(s)	352
Bst4CI	ACNGT	2 cut(s)	274, 446
BstC8I	GCNNGC	1 cut(s)	505
BstDEI	CTNAG	3 cut(s)	168, 311, 471
BstF5I	GGATG	1 cut(s)	27
BstFNI	CGCG	2 cut(s)	157, 507
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	1 cut(s)	355
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstSFI	CTRYAG	1 cut(s)	278
BstSLI	GKGCMC	1 cut(s)	191
BstUI	CGCG	2 cut(s)	157, 507
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	505
CaiI	CAGNNNCTG	1 cut(s)	167
CfoI	GCGC	1 cut(s)	157
CviJI	RGCY	9 cut(s)	62, 91, 125, 167, 259, 269, 461, 491, 518
CviKI_1	RGCY	9 cut(s)	62, 91, 125, 167, 259, 269, 461, 491, 518
DdeI	CTNAG	3 cut(s)	168, 311, 471
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
DriI	GACNNNNNGTC	1 cut(s)	483
EaeI	YGGCCR	1 cut(s)	89
Eam1105I	GACNNNNNGTC	1 cut(s)	483
Ecl136II	GAGCTC	2 cut(s)	259, 461
Eco24I	GRGCYC	2 cut(s)	261, 463
Eco31I	GGTCTC	1 cut(s)	398
Eco53kI	GAGCTC	2 cut(s)	259, 461
Eco57I	CTGAAG	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	401
EcoICRI	GAGCTC	2 cut(s)	259, 461
EcoT38I	GRGCYC	2 cut(s)	261, 463
FaiI	YATR	2 cut(s)	367, 422
FalI	AAGNNNNNCTT	2 cut(s)	475, 507
FauI	CCCGC	1 cut(s)	512
FokI	GGATG	1 cut(s)	14
FriOI	GRGCYC	2 cut(s)	261, 463
FspBI	CTAG	1 cut(s)	515
GlaI	GCGC	1 cut(s)	156
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	1 cut(s)	91
HhaI	GCGC	1 cut(s)	157
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	4 cut(s)	5, 41, 110, 410
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	3 cut(s)	202, 325, 385
Hpy188I	TCNGA	3 cut(s)	46, 79, 472
Hpy188III	TCNNGA	4 cut(s)	215, 310, 401, 403
Hpy8I	GTNNAC	3 cut(s)	202, 325, 385
HpyAV	CCTTC	4 cut(s)	24, 41, 230, 325
HpyCH4III	ACNGT	2 cut(s)	274, 446
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	2 cut(s)	280, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	3 cut(s)	168, 311, 471
HpySE526I	ACGT	1 cut(s)	55
HspAI	GCGC	1 cut(s)	155
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	2 cut(s)	458, 466
LpnPI	CCDG	7 cut(s)	22, 73, 222, 266, 323, 441, 532
LweI	GCATC	2 cut(s)	283, 442
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	1 cut(s)	55
MaeIII	GTNAC	2 cut(s)	232, 440
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	3 cut(s)	191, 261, 463
MlsI	TGGCCA	1 cut(s)	91
MluCI	AATT	2 cut(s)	346, 378
MluNI	TGGCCA	1 cut(s)	91
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	9 cut(s)	41, 44, 47, 73, 76, 178, 308, 328, 383
Mox20I	TGGCCA	1 cut(s)	91
MscI	TGGCCA	1 cut(s)	91
MseI	TTAA	1 cut(s)	531
Msp20I	TGGCCA	1 cut(s)	91
Mva1269I	GAATGC	1 cut(s)	303
MvnI	CGCG	2 cut(s)	157, 507
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	1 cut(s)	352
NlaIV	GGNNCC	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	440
PaeR7I	CTCGAG	1 cut(s)	401
PctI	GAATGC	1 cut(s)	303
PfeI	GAWTC	3 cut(s)	41, 110, 410
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp124BI	GAGCTC	2 cut(s)	261, 463
PspN4I	GGNNCC	1 cut(s)	190
PstI	CTGCAG	1 cut(s)	282
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	352
SacI	GAGCTC	2 cut(s)	261, 463
SaqAI	TTAA	1 cut(s)	531
Sau3AI	GATC	1 cut(s)	352
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	3 cut(s)	191, 261, 463
SetI	ASST	9 cut(s)	58, 127, 169, 222, 261, 394, 435, 463, 493
SfaNI	GCATC	2 cut(s)	283, 442
SfcI	CTRYAG	1 cut(s)	278
Sfr274I	CTCGAG	1 cut(s)	401
SlaI	CTCGAG	1 cut(s)	401
SmlI	CTYRAG	2 cut(s)	341, 401
SmoI	CTYRAG	2 cut(s)	341, 401
Sse9I	AATT	2 cut(s)	346, 378
SsiI	CCGC	3 cut(s)	157, 296, 505
SspMI	CTAG	1 cut(s)	515
SstI	GAGCTC	2 cut(s)	261, 463
TaaI	ACNGT	2 cut(s)	274, 446
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	4 cut(s)	17, 39, 183, 402
TaqII	GACCGA	1 cut(s)	422
TasI	AATT	2 cut(s)	346, 378
TfiI	GAWTC	3 cut(s)	41, 110, 410
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TseFI	GTSAC	1 cut(s)	440
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	2 cut(s)	264, 390
TspGWI	ACGGA	2 cut(s)	402, 453
XapI	RAATTY	1 cut(s)	346
XhoI	CTCGAG	1 cut(s)	401
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.