Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004673

Physical Location & Seq

Genomic Coordinates Forward (+)

23192146 .. 23195103

Gene Structure 2958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G62640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGCTAATGCATCTGGGTTCTTCACTCATCCTTCAATTCCTAACTTGCGAAGCAGAATCCATGTTCCGGTTAGAGTTTCTGGATCTGGGTTTTGCGTTTCCAATCGATTCTCTAAGAGGGTTTTGTGCTCTAGCGTCAGCTCCGTCGATAAGGATGCTTCGTCTTCTCCTTCTCAATATCAACGACCCAGGCTAGTGCCGAGTGGCTGCAAATTGATTGGATGTGGATCAGCAGTTCCAAGTCTTCTGATTTCTAATGATGATCTCGCTAAAATAGTTGATACTAATGATGAATGGATTGCTACTCGTACTGGTATTCGCAACCGTCGAGTTGTCTCAGGCAAAGATAGCTTGGTTGGCTTAGCAGTAGAAGCAGCAACCAAAGCTCTTGAAATGGCTGAGGTTGTTCCTGAAGATATTGACTTAGTCTTGATGTGTACTTCCACTCCTGATGATCTATTTGGTGCTGCTCCACAGATTCAAAAGGCACTTGGTTGCACAAAGAACCCATTGGCTTATGATATCACAGCTGCTTGTAGTGGATTTGTTTTGGGTCTAGTTTCAGCTGCTTGTCATATAAGGGGAGGCGGTTTTAAGAACGTTTTAGTGATCGGAGCTGATTCTTTGTCTCGGTTTGTTGATTGGACGGATAGAGGGACTTGCATTCTATTTGGAGATGCTGCTGGTGCTGTGGTTGTTCAGGCTTGTGATATTGAAGATGATGGTTTGTTCAGTTTTGATGTGCACAGCGATGGGGATGGTCGAAGACATTTGAATGCTTCTGTTAAAGAATCCCAAAACGATGGTGAATCAAGCTCCAATGGCTCGGTGTTTGGAGACTTTCCACCAAAACAATCTTCATATTCTTGTATTCAGATGAATGGAAAAGAGGTCTTTCGCTTTGCTGTCAAATGTGTTCCTCAATCTATTGAATCTGCTTTACAAAAAGCTGGTCTTCCTGCTTCTGCCATCGACTGGCTCCTCCTCCACCAGGCGAACCAGAGAATAATAGACTCTGTGGCTACAAGGCTGCATTTCCCACCAGAGAGAGTCATATCGAATTTGGCTAATTATGGTAACACGAGCGCTGCTTCGATTCCGCTGGCTCTTGATGAGGCAGTGAGAAGCGGAAAAGTTAAACCAGGACATACCATAGCGACATCCGGTTTTGGAGCCGGTTTAACGTGGGGATCAGCAATTATGCGATGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko01100 ko01212 map00061 map01100 map01212

Pfam Domains

Protein Families

ACP_syn_III ACP_syn_III_C

Protein Analysis

404

Amino Acids

42.85

Weight (kDa)

7.05

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACP_syn_III	PF08545	173 - 252	5.9e-28	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
ACP_syn_III_C	PF08541	314 - 403	8.3e-38	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62640 AT1G62640
fragaria_vesca	FvH4_5g00250
malus_domestica	MD04G1085000.v1.1 MD06G1063300.v1.1 MD06G1063400.v1.1 MD08G1135900.v1.1 MD09G1022600.v1.1 MD12G1033000.v1.1
prunus_persica	Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1
pyrus_communis	pycom04g07590 pycom06g06010 pycom08g11500
rosa_chinensis	RchiOBHm_Chr7g0202391
rosa_laevigata	RLG00000003604
rosa_multiflora	Rmu_co8440841.1_g000001 Rmu_sc0000266.1_g000012
rosa_roxburghii	Rroxscaffold_3G00254630
rosa_rugosa	Rorug07G0070200 Rorug07G0070300
rosa_samantha	Rh7AG197800 Rh7BG198800 Rh7CG208800 Rh7DG204500
rosa_wichuraiana	Rw7G017340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	975
AciI	CCGC	3 cut(s)	588, 1100, 1128
AclI	AACGTT	1 cut(s)	600
AclWI	GGATC	3 cut(s)	91, 235, 1198
AcsI	RAATTY	1 cut(s)	1060
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	2 cut(s)	310, 439
AfeI	AGCGCT	1 cut(s)	1087
AfiI	CCNNNNNNNGG	3 cut(s)	67, 975, 991
AgsI	TTSAA	6 cut(s)	36, 392, 482, 716, 775, 932
AjnI	CCWGG	3 cut(s)	188, 990, 1141
AjuI	GAANNNNNNNTTGG	2 cut(s)	841, 873
AloI	GAACNNNNNNTCC	2 cut(s)	219, 251
AluBI	AGCT	8 cut(s)	141, 351, 386, 530, 566, 617, 816, 950
AluI	AGCT	8 cut(s)	141, 351, 386, 530, 566, 617, 816, 950
Alw21I	GWGCWC	2 cut(s)	131, 747
Alw26I	GTCTC	3 cut(s)	340, 633, 831
Alw44I	GTGCAC	1 cut(s)	743
AlwI	GGATC	3 cut(s)	91, 235, 1198
Aor51HI	AGCGCT	1 cut(s)	1087
ApaLI	GTGCAC	1 cut(s)	743
ApeKI	GCWGC	8 cut(s)	207, 374, 467, 530, 566, 680, 1030, 1088
ApoI	RAATTY	1 cut(s)	1060
ArsI	GACNNNNNNTTYG	2 cut(s)	937, 969
AspLEI	GCGC	1 cut(s)	1088
AsuHPI	GGTGA	1 cut(s)	818
BaeGI	GKGCMC	1 cut(s)	747
BauI	CACGAG	1 cut(s)	1081
BbsI	GAAGAC	4 cut(s)	156, 236, 772, 947
Bbv12I	GWGCWC	2 cut(s)	131, 747
BbvCI	CCTCAGC	1 cut(s)	399
BbvI	GCAGC	8 cut(s)	194, 386, 454, 517, 553, 667, 1017, 1075
BccI	CCATC	6 cut(s)	716, 746, 752, 797, 977, 1200
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BciT130I	CCWGG	3 cut(s)	190, 992, 1143
BcoDI	GTCTC	3 cut(s)	340, 633, 831
BfaI	CTAG	3 cut(s)	132, 194, 557
BfoI	RGCGCY	1 cut(s)	1089
BisI	GCNGC	8 cut(s)	208, 375, 468, 531, 567, 681, 1031, 1089
BlpI	GCTNAGC	1 cut(s)	361
BlsI	GCNGC	8 cut(s)	209, 376, 469, 532, 568, 682, 1032, 1090
Bme1390I	CCNGG	3 cut(s)	190, 992, 1143
BmiI	GGNNCC	2 cut(s)	980, 1174
BmrFI	CCNGG	3 cut(s)	190, 992, 1143
BmsI	GCATC	3 cut(s)	20, 145, 667
BpiI	GAAGAC	4 cut(s)	156, 236, 772, 947
Bpu10I	CCTNAGC	1 cut(s)	399
Bpu1102I	GCTNAGC	1 cut(s)	361
Bsa29I	ATCGAT	1 cut(s)	106
BsaBI	GATNNNNATC	1 cut(s)	226
BsaJI	CCNNGG	1 cut(s)	188
BsaWI	WCCGGW	2 cut(s)	67, 1163
BsaXI	ACNNNNNCTCC	2 cut(s)	430, 460
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 975, 991
Bse118I	RCCGGY	1 cut(s)	1175
Bse1I	ACTGG	2 cut(s)	316, 980
Bse8I	GATNNNNATC	1 cut(s)	226
BseBI	CCWGG	3 cut(s)	190, 992, 1143
BseCI	ATCGAT	1 cut(s)	106
BseDI	CCNNGG	1 cut(s)	188
BseGI	GGATG	5 cut(s)	28, 160, 227, 763, 1160
BseJI	GATNNNNATC	1 cut(s)	226
BseLI	CCNNNNNNNGG	3 cut(s)	67, 975, 991
BseMII	CTCAG	2 cut(s)	351, 390
BseNI	ACTGG	2 cut(s)	316, 980
BseRI	GAGGAG	2 cut(s)	971, 974
BseSI	GKGCMC	1 cut(s)	747
BseXI	GCAGC	8 cut(s)	194, 386, 454, 517, 553, 667, 1017, 1075
BshVI	ATCGAT	1 cut(s)	106
BsiHKAI	GWGCWC	2 cut(s)	131, 747
BsiSI	CCGG	3 cut(s)	68, 1164, 1176
BslFI	GGGAC	1 cut(s)	670
BslI	CCNNNNNNNGG	3 cut(s)	67, 975, 991
BsmAI	GTCTC	3 cut(s)	340, 633, 831
BsmFI	GGGAC	1 cut(s)	670
BsmI	GAATGC	2 cut(s)	663, 781
Bsp1286I	GDGCHC	2 cut(s)	131, 747
Bsp143I	GATC	6 cut(s)	83, 227, 262, 454, 609, 1190
Bsp1720I	GCTNAGC	1 cut(s)	361
BspACI	CCGC	3 cut(s)	588, 1100, 1128
BspCNI	CTCAG	2 cut(s)	350, 391
BspDI	ATCGAT	1 cut(s)	106
BspLI	GGNNCC	2 cut(s)	980, 1174
BspPI	GGATC	3 cut(s)	91, 235, 1198
BsrFI	RCCGGY	1 cut(s)	1175
BsrI	ACTGG	2 cut(s)	316, 980
BssAI	RCCGGY	1 cut(s)	1175
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	6 cut(s)	83, 227, 262, 454, 609, 1190
BssSI	CACGAG	1 cut(s)	1081
Bst2BI	CACGAG	1 cut(s)	1081
Bst2UI	CCWGG	3 cut(s)	190, 992, 1143
Bst4CI	ACNGT	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	1104
BstDEI	CTNAG	5 cut(s)	114, 337, 361, 399, 424
BstENI	CCTNNNNNAGG	1 cut(s)	989
BstF5I	GGATG	5 cut(s)	28, 160, 227, 763, 1160
BstH2I	RGCGCY	1 cut(s)	1089
BstHHI	GCGC	1 cut(s)	1088
BstKTI	GATC	6 cut(s)	86, 230, 265, 457, 612, 1193
BstMAI	GTCTC	3 cut(s)	340, 633, 831
BstMBI	GATC	6 cut(s)	83, 227, 262, 454, 609, 1190
BstMWI	GCNNNNNNNGC	6 cut(s)	348, 357, 371, 383, 686, 822
BstNI	CCWGG	3 cut(s)	190, 992, 1143
BstSCI	CCNGG	3 cut(s)	188, 990, 1141
BstSLI	GKGCMC	1 cut(s)	747
BstV1I	GCAGC	8 cut(s)	194, 386, 454, 517, 553, 667, 1017, 1075
BstV2I	GAAGAC	4 cut(s)	156, 236, 772, 947
BstX2I	RGATCY	1 cut(s)	83
BstXI	CCANNNNNNTGG	1 cut(s)	803
BstYI	RGATCY	1 cut(s)	83
Bsu15I	ATCGAT	1 cut(s)	106
BsuTUI	ATCGAT	1 cut(s)	106
BtgZI	GCGATG	1 cut(s)	765
BtsCI	GGATG	5 cut(s)	28, 160, 227, 763, 1160
BtsI	GCAGTG	1 cut(s)	1125
BtsIMutI	CAGTG	1 cut(s)	1125
Cac8I	GCNNGC	1 cut(s)	1104
CfoI	GCGC	1 cut(s)	1088
Cfr10I	RCCGGY	1 cut(s)	1175
ClaI	ATCGAT	1 cut(s)	106
CseI	GACGC	1 cut(s)	124
Csp6I	GTAC	2 cut(s)	309, 438
CviAII	CATG	1 cut(s)	62
CviQI	GTAC	2 cut(s)	309, 438
DdeI	CTNAG	5 cut(s)	114, 337, 361, 399, 424
DpnI	GATC	6 cut(s)	85, 229, 264, 456, 611, 1192
DpnII	GATC	6 cut(s)	83, 227, 262, 454, 609, 1190
Eco32I	GATATC	1 cut(s)	523
Eco47III	AGCGCT	1 cut(s)	1087
Eco57I	CTGAAG	1 cut(s)	432
EcoNI	CCTNNNNNAGG	1 cut(s)	989
EcoRII	CCWGG	3 cut(s)	188, 990, 1141
EcoRV	GATATC	1 cut(s)	523
EcoT22I	ATGCAT	1 cut(s)	13
FaeI	CATG	1 cut(s)	65
FalI	AAGNNNNNCTT	2 cut(s)	939, 971
FaqI	GGGAC	1 cut(s)	670
FatI	CATG	1 cut(s)	61
Fnu4HI	GCNGC	8 cut(s)	208, 375, 468, 531, 567, 681, 1031, 1089
FokI	GGATG	5 cut(s)	15, 167, 234, 770, 1147
Fsp4HI	GCNGC	8 cut(s)	208, 375, 468, 531, 567, 681, 1031, 1089
FspBI	CTAG	3 cut(s)	132, 194, 557
GlaI	GCGC	1 cut(s)	1087
GluI	GCNGC	8 cut(s)	208, 375, 468, 531, 567, 681, 1031, 1089
HaeII	RGCGCY	1 cut(s)	1089
HapII	CCGG	3 cut(s)	68, 1164, 1176
HgaI	GACGC	1 cut(s)	124
HhaI	GCGC	1 cut(s)	1088
Hin1II	CATG	1 cut(s)	65
Hin6I	GCGC	1 cut(s)	1086
HinP1I	GCGC	1 cut(s)	1086
HpaII	CCGG	3 cut(s)	68, 1164, 1176
HphI	GGTGA	1 cut(s)	818
Hpy166II	GTNNAC	2 cut(s)	438, 745
Hpy188I	TCNGA	3 cut(s)	249, 614, 876
Hpy188III	TCNNGA	6 cut(s)	81, 389, 410, 430, 449, 1109
Hpy8I	GTNNAC	2 cut(s)	438, 745
Hpy99I	CGWCG	2 cut(s)	149, 330
HpyAV	CCTTC	2 cut(s)	42, 180
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	2 cut(s)	600, 1184
HpyCH4V	TGCA	6 cut(s)	11, 210, 498, 663, 745, 1033
HpyF10VI	GCNNNNNNNGC	6 cut(s)	348, 357, 371, 383, 686, 822
HpyF3I	CTNAG	5 cut(s)	114, 337, 361, 399, 424
HpySE526I	ACGT	2 cut(s)	600, 1184
Hsp92II	CATG	1 cut(s)	65
HspAI	GCGC	1 cut(s)	1086
Kzo9I	GATC	6 cut(s)	83, 227, 262, 454, 609, 1190
LmnI	GCTCC	6 cut(s)	146, 475, 614, 821, 984, 1172
Lsp1109I	GCAGC	8 cut(s)	194, 386, 454, 517, 553, 667, 1017, 1075
LweI	GCATC	3 cut(s)	20, 145, 667
MaeI	CTAG	3 cut(s)	132, 194, 557
MaeII	ACGT	2 cut(s)	600, 1184
MaeIII	GTNAC	1 cut(s)	1076
MalI	GATC	6 cut(s)	85, 229, 264, 456, 611, 1192
MboI	GATC	6 cut(s)	83, 227, 262, 454, 609, 1190
MboII	GAAGA	8 cut(s)	13, 156, 236, 425, 728, 777, 849, 947
MflI	RGATCY	1 cut(s)	83
MhlI	GDGCHC	2 cut(s)	131, 747
MluCI	AATT	5 cut(s)	36, 212, 1060, 1069, 1197
MlyI	GAGTC	2 cut(s)	1007, 1059
Mph1103I	ATGCAT	1 cut(s)	13
MseI	TTAA	4 cut(s)	594, 786, 1137, 1181
MslI	CAYNNNNRTG	2 cut(s)	750, 774
MspA1I	CMGCKG	3 cut(s)	530, 566, 1102
MspI	CCGG	3 cut(s)	68, 1164, 1176
MspR9I	CCNGG	3 cut(s)	190, 992, 1143
Mva1269I	GAATGC	2 cut(s)	663, 781
MvaI	CCWGG	3 cut(s)	190, 992, 1143
MwoI	GCNNNNNNNGC	6 cut(s)	348, 357, 371, 383, 686, 822
NdeII	GATC	6 cut(s)	83, 227, 262, 454, 609, 1190
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	2 cut(s)	980, 1174
NmeAIII	GCCGAG	1 cut(s)	225
NsiI	ATGCAT	1 cut(s)	13
PcsI	WCGNNNNNNNCGW	1 cut(s)	325
PctI	GAATGC	2 cut(s)	663, 781
PfeI	GAWTC	8 cut(s)	57, 108, 478, 620, 791, 809, 932, 1096
PflFI	GACNNNGTC	1 cut(s)	425
PflMI	CCANNNNNTGG	1 cut(s)	975
PkrI	GCNGC	8 cut(s)	209, 376, 469, 532, 568, 682, 1032, 1090
PleI	GAGTC	2 cut(s)	1007, 1058
PpsI	GAGTC	2 cut(s)	1007, 1058
Psp1406I	AACGTT	1 cut(s)	600
Psp6I	CCWGG	3 cut(s)	188, 990, 1141
PspGI	CCWGG	3 cut(s)	188, 990, 1141
PspN4I	GGNNCC	2 cut(s)	980, 1174
PsuI	RGATCY	1 cut(s)	83
PsyI	GACNNNGTC	1 cut(s)	425
PvuII	CAGCTG	2 cut(s)	530, 566
RsaI	GTAC	2 cut(s)	310, 439
RsaNI	GTAC	2 cut(s)	309, 438
RseI	CAYNNNNRTG	2 cut(s)	750, 774
SaqAI	TTAA	4 cut(s)	594, 786, 1137, 1181
SatI	GCNGC	8 cut(s)	208, 375, 468, 531, 567, 681, 1031, 1089
Sau3AI	GATC	6 cut(s)	83, 227, 262, 454, 609, 1190
SchI	GAGTC	2 cut(s)	1007, 1059
ScrFI	CCNGG	3 cut(s)	190, 992, 1143
SduI	GDGCHC	2 cut(s)	131, 747
SfaNI	GCATC	3 cut(s)	20, 145, 667
SmiMI	CAYNNNNRTG	2 cut(s)	750, 774
Sse9I	AATT	5 cut(s)	36, 212, 1060, 1069, 1197
SsiI	CCGC	3 cut(s)	588, 1100, 1128
SspMI	CTAG	3 cut(s)	132, 194, 557
StyD4I	CCNGG	3 cut(s)	188, 990, 1141
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	2 cut(s)	603, 1187
TaqI	TCGA	7 cut(s)	106, 147, 328, 763, 972, 1058, 1094
TasI	AATT	5 cut(s)	36, 212, 1060, 1069, 1197
TatI	WGTACW	1 cut(s)	437
TfiI	GAWTC	8 cut(s)	57, 108, 478, 620, 791, 809, 932, 1096
Tru1I	TTAA	4 cut(s)	594, 786, 1137, 1181
Tru9I	TTAA	4 cut(s)	594, 786, 1137, 1181
TscAI	CASTG	1 cut(s)	1125
TseI	GCWGC	8 cut(s)	207, 374, 467, 530, 566, 680, 1030, 1088
TspDTI	ATGAA	3 cut(s)	306, 849, 893
TspGWI	ACGGA	2 cut(s)	133, 662
TspRI	CASTG	1 cut(s)	1125
Tth111I	GACNNNGTC	1 cut(s)	425
Van91I	CCANNNNNTGG	1 cut(s)	975
VneI	GTGCAC	1 cut(s)	743
XagI	CCTNNNNNAGG	1 cut(s)	989
XapI	RAATTY	1 cut(s)	1060
XspI	CTAG	3 cut(s)	132, 194, 557
Zsp2I	ATGCAT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.