Rw7G017340

3-oxoacyl- acyl-carrier-protein synthase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
18068925 .. 18074684
5760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G017340.1

Sequence Viewer

Length: 1215 bp
ATGGCCAATGCATCTGGGTTCTTTACTACTCCTTCAGTTCCGAGCCTGAGGAGGAAGATTCAGCCTTCAATAGCCATTTTTGGATCTGGGTTTCTCTCCCCTGAGGGAATCTCCAGGAGGGTAGTGCTCTGCTCCAGCGCTGAGAAGCAAGCTGGAGCTACTTCCTCTTCTGAATCTAGAGCACCCAGGCTTGTCAGTAAAGGCTGCAAGTTAATCGGGTGTGGCTCGGCAGTACCCAGTCTTAAGATTTCAAATGACGAGCTTTCAAAAATAGTAGACACTAACGATGAATGGATATCTGTTCGCACTGGGATTCGTAATCGACGAGTTATTTCAGGCAAAGAAAACCTAACCTTATTAGCATCTGAGGCAGCAAAGAAAGCTCTTGAGATGGCACAGGTTGATGCTGATGATGTAGACCTAATCTTGATGTGCACCTCTACACCTGATGATCTTTTTGGCGGGGCTCCTCAGGTACAAAAAGCACTTGGCTGCAAAAAGCACCCCTTGTCCTATGATATTACAGCTGCCTGTAGTGGATTCGTATTGGGTTTAGTATCAGCTGCTTGTCACATTAGGGGAGGTGGATTCAAAAATGTTCTAGTTATTGGGGCTGATGCTCTTTCTCGGATTGTTGACTGGTCCGACAGAGGAACCTGTATTCTCTTTGGGGATGCTGCCGGGGCTGTTTTAATACAGGCCACTGACACTGAGGAGGATTTCTTACTTGGTTTTGACGTTCATAGTGATGGTGACGGAAACAGGCATGTACATCTAAATGCTCCGTTGAAAGGAAATGAAACAGATAGTGAATTGGGTTCTAATGGTTCAGTCTTAGACTTCCCTCCAAGACGCTCTTCATTTTCTTGCGTTCAAATGAATGGAAAAGAAGTCTTTCGGTTTGCATGTCGATGTGTGCCACAATCAATTGAGAATTCACTTGCGAATGCTGGTATTCCTGCATCTAGCATTGACTGGTTACTGCTCCATCAGGCAAACCAGAGGATTCTTGATGCAGTTTCTAGTCGCTTGGAAATCCCATCAGAACAGGTCATTTCAAATTTGGCGAACTATGGTAACACCAGTGCCGCTTCCATTCCTTTGGCATTGGATGAATCTGTAAGAAGTGGCAAGGTGCGACCAGGCCATACAATAGCAGCTGCAGGCTTTGGAGCAGGTCTCACTTGGGGTTCTGCTATTCTAAGATGGGGTTGA

Protein Analysis

404

Amino Acids

42.6

Weight (kDa)

6.4

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACP_syn_III PF08545 172 - 251 3.4e-28 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
ACP_syn_III_C PF08541 314 - 403 2e-35 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1166
AccI GTMKAC 2 cut(s) 276, 417
AciI CCGC 2 cut(s) 462, 1089
AclWI GGATC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 934, 1060
AcuI CTGAAG 1 cut(s) 18
AfaI GTAC 3 cut(s) 234, 477, 771
AfeI AGCGCT 1 cut(s) 139
AfiI CCNNNNNNNGG 1 cut(s) 791
AflII CTTAAG 1 cut(s) 242
AgsI TTSAA 7 cut(s) 69, 252, 267, 592, 790, 875, 1059
AjnI CCWGG 3 cut(s) 113, 185, 1141
AjuI GAANNNNNNNTTGG 2 cut(s) 841, 873
AluBI AGCT 7 cut(s) 152, 158, 262, 383, 527, 563, 1160
AluI AGCT 7 cut(s) 152, 158, 262, 383, 527, 563, 1160
Alw21I GWGCWC 3 cut(s) 129, 184, 437
Alw26I GTCTC 1 cut(s) 1184
Alw44I GTGCAC 1 cut(s) 433
AlwI GGATC 1 cut(s) 91
Aor51HI AGCGCT 1 cut(s) 139
AoxI GGCC 3 cut(s) 3, 699, 1144
ApaLI GTGCAC 1 cut(s) 433
ApeKI GCWGC 8 cut(s) 204, 371, 492, 527, 563, 677, 1157, 1160
ApoI RAATTY 2 cut(s) 934, 1060
Asp700I GAANNNNTTC 1 cut(s) 894
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 642
AsuC2I CCSGG 1 cut(s) 682
AsuHPI GGTGA 1 cut(s) 764
AvaII GGWCC 1 cut(s) 642
AxyI CCTNAGG 3 cut(s) 47, 102, 471
BaeGI GKGCMC 1 cut(s) 437
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 469
Bbv12I GWGCWC 3 cut(s) 129, 184, 437
BbvI GCAGC 8 cut(s) 191, 383, 479, 514, 550, 664, 1147, 1169
BccI CCATC 5 cut(s) 385, 743, 996, 1048, 1200
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BciT130I CCWGG 3 cut(s) 115, 187, 1143
BcnI CCSGG 1 cut(s) 682
BcoDI GTCTC 1 cut(s) 1184
BfaI CTAG 4 cut(s) 177, 602, 966, 1023
BfmI CTRYAG 2 cut(s) 532, 1161
BfoI RGCGCY 1 cut(s) 141
BfrI CTTAAG 1 cut(s) 242
BfuAI ACCTGC 1 cut(s) 1166
BisI GCNGC 9 cut(s) 205, 372, 493, 528, 564, 678, 1089, 1158, 1161
BlsI GCNGC 9 cut(s) 206, 373, 494, 529, 565, 679, 1090, 1159, 1162
Bme1390I CCNGG 4 cut(s) 115, 187, 682, 1143
Bme18I GGWCC 1 cut(s) 642
BmgT120I GGNCC 1 cut(s) 642
BmiI GGNNCC 2 cut(s) 468, 655
BmrFI CCNGG 4 cut(s) 115, 187, 682, 1143
BmrI ACTGGG 2 cut(s) 231, 318
BmsI GCATC 7 cut(s) 20, 371, 394, 607, 664, 971, 1003
BmuI ACTGGG 2 cut(s) 231, 318
BplI GAGNNNNNCTC 4 cut(s) 95, 127, 1164, 1196
BpmI CTGGAG 3 cut(s) 97, 118, 174
BpuEI CTTGAG 1 cut(s) 407
BpuMI CCSGG 1 cut(s) 682
BsaI GGTCTC 1 cut(s) 1184
BsaJI CCNNGG 2 cut(s) 185, 681
Bsc4I CCNNNNNNNGG 1 cut(s) 791
Bse1I ACTGG 5 cut(s) 237, 313, 644, 980, 1083
Bse21I CCTNAGG 3 cut(s) 47, 102, 471
BseBI CCWGG 3 cut(s) 115, 187, 1143
BseDI CCNNGG 2 cut(s) 185, 681
BseGI GGATG 2 cut(s) 679, 1117
BseLI CCNNNNNNNGG 1 cut(s) 791
BseMII CTCAG 6 cut(s) 38, 93, 132, 357, 485, 702
BseNI ACTGG 5 cut(s) 237, 313, 644, 980, 1083
BseRI GAGGAG 3 cut(s) 64, 459, 728
BseSI GKGCMC 1 cut(s) 437
BseXI GCAGC 8 cut(s) 191, 383, 479, 514, 550, 664, 1147, 1169
BshFI GGCC 3 cut(s) 5, 701, 1146
BsiHKAI GWGCWC 3 cut(s) 129, 184, 437
BsiSI CCGG 1 cut(s) 681
BslI CCNNNNNNNGG 1 cut(s) 791
BsmAI GTCTC 1 cut(s) 1184
BsmI GAATGC 1 cut(s) 952
BsnI GGCC 3 cut(s) 5, 701, 1146
Bso31I GGTCTC 1 cut(s) 1184
Bsp1286I GDGCHC 4 cut(s) 129, 184, 437, 469
Bsp1407I TGTACA 1 cut(s) 769
Bsp143I GATC 2 cut(s) 83, 451
BspACI CCGC 2 cut(s) 462, 1089
BspANI GGCC 3 cut(s) 5, 701, 1146
BspCNI CTCAG 6 cut(s) 39, 94, 133, 358, 484, 703
BspLI GGNNCC 2 cut(s) 468, 655
BspMAI CTGCAG 1 cut(s) 1165
BspMI ACCTGC 1 cut(s) 1166
BspPI GGATC 1 cut(s) 91
BspQI GCTCTTC 1 cut(s) 862
BspTI CTTAAG 1 cut(s) 242
BspTNI GGTCTC 1 cut(s) 1184
BsrGI TGTACA 1 cut(s) 769
BsrI ACTGG 5 cut(s) 237, 313, 644, 980, 1083
BssECI CCNNGG 2 cut(s) 185, 681
BssMI GATC 2 cut(s) 83, 451
Bst2UI CCWGG 3 cut(s) 115, 187, 1143
Bst6I CTCTTC 2 cut(s) 172, 862
BstAFI CTTAAG 1 cut(s) 242
BstAUI TGTACA 1 cut(s) 769
BstC8I GCNNGC 2 cut(s) 150, 1165
BstDEI CTNAG 8 cut(s) 47, 102, 141, 366, 471, 711, 835, 1202
BstF5I GGATG 2 cut(s) 679, 1117
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 2 cut(s) 86, 454
BstMAI GTCTC 1 cut(s) 1184
BstMBI GATC 2 cut(s) 83, 451
BstMWI GCNNNNNNNGC 3 cut(s) 368, 380, 683
BstNI CCWGG 3 cut(s) 115, 187, 1143
BstNSI RCATGY 2 cut(s) 770, 909
BstSCI CCNGG 4 cut(s) 113, 185, 680, 1141
BstSFI CTRYAG 2 cut(s) 532, 1161
BstSLI GKGCMC 1 cut(s) 437
BstV1I GCAGC 8 cut(s) 191, 383, 479, 514, 550, 664, 1147, 1169
BstX2I RGATCY 1 cut(s) 83
BstXI CCANNNNNNTGG 1 cut(s) 1102
BstYI RGATCY 1 cut(s) 83
Bsu36I CCTNAGG 3 cut(s) 47, 102, 471
BsuRI GGCC 3 cut(s) 5, 701, 1146
BtsCI GGATG 2 cut(s) 679, 1117
BtsIMutI CAGTG 4 cut(s) 306, 702, 708, 1090
BveI ACCTGC 1 cut(s) 1166
Cac8I GCNNGC 2 cut(s) 150, 1165
CfoI GCGC 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 642
CseI GACGC 1 cut(s) 861
Csp6I GTAC 3 cut(s) 233, 476, 770
CviAII CATG 2 cut(s) 767, 906
CviQI GTAC 3 cut(s) 233, 476, 770
DdeI CTNAG 8 cut(s) 47, 102, 141, 366, 471, 711, 835, 1202
DpnI GATC 2 cut(s) 85, 453
DpnII GATC 2 cut(s) 83, 451
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 172, 862
EarI CTCTTC 2 cut(s) 172, 862
Eco24I GRGCYC 1 cut(s) 469
Eco31I GGTCTC 1 cut(s) 1184
Eco32I GATATC 1 cut(s) 297
Eco47I GGWCC 1 cut(s) 642
Eco47III AGCGCT 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 18
Eco81I CCTNAGG 3 cut(s) 47, 102, 471
EcoRI GAATTC 1 cut(s) 934
EcoRII CCWGG 3 cut(s) 113, 185, 1141
EcoRV GATATC 1 cut(s) 297
EcoT22I ATGCAT 1 cut(s) 13
EcoT38I GRGCYC 1 cut(s) 469
FaeI CATG 2 cut(s) 770, 909
FaiI YATR 6 cut(s) 516, 744, 768, 907, 1074, 1149
FalI AAGNNNNNCTT 4 cut(s) 491, 523, 841, 873
FatI CATG 2 cut(s) 766, 905
FauI CCCGC 1 cut(s) 455
FblI GTMKAC 2 cut(s) 276, 417
Fnu4HI GCNGC 9 cut(s) 205, 372, 493, 528, 564, 678, 1089, 1158, 1161
FokI GGATG 2 cut(s) 686, 1124
FriOI GRGCYC 1 cut(s) 469
Fsp4HI GCNGC 9 cut(s) 205, 372, 493, 528, 564, 678, 1089, 1158, 1161
FspBI CTAG 4 cut(s) 177, 602, 966, 1023
GlaI GCGC 1 cut(s) 139
GluI GCNGC 9 cut(s) 205, 372, 493, 528, 564, 678, 1089, 1158, 1161
GsuI CTGGAG 3 cut(s) 97, 118, 174
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 3 cut(s) 5, 701, 1146
HapII CCGG 1 cut(s) 681
HgaI GACGC 1 cut(s) 861
HhaI GCGC 1 cut(s) 140
Hin1II CATG 2 cut(s) 770, 909
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HincII GTYRAC 1 cut(s) 637
HindII GTYRAC 1 cut(s) 637
HinfI GANTC 8 cut(s) 58, 108, 173, 313, 540, 588, 1006, 1115
HpaII CCGG 1 cut(s) 681
HphI GGTGA 1 cut(s) 764
Hpy166II GTNNAC 4 cut(s) 277, 418, 435, 637
Hpy188I TCNGA 6 cut(s) 42, 172, 367, 630, 646, 1045
Hpy188III TCNNGA 4 cut(s) 177, 386, 427, 1010
Hpy8I GTNNAC 4 cut(s) 277, 418, 435, 637
Hpy99I CGWCG 1 cut(s) 327
HpyAV CCTTC 2 cut(s) 42, 75
HpyCH4IV ACGT 1 cut(s) 738
HpyCH4V TGCA 8 cut(s) 11, 207, 435, 495, 905, 962, 1016, 1163
HpyF10VI GCNNNNNNNGC 3 cut(s) 368, 380, 683
HpyF3I CTNAG 8 cut(s) 47, 102, 141, 366, 471, 711, 835, 1202
HpySE526I ACGT 1 cut(s) 738
Hsp92II CATG 2 cut(s) 770, 909
HspAI GCGC 1 cut(s) 138
Kzo9I GATC 2 cut(s) 83, 451
LguI GCTCTTC 1 cut(s) 862
LmnI GCTCC 6 cut(s) 137, 155, 472, 787, 990, 1172
Lsp1109I GCAGC 8 cut(s) 191, 383, 479, 514, 550, 664, 1147, 1169
LweI GCATC 7 cut(s) 20, 371, 394, 607, 664, 971, 1003
MaeI CTAG 4 cut(s) 177, 602, 966, 1023
MaeII ACGT 1 cut(s) 738
MaeIII GTNAC 4 cut(s) 569, 752, 978, 1076
MalI GATC 2 cut(s) 85, 453
MboI GATC 2 cut(s) 83, 451
MboII GAAGA 3 cut(s) 67, 159, 849
MfeI CAATTG 1 cut(s) 927
MflI RGATCY 1 cut(s) 83
MhlI GDGCHC 4 cut(s) 129, 184, 437, 469
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 812, 927, 934, 1060
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 669
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 13
MroXI GAANNNNTTC 1 cut(s) 894
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 212, 243, 692
MslI CAYNNNNRTG 3 cut(s) 747, 777, 910
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 3 cut(s) 527, 563, 1160
MspCI CTTAAG 1 cut(s) 242
MspI CCGG 1 cut(s) 681
MspR9I CCNGG 4 cut(s) 115, 187, 682, 1143
MunI CAATTG 1 cut(s) 927
Mva1269I GAATGC 1 cut(s) 952
MvaI CCWGG 3 cut(s) 115, 187, 1143
MwoI GCNNNNNNNGC 3 cut(s) 368, 380, 683
NciI CCSGG 1 cut(s) 682
NdeII GATC 2 cut(s) 83, 451
NlaIII CATG 2 cut(s) 770, 909
NlaIV GGNNCC 2 cut(s) 468, 655
NmeAIII GCCGAG 1 cut(s) 206
NmuCI GTSAC 2 cut(s) 569, 752
NsiI ATGCAT 1 cut(s) 13
NspI RCATGY 2 cut(s) 770, 909
PciSI GCTCTTC 1 cut(s) 862
PcsI WCGNNNNNNNCGW 1 cut(s) 322
PctI GAATGC 1 cut(s) 952
PdmI GAANNNNTTC 1 cut(s) 894
PfeI GAWTC 8 cut(s) 58, 108, 173, 313, 540, 588, 1006, 1115
PfoI TCCNGGA 1 cut(s) 113
PkrI GCNGC 9 cut(s) 206, 373, 494, 529, 565, 679, 1090, 1159, 1162
Psp6I CCWGG 3 cut(s) 113, 185, 1141
PspGI CCWGG 3 cut(s) 113, 185, 1141
PspN4I GGNNCC 2 cut(s) 468, 655
PspPI GGNCC 1 cut(s) 642
PstI CTGCAG 1 cut(s) 1165
PsuI RGATCY 1 cut(s) 83
PvuII CAGCTG 3 cut(s) 527, 563, 1160
RsaI GTAC 3 cut(s) 234, 477, 771
RsaNI GTAC 3 cut(s) 233, 476, 770
RseI CAYNNNNRTG 3 cut(s) 747, 777, 910
SapI GCTCTTC 1 cut(s) 862
SaqAI TTAA 3 cut(s) 212, 243, 692
SatI GCNGC 9 cut(s) 205, 372, 493, 528, 564, 678, 1089, 1158, 1161
Sau3AI GATC 2 cut(s) 83, 451
Sau96I GGNCC 1 cut(s) 642
ScrFI CCNGG 4 cut(s) 115, 187, 682, 1143
SduI GDGCHC 4 cut(s) 129, 184, 437, 469
SfaNI GCATC 7 cut(s) 20, 371, 394, 607, 664, 971, 1003
SfcI CTRYAG 2 cut(s) 532, 1161
SinI GGWCC 1 cut(s) 642
SmiMI CAYNNNNRTG 3 cut(s) 747, 777, 910
SmlI CTYRAG 2 cut(s) 242, 386
SmoI CTYRAG 2 cut(s) 242, 386
Sse9I AATT 4 cut(s) 812, 927, 934, 1060
SsiI CCGC 2 cut(s) 462, 1089
SspMI CTAG 4 cut(s) 177, 602, 966, 1023
StyD4I CCNGG 4 cut(s) 113, 185, 680, 1141
TaiI ACGT 1 cut(s) 741
TaqI TCGA 2 cut(s) 322, 910
TasI AATT 4 cut(s) 812, 927, 934, 1060
TatI WGTACW 1 cut(s) 769
TauI GCSGC 1 cut(s) 1091
TfiI GAWTC 8 cut(s) 58, 108, 173, 313, 540, 588, 1006, 1115
Tru1I TTAA 3 cut(s) 212, 243, 692
Tru9I TTAA 3 cut(s) 212, 243, 692
TscAI CASTG 4 cut(s) 313, 709, 715, 1090
TseFI GTSAC 2 cut(s) 569, 752
TseI GCWGC 8 cut(s) 204, 371, 492, 527, 563, 677, 1157, 1160
Tsp45I GTSAC 2 cut(s) 569, 752
TspDTI ATGAA 6 cut(s) 303, 731, 813, 849, 893, 1128
TspGWI ACGGA 2 cut(s) 771, 774
TspRI CASTG 4 cut(s) 313, 709, 715, 1090
Vha464I CTTAAG 1 cut(s) 242
VneI GTGCAC 1 cut(s) 433
VpaK11BI GGWCC 1 cut(s) 642
XapI RAATTY 2 cut(s) 934, 1060
XbaI TCTAGA 1 cut(s) 176
XceI RCATGY 2 cut(s) 770, 909
XmiI GTMKAC 2 cut(s) 276, 417
XmnI GAANNNNTTC 1 cut(s) 894
XspI CTAG 4 cut(s) 177, 602, 966, 1023
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.