Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004673

Physical Location & Seq

Genomic Coordinates Forward (+)

8913646 .. 8920463

Gene Structure 6818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G075100.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGCCACCAATGCATCTGGGTTGTTTACTACTCCTACAGTTCCAAGCCTGAGGGGGAAGATTAAGCCTTCAATACGCATTTTTGGATCTGGGTTTCGCTCCCCTGATGGAATCTCCAAGAGGGTATTCTGCTCCAGTACCTTTGAAGGCGCAGAGAAGCACGTTGGAGCTTCCCCTTCTGAATCTAGAGCACCCAGGCTTGTTAGTAAAGGCTGCAAGTTAATTGGATGTGGCTCGGCGGTACCCTCCCTTAAGATTTCAAATGATGATCTTGCAAAAGTAGTAGACACTAACGATGAATGGATATCTGTTCGCACTGGCATTCGTAATCGACGAATTCTTTCAGGCAAAGAGAGCCTGACAGCGTTAGCAGTAGAGGCAGCACTTAAAGCTCTTGAGATGGCTGAAGTTGATGTTGATGATGTGGACCTAATCTTGATGTGCACATCTTCACCTGATGATCTGTTTGGCAGTGCTCCTCAGGTTCAGAAAGCACTTGGCTGCAAAAGGAACCCTTTGGCTTATGATATTACAGCTGCCTGTAGCGGATTTGTTATGGGTCTAGTATCAGCTGCTTGCCACATTAGGGGAGGTGGATTCAAAAATGTTCTAGTTATTGGAGCTGATGCTCTTTCTCGGTTTGTTGACTGGACCGATAGAGGAACGTGTATTCTTTTTGGGGATGCTGCTGGTGCTGTATTAGTACAGGCCTGCGATAGTGAGGATGATTCTTTGCTTGCTTTTGATTTGCATAGTGATGGTGACGGAAACAGACATCTAAATGCTGCCTTCAAAGAAAGTGAAACAGATGAGTTGGGTTCTAATGGTTCAGTCTTAGGTTTCCCTCCAAGGCGCGCCTCATTTTCCTGCCTTCAAATGAATGGCAAAGAGGTCTTTCGCTTTGCTGTGCGCGTTGTGCCACAGTCAATTGAGGCTGCCCTTGCCAAGGCTGGTCTCCCGACATCTAGCATTGATTGGTTACTGCTCCATCAGGCAAACCAGAGGATCCTTGATGGAGTTTCTTCTCGCATGCAAATCCCATCAGAACAGGTGATTTCAAATTTGGCAAACTATGGTAACACAAGCGCTGCTTCGATTCCTTTGGCATTGGATGAAGCTGTGAGAAGCGGGAAGGTGAAACCAGGCCATACAATTGCAGCTGCCGGCTTTGGAGCAGGTCTGACTTGGGGTTCTACTGTTTTCAGATGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko01100 ko01212 map00061 map01100 map01212

Pfam Domains

Protein Families

ACP_syn_III ACP_syn_III_C

Protein Analysis

405

Amino Acids

42.56

Weight (kDa)

6.6

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62640 AT1G62640
fragaria_vesca	FvH4_5g00250
malus_domestica	MD04G1085000.v1.1 MD06G1063300.v1.1 MD06G1063400.v1.1 MD08G1135900.v1.1 MD09G1022600.v1.1 MD12G1033000.v1.1
prunus_persica	Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1
pyrus_communis	pycom04g07590 pycom06g06010 pycom08g11500
rosa_chinensis	RchiOBHm_Chr7g0202391
rosa_laevigata	RLG00000003604
rosa_multiflora	Rmu_co8440841.1_g000001 Rmu_sc0000266.1_g000012
rosa_roxburghii	Rroxscaffold_3G00254630
rosa_rugosa	Rorug07G0070200 Rorug07G0070300
rosa_samantha	Rh7AG197800 Rh7BG198800 Rh7CG208800 Rh7DG204500
rosa_wichuraiana	Rw7G017340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1166
Acc65I	GGTACC	1 cut(s)	241
AccB1I	GGYRCC	1 cut(s)	241
AccI	GTMKAC	1 cut(s)	285
AccII	CGCG	2 cut(s)	855, 912
AciI	CCGC	3 cut(s)	239, 546, 1128
AclWI	GGATC	3 cut(s)	94, 1000, 1013
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	336, 1060
AcuI	CTGAAG	1 cut(s)	426
AfaI	GTAC	3 cut(s)	139, 243, 705
AfeI	AGCGCT	1 cut(s)	1087
AfiI	CCNNNNNNNGG	2 cut(s)	586, 946
AflII	CTTAAG	1 cut(s)	251
AflIII	ACRYGT	1 cut(s)	665
AgsI	TTSAA	7 cut(s)	72, 146, 261, 601, 793, 875, 1059
AjnI	CCWGG	2 cut(s)	194, 1141
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	7 cut(s)	170, 392, 536, 572, 623, 1118, 1160
AluI	AGCT	7 cut(s)	170, 392, 536, 572, 623, 1118, 1160
Alw21I	GWGCWC	3 cut(s)	193, 446, 478
Alw26I	GTCTC	1 cut(s)	959
Alw44I	GTGCAC	1 cut(s)	442
AlwI	GGATC	3 cut(s)	94, 1000, 1013
Aor51HI	AGCGCT	1 cut(s)	1087
AoxI	GGCC	3 cut(s)	3, 708, 1144
ApaLI	GTGCAC	1 cut(s)	442
ApoI	RAATTY	2 cut(s)	336, 1060
AscI	GGCGCGCC	1 cut(s)	853
Asp700I	GAANNNNTTC	1 cut(s)	340
Asp718I	GGTACC	1 cut(s)	241
AspLEI	GCGC	5 cut(s)	152, 855, 857, 912, 1088
AspS9I	GGNCC	2 cut(s)	427, 651
AsuHPI	GGTGA	4 cut(s)	444, 773, 1063, 1147
AvaII	GGWCC	2 cut(s)	427, 651
AxyI	CCTNAGG	2 cut(s)	50, 480
BaeGI	GKGCMC	1 cut(s)	446
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	1005
BanI	GGYRCC	1 cut(s)	241
Bbv12I	GWGCWC	3 cut(s)	193, 446, 478
BccI	CCATC	7 cut(s)	101, 394, 752, 996, 1007, 1048, 1200
BciT130I	CCWGG	2 cut(s)	196, 1143
BcoDI	GTCTC	1 cut(s)	959
BfaI	CTAG	4 cut(s)	186, 563, 611, 966
BfmI	CTRYAG	2 cut(s)	36, 541
BfoI	RGCGCY	1 cut(s)	1089
BfrI	CTTAAG	1 cut(s)	251
BfuAI	ACCTGC	1 cut(s)	1166
Bme1390I	CCNGG	2 cut(s)	196, 1143
Bme18I	GGWCC	2 cut(s)	427, 651
BmgT120I	GGNCC	2 cut(s)	427, 651
BmiI	GGNNCC	3 cut(s)	243, 512, 1007
BmrFI	CCNGG	2 cut(s)	196, 1143
BmsI	GCATC	3 cut(s)	23, 616, 673
BpmI	CTGGAG	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	416
BsaI	GGTCTC	1 cut(s)	959
BsaJI	CCNNGG	3 cut(s)	194, 848, 945
Bsc4I	CCNNNNNNNGG	2 cut(s)	586, 946
Bse118I	RCCGGY	1 cut(s)	1163
Bse1I	ACTGG	3 cut(s)	135, 322, 653
Bse21I	CCTNAGG	2 cut(s)	50, 480
BseBI	CCWGG	2 cut(s)	196, 1143
BseDI	CCNNGG	3 cut(s)	194, 848, 945
BseGI	GGATG	4 cut(s)	233, 688, 730, 1117
BseLI	CCNNNNNNNGG	2 cut(s)	586, 946
BseMII	CTCAG	2 cut(s)	41, 494
BseNI	ACTGG	3 cut(s)	135, 322, 653
BsePI	GCGCGC	1 cut(s)	853
BseRI	GAGGAG	1 cut(s)	468
BseSI	GKGCMC	1 cut(s)	446
Bsh1236I	CGCG	2 cut(s)	855, 912
BshFI	GGCC	3 cut(s)	5, 710, 1146
BshNI	GGYRCC	1 cut(s)	241
BsiHKAI	GWGCWC	3 cut(s)	193, 446, 478
BsiSI	CCGG	1 cut(s)	1164
BslI	CCNNNNNNNGG	2 cut(s)	586, 946
BsmAI	GTCTC	1 cut(s)	959
BsmI	GAATGC	1 cut(s)	321
BsnI	GGCC	3 cut(s)	5, 710, 1146
Bso31I	GGTCTC	1 cut(s)	959
Bsp1286I	GDGCHC	3 cut(s)	193, 446, 478
Bsp143I	GATC	4 cut(s)	86, 268, 460, 1005
BspACI	CCGC	3 cut(s)	239, 546, 1128
BspANI	GGCC	3 cut(s)	5, 710, 1146
BspCNI	CTCAG	2 cut(s)	42, 493
BspFNI	CGCG	2 cut(s)	855, 912
BspLI	GGNNCC	3 cut(s)	243, 512, 1007
BspMI	ACCTGC	1 cut(s)	1166
BspPI	GGATC	3 cut(s)	94, 1000, 1013
BspT107I	GGYRCC	1 cut(s)	241
BspTI	CTTAAG	1 cut(s)	251
BspTNI	GGTCTC	1 cut(s)	959
BsrFI	RCCGGY	1 cut(s)	1163
BsrI	ACTGG	3 cut(s)	135, 322, 653
BssAI	RCCGGY	1 cut(s)	1163
BssECI	CCNNGG	3 cut(s)	194, 848, 945
BssHII	GCGCGC	1 cut(s)	853
BssMI	GATC	4 cut(s)	86, 268, 460, 1005
BssT1I	CCWWGG	2 cut(s)	848, 945
Bst2UI	CCWGG	2 cut(s)	196, 1143
Bst4CI	ACNGT	3 cut(s)	40, 924, 1198
BstAFI	CTTAAG	1 cut(s)	251
BstC8I	GCNNGC	6 cut(s)	577, 712, 738, 855, 1031, 1165
BstDEI	CTNAG	3 cut(s)	50, 480, 835
BstENI	CCTNNNNNAGG	1 cut(s)	944
BstF5I	GGATG	4 cut(s)	233, 688, 730, 1117
BstFNI	CGCG	2 cut(s)	855, 912
BstH2I	RGCGCY	1 cut(s)	1089
BstHHI	GCGC	5 cut(s)	152, 855, 857, 912, 1088
BstKTI	GATC	4 cut(s)	89, 271, 463, 1008
BstMAI	GTCTC	1 cut(s)	959
BstMBI	GATC	4 cut(s)	86, 268, 460, 1005
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 354, 377, 389, 692, 916, 941
BstNI	CCWGG	2 cut(s)	196, 1143
BstNSI	RCATGY	1 cut(s)	1033
BstSCI	CCNGG	2 cut(s)	194, 1141
BstSFI	CTRYAG	2 cut(s)	36, 541
BstSLI	GKGCMC	1 cut(s)	446
BstUI	CGCG	2 cut(s)	855, 912
BstX2I	RGATCY	2 cut(s)	86, 1005
BstYI	RGATCY	2 cut(s)	86, 1005
Bsu36I	CCTNAGG	2 cut(s)	50, 480
BsuRI	GGCC	3 cut(s)	5, 710, 1146
BtsCI	GGATG	4 cut(s)	233, 688, 730, 1117
BtsI	GCAGTG	1 cut(s)	478
BtsIMutI	CAGTG	2 cut(s)	315, 478
BveI	ACCTGC	1 cut(s)	1166
Cac8I	GCNNGC	6 cut(s)	577, 712, 738, 855, 1031, 1165
CfoI	GCGC	5 cut(s)	152, 855, 857, 912, 1088
Cfr10I	RCCGGY	1 cut(s)	1163
Cfr13I	GGNCC	2 cut(s)	427, 651
Csp6I	GTAC	3 cut(s)	138, 242, 704
CviAII	CATG	1 cut(s)	1030
CviQI	GTAC	3 cut(s)	138, 242, 704
DdeI	CTNAG	3 cut(s)	50, 480, 835
DpnI	GATC	4 cut(s)	88, 270, 462, 1007
DpnII	GATC	4 cut(s)	86, 268, 460, 1005
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	848, 945
Eco147I	AGGCCT	1 cut(s)	710
Eco31I	GGTCTC	1 cut(s)	959
Eco32I	GATATC	1 cut(s)	306
Eco47I	GGWCC	2 cut(s)	427, 651
Eco47III	AGCGCT	1 cut(s)	1087
Eco57I	CTGAAG	1 cut(s)	426
Eco81I	CCTNAGG	2 cut(s)	50, 480
EcoNI	CCTNNNNNAGG	1 cut(s)	944
EcoRI	GAATTC	1 cut(s)	336
EcoRII	CCWGG	2 cut(s)	194, 1141
EcoRV	GATATC	1 cut(s)	306
EcoT14I	CCWWGG	2 cut(s)	848, 945
EcoT22I	ATGCAT	1 cut(s)	16
ErhI	CCWWGG	2 cut(s)	848, 945
FaeI	CATG	1 cut(s)	1033
FaiI	YATR	6 cut(s)	525, 557, 753, 1031, 1074, 1149
FalI	AAGNNNNNCTT	4 cut(s)	499, 531, 1075, 1107
FatI	CATG	1 cut(s)	1029
FauI	CCCGC	1 cut(s)	1121
FblI	GTMKAC	1 cut(s)	285
FokI	GGATG	4 cut(s)	240, 695, 737, 1124
FspBI	CTAG	4 cut(s)	186, 563, 611, 966
GlaI	GCGC	5 cut(s)	151, 854, 856, 911, 1087
GsuI	CTGGAG	1 cut(s)	118
HaeII	RGCGCY	1 cut(s)	1089
HaeIII	GGCC	3 cut(s)	5, 710, 1146
HapII	CCGG	1 cut(s)	1164
HhaI	GCGC	5 cut(s)	152, 855, 857, 912, 1088
Hin1II	CATG	1 cut(s)	1033
Hin6I	GCGC	5 cut(s)	150, 853, 855, 910, 1086
HinP1I	GCGC	5 cut(s)	150, 853, 855, 910, 1086
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HinfI	GANTC	5 cut(s)	111, 182, 597, 728, 1096
HpaII	CCGG	1 cut(s)	1164
HphI	GGTGA	4 cut(s)	444, 773, 1063, 1147
Hpy166II	GTNNAC	5 cut(s)	27, 286, 427, 444, 646
Hpy188I	TCNGA	5 cut(s)	181, 489, 1045, 1182, 1205
Hpy188III	TCNNGA	4 cut(s)	186, 395, 436, 958
Hpy8I	GTNNAC	5 cut(s)	27, 286, 427, 444, 646
Hpy99I	CGWCG	1 cut(s)	336
HpyAV	CCTTC	6 cut(s)	78, 140, 186, 799, 881, 1126
HpyCH4III	ACNGT	3 cut(s)	40, 924, 1198
HpyCH4IV	ACGT	2 cut(s)	162, 665
HpyCH4V	TGCA	8 cut(s)	14, 216, 275, 444, 504, 751, 1033, 1157
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 354, 377, 389, 692, 916, 941
HpyF3I	CTNAG	3 cut(s)	50, 480, 835
HpySE526I	ACGT	2 cut(s)	162, 665
Hsp92II	CATG	1 cut(s)	1033
HspAI	GCGC	5 cut(s)	150, 853, 855, 910, 1086
KpnI	GGTACC	1 cut(s)	245
KroI	GCCGGC	1 cut(s)	1163
KroNI	GCCGGC	1 cut(s)	1165
Kzo9I	GATC	4 cut(s)	86, 268, 460, 1005
LmnI	GCTCC	7 cut(s)	104, 137, 167, 481, 620, 990, 1172
LweI	GCATC	3 cut(s)	23, 616, 673
MaeI	CTAG	4 cut(s)	186, 563, 611, 966
MaeII	ACGT	2 cut(s)	162, 665
MaeIII	GTNAC	3 cut(s)	761, 978, 1076
MalI	GATC	4 cut(s)	88, 270, 462, 1007
MboI	GATC	4 cut(s)	86, 268, 460, 1005
MboII	GAAGA	3 cut(s)	70, 441, 1014
MfeI	CAATTG	2 cut(s)	927, 1152
MflI	RGATCY	2 cut(s)	86, 1005
MhlI	GDGCHC	3 cut(s)	193, 446, 478
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	222, 336, 927, 1060, 1152
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	145
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	16
MroNI	GCCGGC	1 cut(s)	1163
MroXI	GAANNNNTTC	1 cut(s)	340
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	63, 221, 252, 387
MslI	CAYNNNNRTG	2 cut(s)	756, 780
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	536, 572, 1160
MspCI	CTTAAG	1 cut(s)	251
MspI	CCGG	1 cut(s)	1164
MspR9I	CCNGG	2 cut(s)	196, 1143
MunI	CAATTG	2 cut(s)	927, 1152
Mva1269I	GAATGC	1 cut(s)	321
MvaI	CCWGG	2 cut(s)	196, 1143
MvnI	CGCG	2 cut(s)	855, 912
MwoI	GCNNNNNNNGC	7 cut(s)	11, 354, 377, 389, 692, 916, 941
NaeI	GCCGGC	1 cut(s)	1165
NdeII	GATC	4 cut(s)	86, 268, 460, 1005
NgoMIV	GCCGGC	1 cut(s)	1163
NlaIII	CATG	1 cut(s)	1033
NlaIV	GGNNCC	3 cut(s)	243, 512, 1007
NmeAIII	GCCGAG	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	761
NsiI	ATGCAT	1 cut(s)	16
NspI	RCATGY	1 cut(s)	1033
PaeI	GCATGC	1 cut(s)	1033
PalAI	GGCGCGCC	1 cut(s)	853
PauI	GCGCGC	1 cut(s)	853
PceI	AGGCCT	1 cut(s)	710
PcsI	WCGNNNNNNNCGW	1 cut(s)	331
PctI	GAATGC	1 cut(s)	321
PdiI	GCCGGC	1 cut(s)	1165
PdmI	GAANNNNTTC	1 cut(s)	340
PfeI	GAWTC	5 cut(s)	111, 182, 597, 728, 1096
Psp6I	CCWGG	2 cut(s)	194, 1141
PspGI	CCWGG	2 cut(s)	194, 1141
PspN4I	GGNNCC	3 cut(s)	243, 512, 1007
PspPI	GGNCC	2 cut(s)	427, 651
PsuI	RGATCY	2 cut(s)	86, 1005
PteI	GCGCGC	1 cut(s)	853
PvuII	CAGCTG	3 cut(s)	536, 572, 1160
RsaI	GTAC	3 cut(s)	139, 243, 705
RsaNI	GTAC	3 cut(s)	138, 242, 704
RseI	CAYNNNNRTG	2 cut(s)	756, 780
SaqAI	TTAA	4 cut(s)	63, 221, 252, 387
Sau3AI	GATC	4 cut(s)	86, 268, 460, 1005
Sau96I	GGNCC	2 cut(s)	427, 651
ScrFI	CCNGG	2 cut(s)	196, 1143
SduI	GDGCHC	3 cut(s)	193, 446, 478
SfaNI	GCATC	3 cut(s)	23, 616, 673
SfcI	CTRYAG	2 cut(s)	36, 541
SgsI	GGCGCGCC	1 cut(s)	853
SinI	GGWCC	2 cut(s)	427, 651
SmiMI	CAYNNNNRTG	2 cut(s)	756, 780
SmlI	CTYRAG	2 cut(s)	251, 395
SmoI	CTYRAG	2 cut(s)	251, 395
SphI	GCATGC	1 cut(s)	1033
Sse9I	AATT	5 cut(s)	222, 336, 927, 1060, 1152
SseBI	AGGCCT	1 cut(s)	710
SsiI	CCGC	3 cut(s)	239, 546, 1128
SspMI	CTAG	4 cut(s)	186, 563, 611, 966
StuI	AGGCCT	1 cut(s)	710
StyD4I	CCNGG	2 cut(s)	194, 1141
StyI	CCWWGG	2 cut(s)	848, 945
TaaI	ACNGT	3 cut(s)	40, 924, 1198
TaiI	ACGT	2 cut(s)	165, 668
TaqI	TCGA	2 cut(s)	331, 1094
TaqII	GACCGA	1 cut(s)	668
TasI	AATT	5 cut(s)	222, 336, 927, 1060, 1152
TatI	WGTACW	1 cut(s)	703
TfiI	GAWTC	5 cut(s)	111, 182, 597, 728, 1096
Tru1I	TTAA	4 cut(s)	63, 221, 252, 387
Tru9I	TTAA	4 cut(s)	63, 221, 252, 387
TscAI	CASTG	2 cut(s)	322, 478
TseFI	GTSAC	1 cut(s)	761
Tsp45I	GTSAC	1 cut(s)	761
TspDTI	ATGAA	3 cut(s)	312, 893, 1128
TspGWI	ACGGA	1 cut(s)	780
TspRI	CASTG	2 cut(s)	322, 478
Vha464I	CTTAAG	1 cut(s)	251
VneI	GTGCAC	1 cut(s)	442
VpaK11BI	GGWCC	2 cut(s)	427, 651
XagI	CCTNNNNNAGG	1 cut(s)	944
XapI	RAATTY	2 cut(s)	336, 1060
XbaI	TCTAGA	1 cut(s)	185
XceI	RCATGY	1 cut(s)	1033
XmiI	GTMKAC	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	340
XspI	CTAG	4 cut(s)	186, 563, 611, 966
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.