Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004673

Physical Location & Seq

Genomic Coordinates Forward (+)

5351256 .. 5356209

Gene Structure 4954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0070200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGAAGAACAAGCAGCAACAAAACCCACCACCCTGTTTTCTCAAACACTTCGTGAAGGCTCAAATGCAAATCAACAAGATCATCTCTATTTTCCTCATCTTTGTCTCTGGCCTTGCCCTTGGAATCACCCTAAGCTTCTACATCAAAGACACCCCTCTTCAAATCTACACCGCATTAGCGCAAGCGAAAACCAATTTCGATTCCACCATATACAAATTAGTCCCTATAGATTCTCCCCCACCACCACCACCACCTTCTCCTGTTAAAAATGAAACCAATATCACCACCAATCCCCTCTCTTCACCGCCGGCTTCTCCACCTCCGCCAGTCGAGTTGAAAAATTACGTAAAGGTGCCGAGTGCCATGCATGGTATGGAGGATTCTGAGTTATTGTGGAGAGCTTCGATGGTGCCAAAAAGAAGTGGGGCATTGCCATTCAAGAACACCAAGCCAAAAGTGGCCTTCATGTTTTTGACCAGAGGGGATTTGGCTTTGGCTCCTTTATGGGAACGTTTCTTTAAAGGAAATGAAGGGCTTTACTCTATCTACGTCCATGCCAGTCCAACTTCCGGCGAGACAATGCCGGAAAATTCTGTGTTTCACGGCAGAAGAGTCCCGAGTAAGAATGTGACGTGGGGTGAGCCAAACATGGTACAAGCAGAGCGCCGCCTATTAGCCAATGCACTGCTGGACTTGTCCAACCAACGTTTCATTCTGCTCTCGGAGTCGTGCATACCACTATTCAACTTCAAAACGGTCTATGATTACGTTATGGACTCAACCAAAACATTTGTGGAGGCCTACGACTTGCCCGGTCCAGTGGGCCGAGACCGATACAGGAAACAAATGAGCCCAACAATCAAGCTTGAGCAATGGCGGAAGGGGTCGCAGTGGTTCGAGGTGGACCGCCAGTTGGCACTGGAGGTGGTTTCGGACAGAAGGTATTTTCCGCTGTTTGAGAATTACTGCGTCCCCTCGTGCTACTCGGATGAGCACTACTTGCCTACTTACATGAGCATCAAATTTTGGAAGAAAAACTCGAACCGGACTTTGCATTGGGTTGACTGGTCGAGAGGGGGGCCACATCCGTCAAGGTATCAGAGGACGGATGTGACTCATGAGTTCTTGAACAAGATGAGATTTGGAACAACATGTGAGTACAATGGGAAGAACACTAACATATGTCATTTGTTTGCAAGGAAGTTCATGCCTAACACTTTGGATAGGCTTTTGAGGTTTGCTCCCAAGCTCATGCAATTCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko01100 ko01212 map00061 map01100 map01212

Pfam Domains

Protein Families

ACP_syn_III ACP_syn_III_C

Protein Analysis

421

Amino Acids

48.55

Weight (kDa)

9.51

Isoelectric Point (pI)

50.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	153 - 380	4.3e-83	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62640 AT1G62640
fragaria_vesca	FvH4_5g00250
malus_domestica	MD04G1085000.v1.1 MD06G1063300.v1.1 MD06G1063400.v1.1 MD08G1135900.v1.1 MD09G1022600.v1.1 MD12G1033000.v1.1
prunus_persica	Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1
pyrus_communis	pycom04g07590 pycom06g06010 pycom08g11500
rosa_chinensis	RchiOBHm_Chr7g0202391
rosa_laevigata	RLG00000003604
rosa_multiflora	Rmu_co8440841.1_g000001 Rmu_sc0000266.1_g000012
rosa_roxburghii	Rroxscaffold_3G00254630
rosa_rugosa	Rorug07G0070200 Rorug07G0070300
rosa_samantha	Rh7AG197800 Rh7BG198800 Rh7CG208800 Rh7DG204500
rosa_wichuraiana	Rw7G017340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	352, 409
AciI	CCGC	7 cut(s)	171, 305, 323, 667, 877, 907, 950
AclI	AACGTT	2 cut(s)	511, 706
AcsI	RAATTY	2 cut(s)	589, 1022
AdeI	CACNNNGTG	1 cut(s)	52
AfaI	GTAC	2 cut(s)	654, 1160
AfiI	CCNNNNNNNGG	2 cut(s)	569, 913
AflIII	ACRYGT	1 cut(s)	1151
AgsI	TTSAA	6 cut(s)	161, 337, 439, 745, 751, 1129
AjiI	CACGTC	1 cut(s)	633
AjuI	GAANNNNNNNTTGG	4 cut(s)	692, 696, 724, 728
AluBI	AGCT	4 cut(s)	135, 401, 865, 1249
AluI	AGCT	4 cut(s)	135, 401, 865, 1249
Alw21I	GWGCWC	1 cut(s)	996
Alw26I	GTCTC	3 cut(s)	109, 569, 822
Ama87I	CYCGRG	1 cut(s)	616
AoxI	GGCC	5 cut(s)	109, 459, 798, 823, 1079
ApeKI	GCWGC	1 cut(s)	13
ApoI	RAATTY	2 cut(s)	589, 1022
AspLEI	GCGC	2 cut(s)	181, 666
AspS9I	GGNCC	4 cut(s)	815, 823, 904, 1079
AsuC2I	CCSGG	1 cut(s)	813
AsuHPI	GGTGA	4 cut(s)	118, 274, 294, 650
AvaI	CYCGRG	1 cut(s)	616
AvaII	GGWCC	2 cut(s)	815, 904
BanI	GGYRCC	2 cut(s)	352, 409
BanII	GRGCYC	1 cut(s)	854
BauI	CACGAG	1 cut(s)	976
Bbv12I	GWGCWC	1 cut(s)	996
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	1 cut(s)	400
BceAI	ACGGC	1 cut(s)	619
BcgI	CGANNNNNNTGC	2 cut(s)	346, 380
BcnI	CCSGG	1 cut(s)	813
BcoDI	GTCTC	3 cut(s)	109, 569, 822
BfmI	CTRYAG	1 cut(s)	225
BfoI	RGCGCY	1 cut(s)	667
BisI	GCNGC	2 cut(s)	14, 667
BlsI	GCNGC	2 cut(s)	15, 668
Bme1390I	CCNGG	1 cut(s)	813
Bme18I	GGWCC	2 cut(s)	815, 904
BmeT110I	CYCGRG	1 cut(s)	616
BmgBI	CACGTC	1 cut(s)	633
BmgT120I	GGNCC	4 cut(s)	815, 823, 904, 1079
BmiI	GGNNCC	4 cut(s)	354, 411, 498, 1080
BmrFI	CCNGG	1 cut(s)	813
BmsI	GCATC	1 cut(s)	1026
BplI	GAGNNNNNCTC	2 cut(s)	1225, 1257
BpmI	CTGGAG	1 cut(s)	941
Bpu10I	CCTNAGC	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	887
BpuMI	CCSGG	1 cut(s)	813
BsaAI	YACGTR	1 cut(s)	346
BsaI	GGTCTC	1 cut(s)	822
BsaJI	CCNNGG	1 cut(s)	118
BsaWI	WCCGGW	1 cut(s)	1044
Bsc4I	CCNNNNNNNGG	2 cut(s)	569, 913
Bse118I	RCCGGY	1 cut(s)	307
Bse1I	ACTGG	6 cut(s)	326, 558, 818, 910, 924, 1070
Bse3DI	GCAATG	2 cut(s)	428, 878
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	3 cut(s)	994, 1084, 1114
BseLI	CCNNNNNNNGG	2 cut(s)	569, 913
BseMI	GCAATG	2 cut(s)	428, 878
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	6 cut(s)	326, 558, 818, 910, 924, 1070
BseXI	GCAGC	1 cut(s)	25
BshFI	GGCC	5 cut(s)	111, 461, 800, 825, 1081
BshNI	GGYRCC	2 cut(s)	352, 409
BsiHKAI	GWGCWC	1 cut(s)	996
BsiHKCI	CYCGRG	1 cut(s)	616
BsiSI	CCGG	5 cut(s)	308, 570, 584, 813, 1045
BslFI	GGGAC	3 cut(s)	206, 599, 956
BslI	CCNNNNNNNGG	2 cut(s)	569, 913
BsmAI	GTCTC	3 cut(s)	109, 569, 822
BsmFI	GGGAC	3 cut(s)	206, 599, 956
BsnI	GGCC	5 cut(s)	111, 461, 800, 825, 1081
Bso31I	GGTCTC	1 cut(s)	822
BsoBI	CYCGRG	1 cut(s)	616
Bsp1286I	GDGCHC	2 cut(s)	854, 996
Bsp143I	GATC	1 cut(s)	78
BspACI	CCGC	7 cut(s)	171, 305, 323, 667, 877, 907, 950
BspANI	GGCC	5 cut(s)	111, 461, 800, 825, 1081
BspCNI	CTCAG	1 cut(s)	376
BspHI	TCATGA	1 cut(s)	1117
BspLI	GGNNCC	4 cut(s)	354, 411, 498, 1080
BspT107I	GGYRCC	2 cut(s)	352, 409
BspTNI	GGTCTC	1 cut(s)	822
BsrDI	GCAATG	2 cut(s)	428, 878
BsrFI	RCCGGY	1 cut(s)	307
BsrI	ACTGG	6 cut(s)	326, 558, 818, 910, 924, 1070
BssAI	RCCGGY	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	1 cut(s)	78
BssSI	CACGAG	1 cut(s)	976
BssT1I	CCWWGG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	976
Bst4CI	ACNGT	1 cut(s)	757
Bst6I	CTCTTC	3 cut(s)	162, 304, 604
BstAPI	GCANNNNNTGC	1 cut(s)	1000
BstBAI	YACGTR	1 cut(s)	346
BstC8I	GCNNGC	2 cut(s)	183, 309
BstDEI	CTNAG	2 cut(s)	131, 384
BstF5I	GGATG	3 cut(s)	994, 1084, 1114
BstH2I	RGCGCY	1 cut(s)	667
BstHHI	GCGC	2 cut(s)	181, 666
BstKTI	GATC	1 cut(s)	81
BstMAI	GTCTC	3 cut(s)	109, 569, 822
BstMBI	GATC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	1 cut(s)	1000
BstNSI	RCATGY	1 cut(s)	1155
BstSCI	CCNGG	1 cut(s)	811
BstSFI	CTRYAG	1 cut(s)	225
BstSNI	TACGTA	1 cut(s)	346
BstV1I	GCAGC	1 cut(s)	25
BsuRI	GGCC	5 cut(s)	111, 461, 800, 825, 1081
BtrI	CACGTC	1 cut(s)	633
BtsCI	GGATG	3 cut(s)	994, 1084, 1114
BtsI	GCAGTG	2 cut(s)	683, 896
BtsIMutI	CAGTG	4 cut(s)	683, 825, 896, 917
Cac8I	GCNNGC	2 cut(s)	183, 309
CciI	TCATGA	1 cut(s)	1117
CfoI	GCGC	2 cut(s)	181, 666
Cfr10I	RCCGGY	1 cut(s)	307
Cfr13I	GGNCC	4 cut(s)	815, 823, 904, 1079
CseI	GACGC	1 cut(s)	958
Csp6I	GTAC	2 cut(s)	653, 1159
CviQI	GTAC	2 cut(s)	653, 1159
DdeI	CTNAG	2 cut(s)	131, 384
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
DraI	TTTAAA	1 cut(s)	520
DraIII	CACNNNGTG	1 cut(s)	52
Eam1104I	CTCTTC	3 cut(s)	162, 304, 604
EarI	CTCTTC	3 cut(s)	162, 304, 604
EciI	GGCGGA	2 cut(s)	312, 892
Eco105I	TACGTA	1 cut(s)	346
Eco130I	CCWWGG	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	800
Eco24I	GRGCYC	1 cut(s)	854
Eco31I	GGTCTC	1 cut(s)	822
Eco47I	GGWCC	2 cut(s)	815, 904
Eco88I	CYCGRG	1 cut(s)	616
EcoT14I	CCWWGG	1 cut(s)	118
EcoT22I	ATGCAT	1 cut(s)	369
EcoT38I	GRGCYC	1 cut(s)	854
ErhI	CCWWGG	1 cut(s)	118
FaqI	GGGAC	3 cut(s)	206, 599, 956
FauNDI	CATATG	1 cut(s)	1181
Fnu4HI	GCNGC	2 cut(s)	14, 667
FokI	GGATG	3 cut(s)	1001, 1071, 1121
FriOI	GRGCYC	1 cut(s)	854
Fsp4HI	GCNGC	2 cut(s)	14, 667
GlaI	GCGC	2 cut(s)	180, 665
GluI	GCNGC	2 cut(s)	14, 667
GsuI	CTGGAG	1 cut(s)	941
HaeII	RGCGCY	1 cut(s)	667
HaeIII	GGCC	5 cut(s)	111, 461, 800, 825, 1081
HapII	CCGG	5 cut(s)	308, 570, 584, 813, 1045
HgaI	GACGC	1 cut(s)	958
HhaI	GCGC	2 cut(s)	181, 666
Hin6I	GCGC	2 cut(s)	179, 664
HinP1I	GCGC	2 cut(s)	179, 664
HincII	GTYRAC	1 cut(s)	1063
HindII	GTYRAC	1 cut(s)	1063
HindIII	AAGCTT	2 cut(s)	133, 863
HinfI	GANTC	8 cut(s)	123, 200, 230, 380, 612, 725, 776, 1114
HpaII	CCGG	5 cut(s)	308, 570, 584, 813, 1045
HphI	GGTGA	4 cut(s)	118, 274, 294, 650
Hpy166II	GTNNAC	2 cut(s)	904, 1063
Hpy188I	TCNGA	5 cut(s)	385, 724, 934, 988, 1101
Hpy188III	TCNNGA	6 cut(s)	52, 439, 616, 1071, 1118, 1126
Hpy8I	GTNNAC	2 cut(s)	904, 1063
HpyAV	CCTTC	6 cut(s)	49, 264, 472, 524, 874, 933
HpyCH4III	ACNGT	1 cut(s)	757
HpyCH4IV	ACGT	6 cut(s)	345, 511, 549, 632, 706, 768
HpyCH4V	TGCA	7 cut(s)	67, 367, 683, 732, 1054, 1196, 1255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1000
HpyF3I	CTNAG	2 cut(s)	131, 384
HpySE526I	ACGT	6 cut(s)	345, 511, 549, 632, 706, 768
HspAI	GCGC	2 cut(s)	179, 664
KroI	GCCGGC	1 cut(s)	307
KroNI	GCCGGC	1 cut(s)	309
Kzo9I	GATC	1 cut(s)	78
LmnI	GCTCC	2 cut(s)	502, 1246
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	1 cut(s)	1026
MaeII	ACGT	6 cut(s)	345, 511, 549, 632, 706, 768
MaeIII	GTNAC	2 cut(s)	628, 1111
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	6 cut(s)	16, 149, 291, 621, 1042, 1180
MhlI	GDGCHC	2 cut(s)	854, 996
MluCI	AATT	7 cut(s)	193, 215, 340, 589, 961, 1022, 1256
MlyI	GAGTC	4 cut(s)	621, 734, 770, 1108
MmeI	TCCRAC	2 cut(s)	587, 723
Mph1103I	ATGCAT	1 cut(s)	369
MroNI	GCCGGC	1 cut(s)	307
MseI	TTAA	2 cut(s)	264, 519
MspA1I	CMGCKG	1 cut(s)	952
MspI	CCGG	5 cut(s)	308, 570, 584, 813, 1045
MspR9I	CCNGG	1 cut(s)	813
MwoI	GCNNNNNNNGC	1 cut(s)	1000
NaeI	GCCGGC	1 cut(s)	309
NciI	CCSGG	1 cut(s)	813
NdeI	CATATG	1 cut(s)	1181
NdeII	GATC	1 cut(s)	78
NgoMIV	GCCGGC	1 cut(s)	307
NlaIV	GGNNCC	4 cut(s)	354, 411, 498, 1080
NmeAIII	GCCGAG	2 cut(s)	381, 851
NmuCI	GTSAC	2 cut(s)	628, 1111
NsiI	ATGCAT	1 cut(s)	369
NspI	RCATGY	1 cut(s)	1155
PagI	TCATGA	1 cut(s)	1117
PceI	AGGCCT	1 cut(s)	800
PciI	ACATGT	1 cut(s)	1151
PdiI	GCCGGC	1 cut(s)	309
PfeI	GAWTC	4 cut(s)	123, 200, 230, 380
PkrI	GCNGC	2 cut(s)	15, 668
PleI	GAGTC	4 cut(s)	620, 733, 770, 1108
PpsI	GAGTC	4 cut(s)	620, 733, 770, 1108
Ppu21I	YACGTR	1 cut(s)	346
PscI	ACATGT	1 cut(s)	1151
Psp1406I	AACGTT	2 cut(s)	511, 706
PspN4I	GGNNCC	4 cut(s)	354, 411, 498, 1080
PspPI	GGNCC	4 cut(s)	815, 823, 904, 1079
RsaI	GTAC	2 cut(s)	654, 1160
RsaNI	GTAC	2 cut(s)	653, 1159
SaqAI	TTAA	2 cut(s)	264, 519
SatI	GCNGC	2 cut(s)	14, 667
Sau3AI	GATC	1 cut(s)	78
Sau96I	GGNCC	4 cut(s)	815, 823, 904, 1079
SchI	GAGTC	4 cut(s)	621, 734, 770, 1108
ScrFI	CCNGG	1 cut(s)	813
SduI	GDGCHC	2 cut(s)	854, 996
SfaNI	GCATC	1 cut(s)	1026
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	2 cut(s)	815, 904
SmlI	CTYRAG	1 cut(s)	866
SmoI	CTYRAG	1 cut(s)	866
SnaBI	TACGTA	1 cut(s)	346
Sse9I	AATT	7 cut(s)	193, 215, 340, 589, 961, 1022, 1256
SseBI	AGGCCT	1 cut(s)	800
SsiI	CCGC	7 cut(s)	171, 305, 323, 667, 877, 907, 950
StuI	AGGCCT	1 cut(s)	800
StyD4I	CCNGG	1 cut(s)	811
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	1 cut(s)	757
TaiI	ACGT	6 cut(s)	348, 514, 552, 635, 709, 771
TaqI	TCGA	7 cut(s)	198, 330, 404, 897, 1040, 1070, 1260
TaqII	GACCGA	1 cut(s)	846
TasI	AATT	7 cut(s)	193, 215, 340, 589, 961, 1022, 1256
TatI	WGTACW	1 cut(s)	1158
TauI	GCSGC	1 cut(s)	669
TfiI	GAWTC	4 cut(s)	123, 200, 230, 380
Tru1I	TTAA	2 cut(s)	264, 519
Tru9I	TTAA	2 cut(s)	264, 519
TscAI	CASTG	4 cut(s)	690, 825, 896, 924
TseFI	GTSAC	2 cut(s)	628, 1111
TseI	GCWGC	1 cut(s)	13
Tsp45I	GTSAC	2 cut(s)	628, 1111
TspDTI	ATGAA	6 cut(s)	17, 285, 454, 543, 700, 1195
TspGWI	ACGGA	2 cut(s)	1077, 1121
TspRI	CASTG	4 cut(s)	690, 825, 896, 924
VpaK11BI	GGWCC	2 cut(s)	815, 904
XapI	RAATTY	2 cut(s)	589, 1022
XceI	RCATGY	1 cut(s)	1155
XcmI	CCANNNNNNNNNTGG	5 cut(s)	370, 454, 484, 685, 790
Zsp2I	ATGCAT	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.