Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8440841.1

Orthogroup ID

OG0004673

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1128

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8440841.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atggtacaaaaagcacttggctgcaaaaagcaccccttgtcctatgatattacagctgcctgtagtggattcgtgttgggtttagtatcagctgcttgtcacattaggggaggtggattcaaaaatgttctagttattggggctgatgctctttctcggattgttgactggtccgacagaggaacctgtattctctttggggatgctgccggggctgttttaatacaggccactgacactgaggaggatttcttacttggttttgacgttcatagtgatggtgacggaaacagacatctaaatgctccgttgaaaggaaatgaaacagatagtgaattgggttctaatggttcagtcttagacttccctccaagacgctcttcattttcttgcgttcaaatgaatggaaaagaagtctttcggtttgcatgtcgatgtgtgccacaatcaattgagaattcacttgcgaatgctggtattcctgcatctagcattgactggttactgctccatcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko01100 ko01212 map00061 map01100 map01212

Pfam Domains

Protein Families

ACP_syn_III ACP_syn_III_C

Protein Analysis

172

Amino Acids

18.28

Weight (kDa)

5.42

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62640 AT1G62640
fragaria_vesca	FvH4_5g00250
malus_domestica	MD04G1085000.v1.1 MD06G1063300.v1.1 MD06G1063400.v1.1 MD08G1135900.v1.1 MD09G1022600.v1.1 MD12G1033000.v1.1
prunus_persica	Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1
pyrus_communis	pycom04g07590 pycom06g06010 pycom08g11500
rosa_chinensis	RchiOBHm_Chr7g0202391
rosa_laevigata	RLG00000003604
rosa_multiflora	Rmu_co8440841.1_g000001 Rmu_sc0000266.1_g000012
rosa_roxburghii	Rroxscaffold_3G00254630
rosa_rugosa	Rorug07G0070200 Rorug07G0070300
rosa_samantha	Rh7AG197800 Rh7BG198800 Rh7CG208800 Rh7DG204500
rosa_wichuraiana	Rw7G017340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	457
AfaI	GTAC	1 cut(s)	6
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	3 cut(s)	121, 313, 398
AjuI	GAANNNNNNNTTGG	2 cut(s)	364, 396
AluBI	AGCT	2 cut(s)	56, 92
AluI	AGCT	2 cut(s)	56, 92
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	4 cut(s)	21, 56, 92, 206
ApoI	RAATTY	1 cut(s)	457
Asp700I	GAANNNNTTC	1 cut(s)	417
AspS9I	GGNCC	1 cut(s)	171
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	171
BbvI	GCAGC	4 cut(s)	8, 43, 79, 193
BccI	CCATC	1 cut(s)	272
BcnI	CCSGG	1 cut(s)	211
BfaI	CTAG	2 cut(s)	131, 489
BfmI	CTRYAG	1 cut(s)	61
BisI	GCNGC	4 cut(s)	22, 57, 93, 207
BlsI	GCNGC	4 cut(s)	23, 58, 94, 208
Bme1390I	CCNGG	1 cut(s)	211
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	211
BmsI	GCATC	3 cut(s)	136, 193, 494
BpuMI	CCSGG	1 cut(s)	211
BsaJI	CCNNGG	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse1I	ACTGG	2 cut(s)	173, 503
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	2 cut(s)	173, 503
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	4 cut(s)	8, 43, 79, 193
BshFI	GGCC	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	210
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmI	GAATGC	1 cut(s)	475
BsnI	GGCC	1 cut(s)	230
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	184
BspQI	GCTCTTC	1 cut(s)	385
BsrI	ACTGG	2 cut(s)	173, 503
BssECI	CCNNGG	1 cut(s)	210
Bst6I	CTCTTC	1 cut(s)	385
BstDEI	CTNAG	2 cut(s)	240, 358
BstF5I	GGATG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNSI	RCATGY	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	209
BstSFI	CTRYAG	1 cut(s)	61
BstV1I	GCAGC	4 cut(s)	8, 43, 79, 193
BsuRI	GGCC	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	2 cut(s)	231, 237
Cfr13I	GGNCC	1 cut(s)	171
CseI	GACGC	1 cut(s)	384
Csp6I	GTAC	1 cut(s)	5
CviAII	CATG	1 cut(s)	429
CviJI	RGCY	6 cut(s)	21, 56, 92, 143, 215, 230
CviKI_1	RGCY	6 cut(s)	21, 56, 92, 143, 215, 230
CviQI	GTAC	1 cut(s)	5
DdeI	CTNAG	2 cut(s)	240, 358
Eam1104I	CTCTTC	1 cut(s)	385
EarI	CTCTTC	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	457
FaeI	CATG	1 cut(s)	432
FaiI	YATR	3 cut(s)	45, 273, 430
FalI	AAGNNNNNCTT	4 cut(s)	20, 52, 364, 396
FatI	CATG	1 cut(s)	428
Fnu4HI	GCNGC	4 cut(s)	22, 57, 93, 207
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	4 cut(s)	22, 57, 93, 207
FspBI	CTAG	2 cut(s)	131, 489
GluI	GCNGC	4 cut(s)	22, 57, 93, 207
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	1 cut(s)	210
HgaI	GACGC	1 cut(s)	384
Hin1II	CATG	1 cut(s)	432
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	2 cut(s)	69, 117
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	159, 175
Hpy8I	GTNNAC	1 cut(s)	166
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	3 cut(s)	24, 428, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	2 cut(s)	240, 358
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	1 cut(s)	432
LguI	GCTCTTC	1 cut(s)	385
LmnI	GCTCC	2 cut(s)	310, 513
LpnPI	CCDG	8 cut(s)	73, 154, 199, 212, 223, 459, 484, 495
Lsp1109I	GCAGC	4 cut(s)	8, 43, 79, 193
LweI	GCATC	3 cut(s)	136, 193, 494
MaeI	CTAG	2 cut(s)	131, 489
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	3 cut(s)	98, 281, 501
MboII	GAAGA	1 cut(s)	372
MfeI	CAATTG	1 cut(s)	450
MluCI	AATT	3 cut(s)	335, 450, 457
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	5 cut(s)	104, 173, 235, 238, 378
MroXI	GAANNNNTTC	1 cut(s)	417
MseI	TTAA	1 cut(s)	221
MslI	CAYNNNNRTG	3 cut(s)	276, 300, 433
MspA1I	CMGCKG	2 cut(s)	56, 92
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	211
MunI	CAATTG	1 cut(s)	450
Mva1269I	GAATGC	1 cut(s)	475
MwoI	GCNNNNNNNGC	1 cut(s)	212
NciI	CCSGG	1 cut(s)	211
NlaIII	CATG	1 cut(s)	432
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	2 cut(s)	98, 281
NspI	RCATGY	1 cut(s)	432
PciSI	GCTCTTC	1 cut(s)	385
PctI	GAATGC	1 cut(s)	475
PdmI	GAANNNNTTC	1 cut(s)	417
PfeI	GAWTC	2 cut(s)	69, 117
PkrI	GCNGC	4 cut(s)	23, 58, 94, 208
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	171
PvuII	CAGCTG	2 cut(s)	56, 92
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
RseI	CAYNNNNRTG	3 cut(s)	276, 300, 433
SapI	GCTCTTC	1 cut(s)	385
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	4 cut(s)	22, 57, 93, 207
Sau96I	GGNCC	1 cut(s)	171
ScrFI	CCNGG	1 cut(s)	211
SetI	ASST	5 cut(s)	58, 94, 115, 188, 270
SfaNI	GCATC	3 cut(s)	136, 193, 494
SfcI	CTRYAG	1 cut(s)	61
SinI	GGWCC	1 cut(s)	171
SmiMI	CAYNNNNRTG	3 cut(s)	276, 300, 433
Sse9I	AATT	3 cut(s)	335, 450, 457
SspMI	CTAG	2 cut(s)	131, 489
StyD4I	CCNGG	1 cut(s)	209
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	1 cut(s)	433
TasI	AATT	3 cut(s)	335, 450, 457
TfiI	GAWTC	2 cut(s)	69, 117
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TscAI	CASTG	2 cut(s)	238, 244
TseFI	GTSAC	2 cut(s)	98, 281
TseI	GCWGC	4 cut(s)	21, 56, 92, 206
Tsp45I	GTSAC	2 cut(s)	98, 281
TspDTI	ATGAA	4 cut(s)	260, 336, 372, 416
TspGWI	ACGGA	2 cut(s)	297, 300
TspRI	CASTG	2 cut(s)	238, 244
VpaK11BI	GGWCC	1 cut(s)	171
XapI	RAATTY	1 cut(s)	457
XceI	RCATGY	1 cut(s)	432
XmnI	GAANNNNTTC	1 cut(s)	417
XspI	CTAG	2 cut(s)	131, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.