MD06G1063400.v1.1

3-oxoacyl- acyl-carrier-protein synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0004673
Physical Location & Seq
Forward (+)
10952953 .. 10954419
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1063400.v1.1.491

Sequence Viewer

Length: 495 bp
ATGCTTACATTTTTTCAATTTGTATTATTTTGTAATTTCAAGTTCAGAAAGCACTTGGTGGGCGCAAGGAATCCTTTAGCATATGATATTACAGCTGCTTGTAGTGGATTTATTTTGGGTCTAGTATTAGCGTCTTGTCACATTAAGGCTGGTGGATTAAAAAATGTTCTTGTTATTGGGGTTGATGCTCTTTCTCGGATTGCCTGCGATGGTGAGGATGATGGTTTGCTTTCTTTTGATATGCATAGTGATGGTGAAGGATACAGACATCTAAATGCCGCCTTGAAAGAAAATGAAACAGACGATGAGTTGGGTTCTAATGGTTCAGTCCTAGGCTTCCCTCCAAGACAAGCTTCATATTCCTGCCTTCAAATGAATGGTAAAGAGGTCTTTCACTTTGCTGTGCGTGTTATGCCGCAGTCAATTGAGTATTCCCTTGCAAAGGCTGGTCTCCCTGCATCTAGCATTGATTTGTTACTGCTCCATCAGGTATGA

Protein Analysis

165

Amino Acids

17.81

Weight (kDa)

5.81

Isoelectric Point (pI)

44.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACP_syn_III PF08545 28 - 67 3.6e-11 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 279, 416
AdeI CACNNNGTG 1 cut(s) 58
AfiI CCNNNNNNNGG 1 cut(s) 442
AgsI TTSAA 4 cut(s) 17, 40, 286, 371
AjuI GAANNNNNNNTTGG 2 cut(s) 337, 369
AluBI AGCT 2 cut(s) 95, 353
AluI AGCT 2 cut(s) 95, 353
Alw26I GTCTC 1 cut(s) 455
ApeKI GCWGC 1 cut(s) 95
AspA2I CCTAGG 1 cut(s) 331
AspLEI GCGC 1 cut(s) 65
AsuHPI GGTGA 2 cut(s) 224, 266
AvrII CCTAGG 1 cut(s) 331
BbvI GCAGC 1 cut(s) 82
BccI CCATC 4 cut(s) 203, 215, 245, 492
BciVI GTATCC 1 cut(s) 254
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 3 cut(s) 122, 332, 462
BfuI GTATCC 1 cut(s) 254
BisI GCNGC 3 cut(s) 96, 279, 416
BlnI CCTAGG 1 cut(s) 331
BlsI GCNGC 3 cut(s) 97, 280, 417
BmsI GCATC 2 cut(s) 175, 467
BsaI GGTCTC 1 cut(s) 455
BsaJI CCNNGG 1 cut(s) 331
Bsc4I CCNNNNNNNGG 1 cut(s) 442
BseDI CCNNGG 1 cut(s) 331
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 442
BseXI GCAGC 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 442
BsmAI GTCTC 1 cut(s) 455
Bso31I GGTCTC 1 cut(s) 455
BspACI CCGC 2 cut(s) 279, 416
BspTNI GGTCTC 1 cut(s) 455
BssECI CCNNGG 1 cut(s) 331
BssT1I CCWWGG 1 cut(s) 331
BstC8I GCNNGC 1 cut(s) 205
BstENI CCTNNNNNAGG 1 cut(s) 440
BstF5I GGATG 1 cut(s) 223
BstHHI GCGC 1 cut(s) 65
BstMAI GTCTC 1 cut(s) 455
BstMWI GCNNNNNNNGC 1 cut(s) 412
BstV1I GCAGC 1 cut(s) 82
BsuI GTATCC 1 cut(s) 254
BtgZI GCGATG 1 cut(s) 222
BtsCI GGATG 1 cut(s) 223
Cac8I GCNNGC 1 cut(s) 205
CfoI GCGC 1 cut(s) 65
CseI GACGC 1 cut(s) 120
CviJI RGCY 5 cut(s) 95, 149, 336, 353, 446
CviKI_1 RGCY 5 cut(s) 95, 149, 336, 353, 446
DraIII CACNNNGTG 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 331
Eco31I GGTCTC 1 cut(s) 455
EcoNI CCTNNNNNAGG 1 cut(s) 440
EcoT14I CCWWGG 1 cut(s) 331
EcoT22I ATGCAT 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 331
FaiI YATR 7 cut(s) 82, 84, 242, 246, 358, 413, 493
FalI AAGNNNNNCTT 4 cut(s) 58, 90, 337, 369
FauNDI CATATG 1 cut(s) 82
Fnu4HI GCNGC 3 cut(s) 96, 279, 416
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 3 cut(s) 96, 279, 416
FspBI CTAG 3 cut(s) 122, 332, 462
GlaI GCGC 1 cut(s) 64
GluI GCNGC 3 cut(s) 96, 279, 416
HgaI GACGC 1 cut(s) 120
HhaI GCGC 1 cut(s) 65
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HindIII AAGCTT 1 cut(s) 351
HinfI GANTC 1 cut(s) 70
HphI GGTGA 2 cut(s) 224, 266
Hpy188I TCNGA 2 cut(s) 47, 198
HpyAV CCTTC 2 cut(s) 251, 377
HpyCH4V TGCA 3 cut(s) 244, 440, 458
HpyF10VI GCNNNNNNNGC 1 cut(s) 412
HspAI GCGC 1 cut(s) 63
LmnI GCTCC 1 cut(s) 486
LpnPI CCDG 6 cut(s) 135, 217, 376, 432, 468, 473
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 2 cut(s) 175, 467
MaeI CTAG 3 cut(s) 122, 332, 462
MaeIII GTNAC 2 cut(s) 137, 474
MfeI CAATTG 1 cut(s) 423
MluCI AATT 3 cut(s) 17, 34, 423
MnlI CCTC 3 cut(s) 208, 351, 379
Mph1103I ATGCAT 1 cut(s) 246
MseI TTAA 2 cut(s) 144, 158
MslI CAYNNNNRTG 2 cut(s) 249, 273
MspA1I CMGCKG 1 cut(s) 95
MunI CAATTG 1 cut(s) 423
MwoI GCNNNNNNNGC 1 cut(s) 412
NdeI CATATG 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 137
NsiI ATGCAT 1 cut(s) 246
PfeI GAWTC 1 cut(s) 70
PkrI GCNGC 3 cut(s) 97, 280, 417
PvuII CAGCTG 1 cut(s) 95
RseI CAYNNNNRTG 2 cut(s) 249, 273
SaqAI TTAA 2 cut(s) 144, 158
SatI GCNGC 3 cut(s) 96, 279, 416
SetI ASST 4 cut(s) 97, 355, 390, 492
SfaNI GCATC 2 cut(s) 175, 467
SmiMI CAYNNNNRTG 2 cut(s) 249, 273
Sse9I AATT 3 cut(s) 17, 34, 423
SsiI CCGC 2 cut(s) 279, 416
SspMI CTAG 3 cut(s) 122, 332, 462
StyI CCWWGG 1 cut(s) 331
TasI AATT 3 cut(s) 17, 34, 423
TauI GCSGC 2 cut(s) 281, 418
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 2 cut(s) 144, 158
Tru9I TTAA 2 cut(s) 144, 158
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 3 cut(s) 309, 345, 389
XagI CCTNNNNNAGG 1 cut(s) 440
XmaJI CCTAGG 1 cut(s) 331
XspI CTAG 3 cut(s) 122, 332, 462
Zsp2I ATGCAT 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.