Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004673

Physical Location & Seq

Genomic Coordinates Forward (+)

48867477 .. 48875289

Gene Structure 7813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00254630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGCCAATGCATCTGGGAGGGTAGTGTTCTGCTCCAGCGCTGAGAAGCAAGCTGGAGCTACTTCCTCTTCTGAATCTAGAGCGCCCAGGCTTGTCAGTAAAGGCTGCAAGTTAATCGGGTGTGGCTCGGCAGTACCCAGTCTTAAGATTTCAAATGACGAGCTTTCAAAAATAGTAGACACTAACGATGAATGGATATCTGTTCGCACTGGGATTCGTAATCGACGAGTTATTTCAGGCAAAGAAAGCCTAACCTTATTAGCATCTGAGGCAGCAAAGAAAGCTCTTGAGATGGCACAGGTTGATGCTGATGATGTAGACCTAATCTTGATGTGCACCTCTACACCTGATGATCTTTTTGGTGGGGCTCCTCAGGTTCAAAAAGCACTTGGCTGCAAAAAGTACCCCTTGTCCTATGATATTACAGCTGCCTGTAGTGGATTCGTATTGGGTTTAGTATCAGCTGCTTGTCACATTAGGGGAGGTGGATTCAAAAATGTTCTAGTTATTGGGGCCGATGCTCTTTCTCGGATTGTTGACTGGTCCGACAGAGGAACCTGTATTCTCTTTGGGGATGCTGCCGGGGCTGTTTTAATACAGGCCACTGACACTGAGGAGGATTTCTTACTTGGTTTTGACGTTCATAGTGATGGTCACGGAAACAGGCACGTACATCTAAATGCTCCGTTGAAAGGAAACGAAACAGATAGTGAATTGGGTTCTAATGGTTCAGTATTAGACTTCCCTCCAAGACCCTCTTCATTTTCTTGCGTTCAAATGAATGGAAAGGAAGTCTTTCGGTTTGCATGTCGATGTGTGCCACAATCAATTGAGAATTCACTTGCGAATGCTGGTATTCCTGCGTCTAGCATTGACTGGTTACTGCTCCATCAGGCAAACCAGAGGATTCTTGATGCAGTTTCTAGTCGCTTGGAAATCCCACCAGAACAGGTCATTTCAAATTTGGCGAACTATGGTAACACCAGTGCTGCTTCCATTCCTTTGGCATTGGATGAATCTGTAAGAAGTGGCAAGGTGCGACCAGGCCATACAATAGCAGCTGCAGGCTTTGGAGCAGGTCTCACTTGGGGTTCTGCTATTCTAAGATGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko01100 ko01212 map00061 map01100 map01212

Pfam Domains

Protein Families

ACP_syn_III ACP_syn_III_C

Protein Analysis

371

Amino Acids

39.03

Weight (kDa)

5.84

Isoelectric Point (pI)

35.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACP_syn_III	PF08545	139 - 218	2.9e-28	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
ACP_syn_III_C	PF08541	281 - 370	6.1e-36	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62640 AT1G62640
fragaria_vesca	FvH4_5g00250
malus_domestica	MD04G1085000.v1.1 MD06G1063300.v1.1 MD06G1063400.v1.1 MD08G1135900.v1.1 MD09G1022600.v1.1 MD12G1033000.v1.1
prunus_persica	Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1
pyrus_communis	pycom04g07590 pycom06g06010 pycom08g11500
rosa_chinensis	RchiOBHm_Chr7g0202391
rosa_laevigata	RLG00000003604
rosa_multiflora	Rmu_co8440841.1_g000001 Rmu_sc0000266.1_g000012
rosa_roxburghii	Rroxscaffold_3G00254630
rosa_rugosa	Rorug07G0070200 Rorug07G0070300
rosa_samantha	Rh7AG197800 Rh7BG198800 Rh7CG208800 Rh7DG204500
rosa_wichuraiana	Rw7G017340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1067
AccI	GTMKAC	2 cut(s)	177, 318
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	835, 961
AfaI	GTAC	3 cut(s)	135, 404, 672
AfeI	AGCGCT	1 cut(s)	40
AfiI	CCNNNNNNNGG	1 cut(s)	692
AflII	CTTAAG	1 cut(s)	143
AgsI	TTSAA	7 cut(s)	153, 168, 380, 493, 691, 776, 960
AjnI	CCWGG	2 cut(s)	86, 1042
AjuI	GAANNNNNNNTTGG	2 cut(s)	742, 774
AluBI	AGCT	7 cut(s)	53, 59, 163, 284, 428, 464, 1061
AluI	AGCT	7 cut(s)	53, 59, 163, 284, 428, 464, 1061
Alw21I	GWGCWC	1 cut(s)	338
Alw26I	GTCTC	1 cut(s)	1085
Alw44I	GTGCAC	1 cut(s)	334
Aor51HI	AGCGCT	1 cut(s)	40
AoxI	GGCC	4 cut(s)	3, 513, 600, 1045
ApaLI	GTGCAC	1 cut(s)	334
ApeKI	GCWGC	9 cut(s)	105, 272, 393, 428, 464, 578, 989, 1058, 1061
ApoI	RAATTY	2 cut(s)	835, 961
Asp700I	GAANNNNTTC	1 cut(s)	795
AspLEI	GCGC	2 cut(s)	41, 85
AspS9I	GGNCC	2 cut(s)	513, 543
AsuC2I	CCSGG	1 cut(s)	583
AvaII	GGWCC	1 cut(s)	543
AxyI	CCTNAGG	1 cut(s)	372
BaeGI	GKGCMC	1 cut(s)	338
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	370
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	9 cut(s)	92, 284, 380, 415, 451, 565, 976, 1048, 1070
BccI	CCATC	4 cut(s)	286, 644, 897, 1101
BcgI	CGANNNNNNTGC	2 cut(s)	97, 131
BciT130I	CCWGG	2 cut(s)	88, 1044
BcnI	CCSGG	1 cut(s)	583
BcoDI	GTCTC	1 cut(s)	1085
BfaI	CTAG	4 cut(s)	78, 503, 867, 924
BfmI	CTRYAG	2 cut(s)	433, 1062
BfoI	RGCGCY	2 cut(s)	42, 86
BfrI	CTTAAG	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	1067
BisI	GCNGC	9 cut(s)	106, 273, 394, 429, 465, 579, 990, 1059, 1062
BlsI	GCNGC	9 cut(s)	107, 274, 395, 430, 466, 580, 991, 1060, 1063
Bme1390I	CCNGG	3 cut(s)	88, 583, 1044
Bme18I	GGWCC	1 cut(s)	543
BmgT120I	GGNCC	2 cut(s)	513, 543
BmiI	GGNNCC	3 cut(s)	369, 514, 556
BmrFI	CCNGG	3 cut(s)	88, 583, 1044
BmrI	ACTGGG	2 cut(s)	132, 219
BmsI	GCATC	6 cut(s)	20, 272, 295, 508, 565, 904
BmuI	ACTGGG	2 cut(s)	132, 219
BplI	GAGNNNNNCTC	2 cut(s)	1065, 1097
BpmI	CTGGAG	2 cut(s)	19, 75
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	583
BsaAI	YACGTR	1 cut(s)	670
BsaI	GGTCTC	1 cut(s)	1085
BsaJI	CCNNGG	2 cut(s)	86, 582
Bsc4I	CCNNNNNNNGG	1 cut(s)	692
Bse1I	ACTGG	5 cut(s)	138, 214, 545, 881, 984
Bse21I	CCTNAGG	1 cut(s)	372
BseBI	CCWGG	2 cut(s)	88, 1044
BseDI	CCNNGG	2 cut(s)	86, 582
BseGI	GGATG	2 cut(s)	580, 1018
BseLI	CCNNNNNNNGG	1 cut(s)	692
BseMII	CTCAG	4 cut(s)	33, 258, 386, 603
BseNI	ACTGG	5 cut(s)	138, 214, 545, 881, 984
BseRI	GAGGAG	2 cut(s)	360, 629
BseSI	GKGCMC	1 cut(s)	338
BseXI	GCAGC	9 cut(s)	92, 284, 380, 415, 451, 565, 976, 1048, 1070
BshFI	GGCC	4 cut(s)	5, 515, 602, 1047
BsiHKAI	GWGCWC	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	582
BslI	CCNNNNNNNGG	1 cut(s)	692
BsmAI	GTCTC	1 cut(s)	1085
BsmI	GAATGC	1 cut(s)	853
BsnI	GGCC	4 cut(s)	5, 515, 602, 1047
Bso31I	GGTCTC	1 cut(s)	1085
Bsp1286I	GDGCHC	2 cut(s)	338, 370
Bsp143I	GATC	1 cut(s)	352
BspANI	GGCC	4 cut(s)	5, 515, 602, 1047
BspCNI	CTCAG	4 cut(s)	34, 259, 385, 604
BspLI	GGNNCC	3 cut(s)	369, 514, 556
BspMAI	CTGCAG	1 cut(s)	1066
BspMI	ACCTGC	1 cut(s)	1067
BspTI	CTTAAG	1 cut(s)	143
BspTNI	GGTCTC	1 cut(s)	1085
BsrI	ACTGG	5 cut(s)	138, 214, 545, 881, 984
BssECI	CCNNGG	2 cut(s)	86, 582
BssMI	GATC	1 cut(s)	352
Bst2UI	CCWGG	2 cut(s)	88, 1044
Bst6I	CTCTTC	2 cut(s)	73, 763
BstAFI	CTTAAG	1 cut(s)	143
BstBAI	YACGTR	1 cut(s)	670
BstC8I	GCNNGC	2 cut(s)	51, 1066
BstDEI	CTNAG	5 cut(s)	42, 267, 372, 612, 1103
BstF5I	GGATG	2 cut(s)	580, 1018
BstH2I	RGCGCY	2 cut(s)	42, 86
BstHHI	GCGC	2 cut(s)	41, 85
BstKTI	GATC	1 cut(s)	355
BstMAI	GTCTC	1 cut(s)	1085
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	4 cut(s)	246, 269, 281, 584
BstNI	CCWGG	2 cut(s)	88, 1044
BstNSI	RCATGY	1 cut(s)	810
BstSCI	CCNGG	3 cut(s)	86, 581, 1042
BstSFI	CTRYAG	2 cut(s)	433, 1062
BstSLI	GKGCMC	1 cut(s)	338
BstV1I	GCAGC	9 cut(s)	92, 284, 380, 415, 451, 565, 976, 1048, 1070
BstXI	CCANNNNNNTGG	1 cut(s)	1003
Bsu36I	CCTNAGG	1 cut(s)	372
BsuRI	GGCC	4 cut(s)	5, 515, 602, 1047
BtsCI	GGATG	2 cut(s)	580, 1018
BtsIMutI	CAGTG	4 cut(s)	207, 603, 609, 991
BveI	ACCTGC	1 cut(s)	1067
Cac8I	GCNNGC	2 cut(s)	51, 1066
CfoI	GCGC	2 cut(s)	41, 85
Cfr13I	GGNCC	2 cut(s)	513, 543
CseI	GACGC	1 cut(s)	852
Csp6I	GTAC	3 cut(s)	134, 403, 671
CviAII	CATG	1 cut(s)	807
CviQI	GTAC	3 cut(s)	134, 403, 671
DdeI	CTNAG	5 cut(s)	42, 267, 372, 612, 1103
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	73, 763
EarI	CTCTTC	2 cut(s)	73, 763
Eco24I	GRGCYC	1 cut(s)	370
Eco31I	GGTCTC	1 cut(s)	1085
Eco32I	GATATC	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	543
Eco47III	AGCGCT	1 cut(s)	40
Eco81I	CCTNAGG	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	835
EcoRII	CCWGG	2 cut(s)	86, 1042
EcoRV	GATATC	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	370
FaeI	CATG	1 cut(s)	810
FaiI	YATR	5 cut(s)	417, 645, 808, 975, 1050
FalI	AAGNNNNNCTT	6 cut(s)	392, 424, 742, 774, 779, 811
FatI	CATG	1 cut(s)	806
FblI	GTMKAC	2 cut(s)	177, 318
Fnu4HI	GCNGC	9 cut(s)	106, 273, 394, 429, 465, 579, 990, 1059, 1062
FokI	GGATG	2 cut(s)	587, 1025
FriOI	GRGCYC	1 cut(s)	370
Fsp4HI	GCNGC	9 cut(s)	106, 273, 394, 429, 465, 579, 990, 1059, 1062
FspBI	CTAG	4 cut(s)	78, 503, 867, 924
GlaI	GCGC	2 cut(s)	40, 84
GluI	GCNGC	9 cut(s)	106, 273, 394, 429, 465, 579, 990, 1059, 1062
GsuI	CTGGAG	2 cut(s)	19, 75
HaeII	RGCGCY	2 cut(s)	42, 86
HaeIII	GGCC	4 cut(s)	5, 515, 602, 1047
HapII	CCGG	1 cut(s)	582
HgaI	GACGC	1 cut(s)	852
HhaI	GCGC	2 cut(s)	41, 85
Hin1II	CATG	1 cut(s)	810
Hin6I	GCGC	2 cut(s)	39, 83
HinP1I	GCGC	2 cut(s)	39, 83
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HinfI	GANTC	6 cut(s)	74, 214, 441, 489, 907, 1016
HpaII	CCGG	1 cut(s)	582
Hpy166II	GTNNAC	4 cut(s)	178, 319, 336, 538
Hpy188I	TCNGA	4 cut(s)	73, 268, 531, 547
Hpy188III	TCNNGA	4 cut(s)	78, 287, 328, 911
Hpy8I	GTNNAC	4 cut(s)	178, 319, 336, 538
Hpy99I	CGWCG	1 cut(s)	228
HpyCH4IV	ACGT	2 cut(s)	639, 669
HpyCH4V	TGCA	7 cut(s)	11, 108, 336, 396, 806, 917, 1064
HpyF10VI	GCNNNNNNNGC	4 cut(s)	246, 269, 281, 584
HpyF3I	CTNAG	5 cut(s)	42, 267, 372, 612, 1103
HpySE526I	ACGT	2 cut(s)	639, 669
Hsp92II	CATG	1 cut(s)	810
HspAI	GCGC	2 cut(s)	39, 83
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	6 cut(s)	38, 56, 373, 688, 891, 1073
Lsp1109I	GCAGC	9 cut(s)	92, 284, 380, 415, 451, 565, 976, 1048, 1070
LweI	GCATC	6 cut(s)	20, 272, 295, 508, 565, 904
MaeI	CTAG	4 cut(s)	78, 503, 867, 924
MaeII	ACGT	2 cut(s)	639, 669
MaeIII	GTNAC	4 cut(s)	470, 653, 879, 977
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	2 cut(s)	60, 750
MfeI	CAATTG	1 cut(s)	828
MhlI	GDGCHC	2 cut(s)	338, 370
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	713, 828, 835, 961
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	570
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	13
MroXI	GAANNNNTTC	1 cut(s)	795
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	113, 144, 593
MslI	CAYNNNNRTG	3 cut(s)	648, 678, 811
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	428, 464, 1061
MspCI	CTTAAG	1 cut(s)	143
MspI	CCGG	1 cut(s)	582
MspR9I	CCNGG	3 cut(s)	88, 583, 1044
MunI	CAATTG	1 cut(s)	828
Mva1269I	GAATGC	1 cut(s)	853
MvaI	CCWGG	2 cut(s)	88, 1044
MwoI	GCNNNNNNNGC	4 cut(s)	246, 269, 281, 584
NciI	CCSGG	1 cut(s)	583
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	1 cut(s)	810
NlaIV	GGNNCC	3 cut(s)	369, 514, 556
NmeAIII	GCCGAG	1 cut(s)	107
NmuCI	GTSAC	2 cut(s)	470, 653
NsiI	ATGCAT	1 cut(s)	13
NspI	RCATGY	1 cut(s)	810
PcsI	WCGNNNNNNNCGW	1 cut(s)	223
PctI	GAATGC	1 cut(s)	853
PdmI	GAANNNNTTC	1 cut(s)	795
PfeI	GAWTC	6 cut(s)	74, 214, 441, 489, 907, 1016
PkrI	GCNGC	9 cut(s)	107, 274, 395, 430, 466, 580, 991, 1060, 1063
Ppu21I	YACGTR	1 cut(s)	670
Psp6I	CCWGG	2 cut(s)	86, 1042
PspGI	CCWGG	2 cut(s)	86, 1042
PspN4I	GGNNCC	3 cut(s)	369, 514, 556
PspPI	GGNCC	2 cut(s)	513, 543
PstI	CTGCAG	1 cut(s)	1066
PvuII	CAGCTG	3 cut(s)	428, 464, 1061
RsaI	GTAC	3 cut(s)	135, 404, 672
RsaNI	GTAC	3 cut(s)	134, 403, 671
RseI	CAYNNNNRTG	3 cut(s)	648, 678, 811
SaqAI	TTAA	3 cut(s)	113, 144, 593
SatI	GCNGC	9 cut(s)	106, 273, 394, 429, 465, 579, 990, 1059, 1062
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	2 cut(s)	513, 543
ScrFI	CCNGG	3 cut(s)	88, 583, 1044
SduI	GDGCHC	2 cut(s)	338, 370
SfaNI	GCATC	6 cut(s)	20, 272, 295, 508, 565, 904
SfcI	CTRYAG	2 cut(s)	433, 1062
SinI	GGWCC	1 cut(s)	543
SmiMI	CAYNNNNRTG	3 cut(s)	648, 678, 811
SmlI	CTYRAG	2 cut(s)	143, 287
SmoI	CTYRAG	2 cut(s)	143, 287
Sse9I	AATT	4 cut(s)	713, 828, 835, 961
SspMI	CTAG	4 cut(s)	78, 503, 867, 924
StyD4I	CCNGG	3 cut(s)	86, 581, 1042
TaiI	ACGT	2 cut(s)	642, 672
TaqI	TCGA	2 cut(s)	223, 811
TasI	AATT	4 cut(s)	713, 828, 835, 961
TfiI	GAWTC	6 cut(s)	74, 214, 441, 489, 907, 1016
Tru1I	TTAA	3 cut(s)	113, 144, 593
Tru9I	TTAA	3 cut(s)	113, 144, 593
TscAI	CASTG	4 cut(s)	214, 610, 616, 991
TseFI	GTSAC	2 cut(s)	470, 653
TseI	GCWGC	9 cut(s)	105, 272, 393, 428, 464, 578, 989, 1058, 1061
Tsp45I	GTSAC	2 cut(s)	470, 653
TspDTI	ATGAA	5 cut(s)	204, 632, 750, 794, 1029
TspGWI	ACGGA	2 cut(s)	672, 675
TspRI	CASTG	4 cut(s)	214, 610, 616, 991
Vha464I	CTTAAG	1 cut(s)	143
VneI	GTGCAC	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	543
XapI	RAATTY	2 cut(s)	835, 961
XbaI	TCTAGA	1 cut(s)	77
XceI	RCATGY	1 cut(s)	810
XmiI	GTMKAC	2 cut(s)	177, 318
XmnI	GAANNNNTTC	1 cut(s)	795
XspI	CTAG	4 cut(s)	78, 503, 867, 924
Zsp2I	ATGCAT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.