Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004673

Physical Location & Seq

Genomic Coordinates Forward (+)

169915 .. 174955

Gene Structure 5041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g00250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGCCAATGCATCTGGGTTCTTTACTACTCCTTCAGTTCCCAGCCTGAGGAGGAAGGTTCAGCCTTCATTAGCCATTTTTGGATCTGGGTTTCGCTCCCCTGAGGGATTCTCCAGGAGGGTAGTGTTCTGCTCCAGCGTTGAGAAGCAAGCTGGAGCTTCCTCCTCTACTGAATCTAGAGCACCCAGGCTTGTCAGTAAAGGCTGCAAATTAGTTGGGTGTGGCTCGGCAGTACCCAGTCTTAATATTTCAAATGACGAGCTTTCAAAAATAGTAGACACTAACGATGAATGGATATCTGTTCGTACTGGGATTCGTAATCGACGAGTTATTTCAGGCAAAGAAAGCCTAACCTTATTAGCAGCGGAGGCAGCAAAGAAAGCTCTTGAGATGGCACAGGTTGATGCTGATGATGTAGACCTAATCTTGATGTGCACCTCTACACCTGATGATCTTTTTGGCGGTGCTCCTCAGGTTCAAAAAGCACTTGGCTGCAAAAAGAACCCCTTGTCCTATGATATAACAGCTGCCTGTAGTGGATTCGTATTGGGTTTAGTATCAGCTGCTTGTCACATTAGGGGAGGCGGATTCAAAAATGTTCTAGTTATCGGGGCTGATGCTCTTTCTCGGTTTGTTGACTGGTCTGACAGAGGAACCTGTATTCTCTTTGGGGATGCTGCCGGGGCTGTTTTAGTACAGGCCTCTGACATTGAGGAGGATTTCTTACTTGGTTTTGATGTTCATAGTGATGGTGACGGAAGCAGACATCTAAATGCTACATTCAAAGGAAATGAAACAGATAGTGAATTGGGTTCTAATGGTTCAGTCTTAGACTTCCCTCCAAGACGATCTTCATATTCTTGTGTTCAAATGAATGGAAAAGAAGTCTTTCGGTTTGCATGTCGAAGTGTGCCACAATCGATTGAGAATTCGCTTGCAAATGCTGGTATCCCTGCATCTAGCATTGATTGGTTACTGCTCCATCAGGCAAACCAGAGGATTCTTGATGCAGTTTCTAGTCGCTTGGATATCCCATCAGAACAGGTTATATCAAATTTGGCGAACTATGGTAACACAAGTGCCGCTTCGATTCCTTTGGCCTTAGATGAATCTGTAAGAAGTGGCAAGGTGAAACCAGGCCATACAATAGCAGCTGCAGGCTTCGGAGCAGGTCTCACGTGGGGTTCGGCTATTCTAAGATGGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko01100 ko01212 map00061 map01100 map01212

Pfam Domains

Protein Families

ACP_syn_III ACP_syn_III_C

Protein Analysis

403

Amino Acids

42.38

Weight (kDa)

6.25

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACP_syn_III	PF08545	172 - 251	9.5e-28	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
ACP_syn_III_C	PF08541	312 - 401	1.2e-35	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62640 AT1G62640
fragaria_vesca	FvH4_5g00250
malus_domestica	MD04G1085000.v1.1 MD06G1063300.v1.1 MD06G1063400.v1.1 MD08G1135900.v1.1 MD09G1022600.v1.1 MD12G1033000.v1.1
prunus_persica	Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1
pyrus_communis	pycom04g07590 pycom06g06010 pycom08g11500
rosa_chinensis	RchiOBHm_Chr7g0202391
rosa_laevigata	RLG00000003604
rosa_multiflora	Rmu_co8440841.1_g000001 Rmu_sc0000266.1_g000012
rosa_roxburghii	Rroxscaffold_3G00254630
rosa_rugosa	Rorug07G0070200 Rorug07G0070300
rosa_samantha	Rh7AG197800 Rh7BG198800 Rh7CG208800 Rh7DG204500
rosa_wichuraiana	Rw7G017340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1160
AccI	GTMKAC	2 cut(s)	276, 417
AciI	CCGC	4 cut(s)	365, 462, 585, 1083
AclWI	GGATC	1 cut(s)	91
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	928, 1054
AcuI	CTGAAG	1 cut(s)	18
AcvI	CACGTG	1 cut(s)	1179
AfaI	GTAC	3 cut(s)	234, 307, 696
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	6 cut(s)	252, 267, 479, 592, 784, 869
AjnI	CCWGG	3 cut(s)	113, 185, 1135
AjuI	GAANNNNNNNTTGG	2 cut(s)	835, 867
AloI	GAACNNNNNNTCC	2 cut(s)	494, 526
AluBI	AGCT	7 cut(s)	152, 158, 262, 383, 527, 563, 1154
AluI	AGCT	7 cut(s)	152, 158, 262, 383, 527, 563, 1154
Alw21I	GWGCWC	3 cut(s)	184, 437, 469
Alw26I	GTCTC	1 cut(s)	1178
Alw44I	GTGCAC	1 cut(s)	433
AlwI	GGATC	1 cut(s)	91
AoxI	GGCC	4 cut(s)	3, 699, 1098, 1138
ApaLI	GTGCAC	1 cut(s)	433
ApeKI	GCWGC	9 cut(s)	204, 362, 371, 492, 527, 563, 677, 1151, 1154
ApoI	RAATTY	2 cut(s)	928, 1054
Asp700I	GAANNNNTTC	1 cut(s)	888
AsuC2I	CCSGG	1 cut(s)	682
AsuHPI	GGTGA	2 cut(s)	764, 1141
AxyI	CCTNAGG	3 cut(s)	47, 102, 471
BaeGI	GKGCMC	1 cut(s)	437
BalI	TGGCCA	1 cut(s)	5
BbrPI	CACGTG	1 cut(s)	1179
Bbv12I	GWGCWC	3 cut(s)	184, 437, 469
BbvI	GCAGC	9 cut(s)	191, 374, 383, 479, 514, 550, 664, 1141, 1163
BccI	CCATC	5 cut(s)	385, 743, 990, 1042, 1194
BciT130I	CCWGG	3 cut(s)	115, 187, 1137
BciVI	GTATCC	1 cut(s)	959
BcnI	CCSGG	1 cut(s)	682
BcoDI	GTCTC	1 cut(s)	1178
BfaI	CTAG	4 cut(s)	177, 602, 960, 1017
BfmI	CTRYAG	2 cut(s)	532, 1155
BfuAI	ACCTGC	1 cut(s)	1160
BfuI	GTATCC	1 cut(s)	959
Bme1390I	CCNGG	4 cut(s)	115, 187, 682, 1137
BmiI	GGNNCC	1 cut(s)	655
BmrFI	CCNGG	4 cut(s)	115, 187, 682, 1137
BmrI	ACTGGG	2 cut(s)	231, 318
BmsI	GCATC	6 cut(s)	20, 394, 607, 664, 965, 997
BmuI	ACTGGG	2 cut(s)	231, 318
BplI	GAGNNNNNCTC	4 cut(s)	95, 127, 1158, 1190
BpmI	CTGGAG	3 cut(s)	97, 118, 174
BpuEI	CTTGAG	1 cut(s)	407
BpuMI	CCSGG	1 cut(s)	682
Bsa29I	ATCGAT	1 cut(s)	920
BsaAI	YACGTR	1 cut(s)	1179
BsaI	GGTCTC	1 cut(s)	1178
BsaJI	CCNNGG	2 cut(s)	185, 681
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse1I	ACTGG	3 cut(s)	237, 313, 644
Bse21I	CCTNAGG	3 cut(s)	47, 102, 471
BseBI	CCWGG	3 cut(s)	115, 187, 1137
BseCI	ATCGAT	1 cut(s)	920
BseDI	CCNNGG	2 cut(s)	185, 681
BseGI	GGATG	1 cut(s)	679
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMII	CTCAG	3 cut(s)	38, 93, 485
BseNI	ACTGG	3 cut(s)	237, 313, 644
BseRI	GAGGAG	4 cut(s)	64, 154, 459, 728
BseSI	GKGCMC	1 cut(s)	437
BseXI	GCAGC	9 cut(s)	191, 374, 383, 479, 514, 550, 664, 1141, 1163
BseYI	CCCAGC	1 cut(s)	41
BshFI	GGCC	4 cut(s)	5, 701, 1100, 1140
BshVI	ATCGAT	1 cut(s)	920
BsiHKAI	GWGCWC	3 cut(s)	184, 437, 469
BsiSI	CCGG	1 cut(s)	681
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	1178
BsnI	GGCC	4 cut(s)	5, 701, 1100, 1140
Bso31I	GGTCTC	1 cut(s)	1178
Bsp1286I	GDGCHC	3 cut(s)	184, 437, 469
Bsp143I	GATC	3 cut(s)	83, 451, 848
BspACI	CCGC	4 cut(s)	365, 462, 585, 1083
BspANI	GGCC	4 cut(s)	5, 701, 1100, 1140
BspCNI	CTCAG	3 cut(s)	39, 94, 484
BspDI	ATCGAT	1 cut(s)	920
BspLI	GGNNCC	1 cut(s)	655
BspMAI	CTGCAG	1 cut(s)	1159
BspMI	ACCTGC	1 cut(s)	1160
BspPI	GGATC	1 cut(s)	91
BspTNI	GGTCTC	1 cut(s)	1178
BsrI	ACTGG	3 cut(s)	237, 313, 644
BssECI	CCNNGG	2 cut(s)	185, 681
BssMI	GATC	3 cut(s)	83, 451, 848
Bst2UI	CCWGG	3 cut(s)	115, 187, 1137
BstBAI	YACGTR	1 cut(s)	1179
BstC8I	GCNNGC	3 cut(s)	150, 936, 1159
BstDEI	CTNAG	6 cut(s)	47, 102, 471, 829, 1102, 1196
BstF5I	GGATG	1 cut(s)	679
BstKTI	GATC	3 cut(s)	86, 454, 851
BstMAI	GTCTC	1 cut(s)	1178
BstMBI	GATC	3 cut(s)	83, 451, 848
BstMWI	GCNNNNNNNGC	5 cut(s)	345, 368, 371, 380, 683
BstNI	CCWGG	3 cut(s)	115, 187, 1137
BstNSI	RCATGY	1 cut(s)	903
BstSCI	CCNGG	4 cut(s)	113, 185, 680, 1135
BstSFI	CTRYAG	2 cut(s)	532, 1155
BstSLI	GKGCMC	1 cut(s)	437
BstV1I	GCAGC	9 cut(s)	191, 374, 383, 479, 514, 550, 664, 1141, 1163
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
Bsu15I	ATCGAT	1 cut(s)	920
Bsu36I	CCTNAGG	3 cut(s)	47, 102, 471
BsuI	GTATCC	1 cut(s)	959
BsuRI	GGCC	4 cut(s)	5, 701, 1100, 1140
BsuTUI	ATCGAT	1 cut(s)	920
BtsCI	GGATG	1 cut(s)	679
BveI	ACCTGC	1 cut(s)	1160
Cac8I	GCNNGC	3 cut(s)	150, 936, 1159
ClaI	ATCGAT	1 cut(s)	920
Csp6I	GTAC	3 cut(s)	233, 306, 695
CviAII	CATG	1 cut(s)	900
CviQI	GTAC	3 cut(s)	233, 306, 695
DdeI	CTNAG	6 cut(s)	47, 102, 471, 829, 1102, 1196
DpnI	GATC	3 cut(s)	85, 453, 850
DpnII	GATC	3 cut(s)	83, 451, 848
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	600
Eco147I	AGGCCT	1 cut(s)	701
Eco31I	GGTCTC	1 cut(s)	1178
Eco32I	GATATC	2 cut(s)	297, 1030
Eco57I	CTGAAG	1 cut(s)	18
Eco72I	CACGTG	1 cut(s)	1179
Eco81I	CCTNAGG	3 cut(s)	47, 102, 471
EcoRI	GAATTC	1 cut(s)	928
EcoRII	CCWGG	3 cut(s)	113, 185, 1135
EcoRV	GATATC	2 cut(s)	297, 1030
EcoT22I	ATGCAT	1 cut(s)	13
FaeI	CATG	1 cut(s)	903
FaiI	YATR	8 cut(s)	516, 521, 744, 856, 901, 1049, 1068, 1143
FalI	AAGNNNNNCTT	6 cut(s)	491, 523, 835, 867, 1069, 1101
FatI	CATG	1 cut(s)	899
FblI	GTMKAC	2 cut(s)	276, 417
FokI	GGATG	1 cut(s)	686
FspBI	CTAG	4 cut(s)	177, 602, 960, 1017
GsaI	CCCAGC	1 cut(s)	45
GsuI	CTGGAG	3 cut(s)	97, 118, 174
HaeIII	GGCC	4 cut(s)	5, 701, 1100, 1140
HapII	CCGG	1 cut(s)	681
Hin1II	CATG	1 cut(s)	903
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HinfI	GANTC	8 cut(s)	108, 173, 313, 540, 588, 1000, 1090, 1109
HpaII	CCGG	1 cut(s)	681
HphI	GGTGA	2 cut(s)	764, 1141
Hpy166II	GTNNAC	4 cut(s)	277, 418, 435, 637
Hpy188I	TCNGA	4 cut(s)	646, 706, 1039, 1166
Hpy188III	TCNNGA	4 cut(s)	177, 386, 427, 1004
Hpy8I	GTNNAC	4 cut(s)	277, 418, 435, 637
Hpy99I	CGWCG	1 cut(s)	327
HpyAV	CCTTC	3 cut(s)	42, 49, 75
HpyCH4IV	ACGT	1 cut(s)	1178
HpyCH4V	TGCA	9 cut(s)	11, 207, 435, 495, 899, 938, 956, 1010, 1157
HpyF10VI	GCNNNNNNNGC	5 cut(s)	345, 368, 371, 380, 683
HpyF3I	CTNAG	6 cut(s)	47, 102, 471, 829, 1102, 1196
HpySE526I	ACGT	1 cut(s)	1178
Hsp92II	CATG	1 cut(s)	903
Kzo9I	GATC	3 cut(s)	83, 451, 848
LmnI	GCTCC	6 cut(s)	101, 137, 155, 472, 984, 1166
Lsp1109I	GCAGC	9 cut(s)	191, 374, 383, 479, 514, 550, 664, 1141, 1163
LweI	GCATC	6 cut(s)	20, 394, 607, 664, 965, 997
MaeI	CTAG	4 cut(s)	177, 602, 960, 1017
MaeII	ACGT	1 cut(s)	1178
MaeIII	GTNAC	4 cut(s)	569, 752, 972, 1070
MalI	GATC	3 cut(s)	85, 453, 850
MboI	GATC	3 cut(s)	83, 451, 848
MboII	GAAGA	1 cut(s)	843
MflI	RGATCY	1 cut(s)	83
MhlI	GDGCHC	3 cut(s)	184, 437, 469
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	209, 806, 928, 1054
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	13
MroXI	GAANNNNTTC	1 cut(s)	888
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	2 cut(s)	747, 771
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	4 cut(s)	365, 527, 563, 1154
MspI	CCGG	1 cut(s)	681
MspR9I	CCNGG	4 cut(s)	115, 187, 682, 1137
MvaI	CCWGG	3 cut(s)	115, 187, 1137
MwoI	GCNNNNNNNGC	5 cut(s)	345, 368, 371, 380, 683
NciI	CCSGG	1 cut(s)	682
NdeII	GATC	3 cut(s)	83, 451, 848
NlaIII	CATG	1 cut(s)	903
NlaIV	GGNNCC	1 cut(s)	655
NmeAIII	GCCGAG	1 cut(s)	206
NmuCI	GTSAC	2 cut(s)	569, 752
NsiI	ATGCAT	1 cut(s)	13
NspI	RCATGY	1 cut(s)	903
PceI	AGGCCT	1 cut(s)	701
PcsI	WCGNNNNNNNCGW	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	888
PfeI	GAWTC	8 cut(s)	108, 173, 313, 540, 588, 1000, 1090, 1109
PfoI	TCCNGGA	1 cut(s)	113
PmaCI	CACGTG	1 cut(s)	1179
PmlI	CACGTG	1 cut(s)	1179
Ppu21I	YACGTR	1 cut(s)	1179
Psp6I	CCWGG	3 cut(s)	113, 185, 1135
PspCI	CACGTG	1 cut(s)	1179
PspFI	CCCAGC	1 cut(s)	41
PspGI	CCWGG	3 cut(s)	113, 185, 1135
PspN4I	GGNNCC	1 cut(s)	655
PstI	CTGCAG	1 cut(s)	1159
PsuI	RGATCY	1 cut(s)	83
PvuII	CAGCTG	3 cut(s)	527, 563, 1154
RsaI	GTAC	3 cut(s)	234, 307, 696
RsaNI	GTAC	3 cut(s)	233, 306, 695
RseI	CAYNNNNRTG	2 cut(s)	747, 771
SaqAI	TTAA	1 cut(s)	243
Sau3AI	GATC	3 cut(s)	83, 451, 848
ScrFI	CCNGG	4 cut(s)	115, 187, 682, 1137
SduI	GDGCHC	3 cut(s)	184, 437, 469
SfaNI	GCATC	6 cut(s)	20, 394, 607, 664, 965, 997
SfcI	CTRYAG	2 cut(s)	532, 1155
SmiMI	CAYNNNNRTG	2 cut(s)	747, 771
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	4 cut(s)	209, 806, 928, 1054
SseBI	AGGCCT	1 cut(s)	701
SsiI	CCGC	4 cut(s)	365, 462, 585, 1083
SspI	AATATT	1 cut(s)	247
SspMI	CTAG	4 cut(s)	177, 602, 960, 1017
StuI	AGGCCT	1 cut(s)	701
StyD4I	CCNGG	4 cut(s)	113, 185, 680, 1135
TaiI	ACGT	1 cut(s)	1181
TaqI	TCGA	4 cut(s)	322, 904, 920, 1088
TasI	AATT	4 cut(s)	209, 806, 928, 1054
TatI	WGTACW	1 cut(s)	694
TauI	GCSGC	1 cut(s)	1085
TfiI	GAWTC	8 cut(s)	108, 173, 313, 540, 588, 1000, 1090, 1109
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TseFI	GTSAC	2 cut(s)	569, 752
TseI	GCWGC	9 cut(s)	204, 362, 371, 492, 527, 563, 677, 1151, 1154
Tsp45I	GTSAC	2 cut(s)	569, 752
TspDTI	ATGAA	7 cut(s)	57, 303, 731, 807, 843, 887, 1122
TspGWI	ACGGA	1 cut(s)	771
VneI	GTGCAC	1 cut(s)	433
XapI	RAATTY	2 cut(s)	928, 1054
XbaI	TCTAGA	1 cut(s)	176
XceI	RCATGY	1 cut(s)	903
XmiI	GTMKAC	2 cut(s)	276, 417
XmnI	GAANNNNTTC	1 cut(s)	888
XspI	CTAG	4 cut(s)	177, 602, 960, 1017
Zsp2I	ATGCAT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.