pycom06g06010

3-oxoacyl- acyl-carrier-protein synthase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
9224019 .. 9228759
4741 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g06010.5

Sequence Viewer

Length: 1218 bp
ATGGCCACCAATGCATCTGGGTTCTTCACTGCTCCTACAGTTCCGAGCCAGAGGAGGAAGATTCAGCCTTCAATACGCATTTTTGGATCTGGGTTTCGTTCCCCTGAGGGAATCTCCAAGAGGGTATTCTGCTCCAGCATTTTTGAAGGCGCAGAGAAGCATGTTGGAGCTTCCGCTTCTGAATCTCGATCACCCAAGCTTGCCAGTAAAGGCTGCAAGTTAATTGGATGCGGCTCAGCAGTACCCAGTCTTAAGATTTCAAATGATGATCTTGCGAAAGTAGTAGATACTAACGATGAATGGATATCCGTTCGCACTGGGATTCGCAATCGACGAGTTATTTCAGGCAAAGAGAGCCTGACAACGTTAGCGGTCGAGGCAGCGCATAAAGCTCTTGAGATGGCACAGGTTGATGTTGATGATGTGGACCTAATCTTGGTGTGCACATCTACGCCTGATGATATCTTTGGCTGTGCCCCTAAGGTTCAGAAAGCACTCGGCTGCGCAAGGAATCCTTTAGCGTATGATATTACAGCTGCTTGTAGTGGATTTATTTTGGGTCTACTATCAGCGTCTTGTCATATTAAGGCTGGTGGATTTAAAAATGTTCTTGTTATTGGGGCTGATGCTCTTTCTCGGATTGTTGACTGGACCGATAGAGGAACGTGTATTCTCTTTGGGGATGCTGCTGGGGCTGTATTAATGCAGGCCTGCGATGGTGAGGATGATGGTTTGCTTTCTTTTGATGTGCATAGTGATGGTGAAGGATACAGACATCTAAACGCCGCCTTGAAAGAAAATGAAACAGACGATGAGTTGGGTTCTAATGGTTCAGTCCTAGGCTTCCCTCCAAGACAAGCTTCATATTCCTGCCTTCAAATGAATGGCAAAGAGGTCTTTCGCTTTGCTGTGCGTGTTGTGCCGCAGTCAATTGAGTGTTCCCTTGCAAAGGCTGGTCTCCCTGCATCTAGCATTGATTGGTTACTGCTCCATCAGGCAAACCAGAGGATCCTTGATGCGGTTTCTACTCGCATGCAAATCCCATCAGAACAGGTGATTTCAAACTTGGCAAACTATGGCAACACGAGCGCTGGTTCCATACCGTTGGCATTGGACGAAGCTGTGAGAAGCGGGAAGGTGAAACCAGGCCATACTATTGCAGCTGCCGGTTTTGGAGCAGGTCTGACTTGGGCGTCTACCATTTTCAGATGGGGTTGA

Protein Analysis

406

Amino Acids

42.79

Weight (kDa)

6.4

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1192
Acc16I TGCGCA 1 cut(s) 505
Acc36I ACCTGC 1 cut(s) 1169
AccI GTMKAC 2 cut(s) 562, 1196
AciI CCGC 7 cut(s) 174, 231, 371, 786, 923, 1019, 1131
AclI AACGTT 1 cut(s) 365
AclWI GGATC 3 cut(s) 94, 1003, 1016
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 1193
AfaI GTAC 1 cut(s) 243
AfeI AGCGCT 1 cut(s) 1090
AfiI CCNNNNNNNGG 3 cut(s) 436, 949, 1018
AflII CTTAAG 1 cut(s) 251
AflIII ACRYGT 1 cut(s) 665
AgsI TTSAA 6 cut(s) 72, 146, 261, 793, 878, 1062
AjnI CCWGG 1 cut(s) 1144
AjuI GAANNNNNNNTTGG 4 cut(s) 110, 142, 844, 876
AluBI AGCT 7 cut(s) 170, 199, 392, 536, 860, 1121, 1163
AluI AGCT 7 cut(s) 170, 199, 392, 536, 860, 1121, 1163
Alw21I GWGCWC 1 cut(s) 446
Alw26I GTCTC 1 cut(s) 962
Alw44I GTGCAC 1 cut(s) 442
AlwI GGATC 3 cut(s) 94, 1003, 1016
Aor51HI AGCGCT 1 cut(s) 1090
AoxI GGCC 3 cut(s) 3, 708, 1147
ApaLI GTGCAC 1 cut(s) 442
ApeKI GCWGC 7 cut(s) 213, 380, 501, 536, 686, 1160, 1163
AseI ATTAAT 1 cut(s) 701
AspA2I CCTAGG 1 cut(s) 838
AspLEI GCGC 4 cut(s) 152, 385, 506, 1091
AspS9I GGNCC 2 cut(s) 427, 651
AsuHPI GGTGA 5 cut(s) 183, 731, 773, 1066, 1150
AvaII GGWCC 2 cut(s) 427, 651
AvrII CCTAGG 1 cut(s) 838
AxyI CCTNAGG 2 cut(s) 105, 480
BaeGI GKGCMC 2 cut(s) 446, 478
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 1008
BauI CACGAG 1 cut(s) 1084
Bbv12I GWGCWC 1 cut(s) 446
BbvI GCAGC 7 cut(s) 200, 392, 488, 523, 673, 1150, 1172
BccI CCATC 7 cut(s) 394, 710, 722, 752, 999, 1051, 1203
BciT130I CCWGG 1 cut(s) 1146
BciVI GTATCC 1 cut(s) 761
BcoDI GTCTC 1 cut(s) 962
BfaI CTAG 2 cut(s) 839, 969
BfmI CTRYAG 1 cut(s) 36
BfoI RGCGCY 1 cut(s) 1092
BfrI CTTAAG 1 cut(s) 251
BfuAI ACCTGC 1 cut(s) 1169
BfuI GTATCC 1 cut(s) 761
BlnI CCTAGG 1 cut(s) 838
BlpI GCTNAGC 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 1146
Bme18I GGWCC 2 cut(s) 427, 651
BmgT120I GGNCC 2 cut(s) 427, 651
BmiI GGNNCC 2 cut(s) 1010, 1096
BmrFI CCNGG 1 cut(s) 1146
BmrI ACTGGG 2 cut(s) 240, 327
BmsI GCATC 6 cut(s) 23, 218, 616, 673, 974, 1006
BmuI ACTGGG 2 cut(s) 240, 327
BplI GAGNNNNNCTC 2 cut(s) 98, 130
BpmI CTGGAG 1 cut(s) 118
Bpu1102I GCTNAGC 1 cut(s) 235
BpuEI CTTGAG 1 cut(s) 416
BsaHI GRCGYC 1 cut(s) 1193
BsaI GGTCTC 1 cut(s) 962
BsaJI CCNNGG 1 cut(s) 838
Bsc4I CCNNNNNNNGG 3 cut(s) 436, 949, 1018
Bse118I RCCGGY 1 cut(s) 1166
Bse1I ACTGG 4 cut(s) 204, 246, 322, 653
Bse21I CCTNAGG 2 cut(s) 105, 480
BseBI CCWGG 1 cut(s) 1146
BseDI CCNNGG 1 cut(s) 838
BseGI GGATG 3 cut(s) 233, 688, 730
BseLI CCNNNNNNNGG 3 cut(s) 436, 949, 1018
BseMII CTCAG 2 cut(s) 96, 249
BseNI ACTGG 4 cut(s) 204, 246, 322, 653
BseRI GAGGAG 1 cut(s) 67
BseSI GKGCMC 2 cut(s) 446, 478
BseXI GCAGC 7 cut(s) 200, 392, 488, 523, 673, 1150, 1172
BseYI CCCAGC 1 cut(s) 689
Bsh1285I CGRYCG 1 cut(s) 375
BshFI GGCC 3 cut(s) 5, 710, 1149
BsiEI CGRYCG 1 cut(s) 375
BsiHKAI GWGCWC 1 cut(s) 446
BsiSI CCGG 1 cut(s) 1167
BslI CCNNNNNNNGG 3 cut(s) 436, 949, 1018
BsmAI GTCTC 1 cut(s) 962
BsnI GGCC 3 cut(s) 5, 710, 1149
Bso31I GGTCTC 1 cut(s) 962
Bsp1286I GDGCHC 2 cut(s) 446, 478
Bsp143I GATC 4 cut(s) 86, 188, 268, 1008
Bsp1720I GCTNAGC 1 cut(s) 235
BspACI CCGC 7 cut(s) 174, 231, 371, 786, 923, 1019, 1131
BspANI GGCC 3 cut(s) 5, 710, 1149
BspCNI CTCAG 2 cut(s) 97, 248
BspLI GGNNCC 2 cut(s) 1010, 1096
BspMI ACCTGC 1 cut(s) 1169
BspPI GGATC 3 cut(s) 94, 1003, 1016
BspTI CTTAAG 1 cut(s) 251
BspTNI GGTCTC 1 cut(s) 962
BsrFI RCCGGY 1 cut(s) 1166
BsrI ACTGG 4 cut(s) 204, 246, 322, 653
BssAI RCCGGY 1 cut(s) 1166
BssECI CCNNGG 1 cut(s) 838
BssMI GATC 4 cut(s) 86, 188, 268, 1008
BssNI GRCGYC 1 cut(s) 1193
BssSI CACGAG 1 cut(s) 1084
BssT1I CCWWGG 1 cut(s) 838
Bst2BI CACGAG 1 cut(s) 1084
Bst2UI CCWGG 1 cut(s) 1146
Bst4CI ACNGT 2 cut(s) 40, 1104
BstACI GRCGYC 1 cut(s) 1193
BstAFI CTTAAG 1 cut(s) 251
BstC8I GCNNGC 4 cut(s) 201, 708, 712, 1034
BstDEI CTNAG 3 cut(s) 105, 235, 480
BstENI CCTNNNNNAGG 1 cut(s) 947
BstF5I GGATG 3 cut(s) 233, 688, 730
BstH2I RGCGCY 1 cut(s) 1092
BstHHI GCGC 4 cut(s) 152, 385, 506, 1091
BstKTI GATC 4 cut(s) 89, 191, 271, 1011
BstMAI GTCTC 1 cut(s) 962
BstMBI GATC 4 cut(s) 86, 188, 268, 1008
BstMCI CGRYCG 1 cut(s) 375
BstMWI GCNNNNNNNGC 7 cut(s) 11, 354, 377, 389, 692, 919, 1086
BstNI CCWGG 1 cut(s) 1146
BstNSI RCATGY 2 cut(s) 164, 1036
BstSCI CCNGG 1 cut(s) 1144
BstSFI CTRYAG 1 cut(s) 36
BstSLI GKGCMC 2 cut(s) 446, 478
BstV1I GCAGC 7 cut(s) 200, 392, 488, 523, 673, 1150, 1172
BstX2I RGATCY 2 cut(s) 86, 1008
BstXI CCANNNNNNTGG 1 cut(s) 1105
BstYI RGATCY 2 cut(s) 86, 1008
Bsu36I CCTNAGG 2 cut(s) 105, 480
BsuI GTATCC 1 cut(s) 761
BsuRI GGCC 3 cut(s) 5, 710, 1149
BtgZI GCGATG 1 cut(s) 729
BtsCI GGATG 3 cut(s) 233, 688, 730
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 2 cut(s) 27, 315
BveI ACCTGC 1 cut(s) 1169
Cac8I GCNNGC 4 cut(s) 201, 708, 712, 1034
CfoI GCGC 4 cut(s) 152, 385, 506, 1091
Cfr10I RCCGGY 1 cut(s) 1166
Cfr13I GGNCC 2 cut(s) 427, 651
CseI GACGC 2 cut(s) 561, 1182
Csp6I GTAC 1 cut(s) 242
CviAII CATG 2 cut(s) 161, 1033
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 3 cut(s) 105, 235, 480
DpnI GATC 4 cut(s) 88, 190, 270, 1010
DpnII GATC 4 cut(s) 86, 188, 268, 1008
DraI TTTAAA 1 cut(s) 601
DrdI GACNNNNNNGTC 1 cut(s) 1192
DseDI GACNNNNNNGTC 1 cut(s) 1192
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 838
Eco147I AGGCCT 1 cut(s) 710
Eco31I GGTCTC 1 cut(s) 962
Eco32I GATATC 2 cut(s) 306, 463
Eco47I GGWCC 2 cut(s) 427, 651
Eco47III AGCGCT 1 cut(s) 1090
Eco81I CCTNAGG 2 cut(s) 105, 480
EcoNI CCTNNNNNAGG 1 cut(s) 947
EcoRII CCWGG 1 cut(s) 1144
EcoRV GATATC 2 cut(s) 306, 463
EcoT14I CCWWGG 1 cut(s) 838
EcoT22I ATGCAT 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 838
FaeI CATG 2 cut(s) 164, 1036
FalI AAGNNNNNCTT 4 cut(s) 499, 531, 844, 876
FatI CATG 2 cut(s) 160, 1032
FauI CCCGC 1 cut(s) 1124
FblI GTMKAC 2 cut(s) 562, 1196
FokI GGATG 3 cut(s) 240, 695, 737
FspBI CTAG 2 cut(s) 839, 969
FspI TGCGCA 1 cut(s) 505
GlaI GCGC 4 cut(s) 151, 384, 505, 1090
GsaI CCCAGC 1 cut(s) 693
GsuI CTGGAG 1 cut(s) 118
HaeII RGCGCY 1 cut(s) 1092
HaeIII GGCC 3 cut(s) 5, 710, 1149
HapII CCGG 1 cut(s) 1167
HgaI GACGC 2 cut(s) 561, 1182
HhaI GCGC 4 cut(s) 152, 385, 506, 1091
Hin1I GRCGYC 1 cut(s) 1193
Hin1II CATG 2 cut(s) 164, 1036
Hin6I GCGC 4 cut(s) 150, 383, 504, 1089
HinP1I GCGC 4 cut(s) 150, 383, 504, 1089
HincII GTYRAC 1 cut(s) 646
HindII GTYRAC 1 cut(s) 646
HindIII AAGCTT 2 cut(s) 197, 858
HinfI GANTC 5 cut(s) 61, 111, 182, 322, 511
HpaII CCGG 1 cut(s) 1167
HphI GGTGA 5 cut(s) 183, 731, 773, 1066, 1150
Hpy166II GTNNAC 5 cut(s) 427, 444, 563, 646, 1197
Hpy188I TCNGA 7 cut(s) 45, 181, 489, 639, 1048, 1185, 1208
Hpy188III TCNNGA 2 cut(s) 186, 395
Hpy8I GTNNAC 5 cut(s) 427, 444, 563, 646, 1197
Hpy99I CGWCG 1 cut(s) 336
HpyAV CCTTC 5 cut(s) 78, 140, 758, 884, 1129
HpyCH4III ACNGT 2 cut(s) 40, 1104
HpyCH4IV ACGT 2 cut(s) 365, 665
HpyCH4V TGCA 9 cut(s) 14, 216, 444, 706, 751, 947, 965, 1036, 1160
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 354, 377, 389, 692, 919, 1086
HpyF3I CTNAG 3 cut(s) 105, 235, 480
HpySE526I ACGT 2 cut(s) 365, 665
Hsp92I GRCGYC 1 cut(s) 1193
Hsp92II CATG 2 cut(s) 164, 1036
HspAI GCGC 4 cut(s) 150, 383, 504, 1089
Kzo9I GATC 4 cut(s) 86, 188, 268, 1008
LmnI GCTCC 5 cut(s) 37, 137, 167, 993, 1175
Lsp1109I GCAGC 7 cut(s) 200, 392, 488, 523, 673, 1150, 1172
LweI GCATC 6 cut(s) 23, 218, 616, 673, 974, 1006
MaeI CTAG 2 cut(s) 839, 969
MaeII ACGT 2 cut(s) 365, 665
MaeIII GTNAC 1 cut(s) 981
MalI GATC 4 cut(s) 88, 190, 270, 1010
MboI GATC 4 cut(s) 86, 188, 268, 1008
MboII GAAGA 2 cut(s) 16, 70
MfeI CAATTG 1 cut(s) 930
MflI RGATCY 2 cut(s) 86, 1008
MhlI GDGCHC 2 cut(s) 446, 478
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 222, 930
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 145
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 16
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 221, 252, 585, 600, 701
MslI CAYNNNNRTG 1 cut(s) 756
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 536, 1163
MspCI CTTAAG 1 cut(s) 251
MspI CCGG 1 cut(s) 1167
MspR9I CCNGG 1 cut(s) 1146
MunI CAATTG 1 cut(s) 930
MvaI CCWGG 1 cut(s) 1146
MwoI GCNNNNNNNGC 7 cut(s) 11, 354, 377, 389, 692, 919, 1086
NdeII GATC 4 cut(s) 86, 188, 268, 1008
NlaIII CATG 2 cut(s) 164, 1036
NlaIV GGNNCC 2 cut(s) 1010, 1096
NmeAIII GCCGAG 1 cut(s) 477
NsbI TGCGCA 1 cut(s) 505
NsiI ATGCAT 1 cut(s) 16
NspI RCATGY 2 cut(s) 164, 1036
PaeI GCATGC 1 cut(s) 1036
PceI AGGCCT 1 cut(s) 710
PcsI WCGNNNNNNNCGW 1 cut(s) 331
PfeI GAWTC 5 cut(s) 61, 111, 182, 322, 511
PshBI ATTAAT 1 cut(s) 701
Psp1406I AACGTT 1 cut(s) 365
Psp6I CCWGG 1 cut(s) 1144
PspFI CCCAGC 1 cut(s) 689
PspGI CCWGG 1 cut(s) 1144
PspN4I GGNNCC 2 cut(s) 1010, 1096
PspPI GGNCC 2 cut(s) 427, 651
PsuI RGATCY 2 cut(s) 86, 1008
PvuII CAGCTG 2 cut(s) 536, 1163
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 756
SaqAI TTAA 5 cut(s) 221, 252, 585, 600, 701
Sau3AI GATC 4 cut(s) 86, 188, 268, 1008
Sau96I GGNCC 2 cut(s) 427, 651
ScrFI CCNGG 1 cut(s) 1146
SduI GDGCHC 2 cut(s) 446, 478
SfaNI GCATC 6 cut(s) 23, 218, 616, 673, 974, 1006
SfcI CTRYAG 1 cut(s) 36
SinI GGWCC 2 cut(s) 427, 651
SmiMI CAYNNNNRTG 1 cut(s) 756
SmlI CTYRAG 2 cut(s) 251, 395
SmoI CTYRAG 2 cut(s) 251, 395
SphI GCATGC 1 cut(s) 1036
Sse9I AATT 2 cut(s) 222, 930
SseBI AGGCCT 1 cut(s) 710
SsiI CCGC 7 cut(s) 174, 231, 371, 786, 923, 1019, 1131
SspMI CTAG 2 cut(s) 839, 969
StuI AGGCCT 1 cut(s) 710
StyD4I CCNGG 1 cut(s) 1144
StyI CCWWGG 1 cut(s) 838
TaaI ACNGT 2 cut(s) 40, 1104
TaiI ACGT 2 cut(s) 368, 668
TaqI TCGA 3 cut(s) 187, 331, 375
TaqII GACCGA 1 cut(s) 668
TasI AATT 2 cut(s) 222, 930
TauI GCSGC 3 cut(s) 234, 788, 925
TfiI GAWTC 5 cut(s) 61, 111, 182, 322, 511
Tru1I TTAA 5 cut(s) 221, 252, 585, 600, 701
Tru9I TTAA 5 cut(s) 221, 252, 585, 600, 701
TscAI CASTG 2 cut(s) 34, 322
TseI GCWGC 7 cut(s) 213, 380, 501, 536, 686, 1160, 1163
TspDTI ATGAA 4 cut(s) 312, 816, 852, 896
TspGWI ACGGA 1 cut(s) 298
TspRI CASTG 2 cut(s) 34, 322
Vha464I CTTAAG 1 cut(s) 251
VneI GTGCAC 1 cut(s) 442
VpaK11BI GGWCC 2 cut(s) 427, 651
VspI ATTAAT 1 cut(s) 701
XagI CCTNNNNNAGG 1 cut(s) 947
XceI RCATGY 2 cut(s) 164, 1036
XmaJI CCTAGG 1 cut(s) 838
XmiI GTMKAC 2 cut(s) 562, 1196
XspI CTAG 2 cut(s) 839, 969
Zsp2I ATGCAT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.