Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0004673

Physical Location & Seq

Genomic Coordinates Reverse (-)

12325597 .. 12329619

Gene Structure 4023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1085000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCAACCAATGCATCTGGGTTCTTCACTGCTCCTACAGTTCCGACCCTGAGGAGGAAGATTCAACCTTCAATACGCATTTTTGGATCTGGGTTCCGTTCCCCAGAGGGAATCTCCGAGAGGGTATTCTGCTCCAGAATTTTTGAAGGCGCAGAGAAGCATGTTGGAGCCGCTTCTGAATCTCGAGCATCCAAAAAGCTTCTTGATGTGCATTTAGCTTGTCACTGCAAGTTAATTGGATGCGGCTCAGCAATACCCAGTCTTAAGATTTCAAATGACGATCTCGTAAAAGTAGTAGATACTAACGATGAATGGATAGCTGTTCGCACTAGGATTCAAAATCGACGTGTTCTTTCAGGCAAAGAGAGCCTGACAACGTTAGCAGTTGAGGCAGCGCATAAAGCACTTGAGATGGCACAGGTTGATGTTGATGATGTGGACCTAATCTTGATGTGCACATCTACGCCTGATGATGTCTTTGGCTGTGCTCCTCAGGTTCAGAAAGCACTTGGCTGCCGAAGGAACCCTTTAGCTTATGATATTACAGCTGCTTGTAGCAGATTTATTTTGGGTCTCGTATCAGCTTCTTGTCACATTAAAGCTGGTGGAATTAAAAATGTTCGAGTTATTGGGGCTGATGCTATTTCTCGGATTGTCGACTGGACCAATAGAGGAACATGTATTCTCTTCGGGGATTCTGTATTAGTTCAGGATGATGCTTTGCTTTCTTTTGATGTGCATAGTGATGGTGAAGGAAACAGACATCTCACTGTTACCTTCGAAGGAAATGAAACAGATGATGAGTTGGGTTCTAATGGCTCAGTCCTAGGCTTCCCTCCAAGACCCTCTTCATATTCCTGCCTTCAAATGAATGGTAAAGAGGTCTTTCGCTTTGCAGTGTGTGCTGTGCCAGAGTCACTTGAGTCTTCTCTTGCAAAAGCCGGTCTCCCTCTATCTAGCATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko01100 ko01212 map00061 map01100 map01212

Pfam Domains

Protein Families

ACP_syn_III ACP_syn_III_C

Protein Analysis

323

Amino Acids

34.54

Weight (kDa)

6.01

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACP_syn_III	PF08545	179 - 250	1.2e-16	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62640 AT1G62640
fragaria_vesca	FvH4_5g00250
malus_domestica	MD04G1085000.v1.1 MD06G1063300.v1.1 MD06G1063400.v1.1 MD08G1135900.v1.1 MD09G1022600.v1.1 MD12G1033000.v1.1
prunus_persica	Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1
pyrus_communis	pycom04g07590 pycom06g06010 pycom08g11500
rosa_chinensis	RchiOBHm_Chr7g0202391
rosa_laevigata	RLG00000003604
rosa_multiflora	Rmu_co8440841.1_g000001 Rmu_sc0000266.1_g000012
rosa_roxburghii	Rroxscaffold_3G00254630
rosa_rugosa	Rorug07G0070200 Rorug07G0070300
rosa_samantha	Rh7AG197800 Rh7BG198800 Rh7CG208800 Rh7DG204500
rosa_wichuraiana	Rw7G017340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	657
AciI	CCGC	2 cut(s)	171, 243
AclI	AACGTT	1 cut(s)	377
AclWI	GGATC	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	138
AfiI	CCNNNNNNNGG	1 cut(s)	54
AflII	CTTAAG	1 cut(s)	263
AflIII	ACRYGT	2 cut(s)	346, 677
AgsI	TTSAA	6 cut(s)	65, 72, 146, 273, 338, 866
AjiI	CACGTC	1 cut(s)	347
AjuI	GAANNNNNNNTTGG	2 cut(s)	832, 864
AluBI	AGCT	7 cut(s)	199, 218, 320, 533, 548, 584, 602
AluI	AGCT	7 cut(s)	199, 218, 320, 533, 548, 584, 602
Alw21I	GWGCWC	2 cut(s)	458, 490
Alw26I	GTCTC	2 cut(s)	578, 950
Alw44I	GTGCAC	1 cut(s)	454
AlwI	GGATC	1 cut(s)	94
Ama87I	CYCGRG	1 cut(s)	183
ApaLI	GTGCAC	1 cut(s)	454
ApeKI	GCWGC	3 cut(s)	392, 513, 548
ApoI	RAATTY	1 cut(s)	138
AspA2I	CCTAGG	1 cut(s)	826
AspLEI	GCGC	2 cut(s)	152, 397
AspS9I	GGNCC	2 cut(s)	439, 663
AsuHPI	GGTGA	1 cut(s)	761
AsuII	TTCGAA	1 cut(s)	780
AvaI	CYCGRG	1 cut(s)	183
AvaII	GGWCC	2 cut(s)	439, 663
AvrII	CCTAGG	1 cut(s)	826
AxyI	CCTNAGG	2 cut(s)	50, 492
BaeGI	GKGCMC	1 cut(s)	458
BbsI	GAAGAC	1 cut(s)	918
Bbv12I	GWGCWC	2 cut(s)	458, 490
BbvI	GCAGC	3 cut(s)	404, 500, 535
BccI	CCATC	2 cut(s)	406, 740
BcoDI	GTCTC	2 cut(s)	578, 950
BfaI	CTAG	3 cut(s)	330, 827, 957
BfmI	CTRYAG	1 cut(s)	36
BfrI	CTTAAG	1 cut(s)	263
BisI	GCNGC	5 cut(s)	171, 244, 393, 514, 549
BlnI	CCTAGG	1 cut(s)	826
BlpI	GCTNAGC	1 cut(s)	247
BlsI	GCNGC	5 cut(s)	172, 245, 394, 515, 550
Bme18I	GGWCC	2 cut(s)	439, 663
BmeT110I	CYCGRG	1 cut(s)	183
BmgBI	CACGTC	1 cut(s)	347
BmgT120I	GGNCC	2 cut(s)	439, 663
BmiI	GGNNCC	3 cut(s)	95, 169, 524
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	5 cut(s)	23, 197, 230, 628, 706
BmuI	ACTGGG	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	918
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
BpmI	CTGGAG	1 cut(s)	118
Bpu1102I	GCTNAGC	1 cut(s)	247
Bpu14I	TTCGAA	1 cut(s)	780
BpuEI	CTTGAG	2 cut(s)	428, 941
BsaI	GGTCTC	2 cut(s)	578, 950
BsaJI	CCNNGG	1 cut(s)	826
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse118I	RCCGGY	1 cut(s)	941
Bse1I	ACTGG	2 cut(s)	258, 665
Bse21I	CCTNAGG	2 cut(s)	50, 492
BseDI	CCNNGG	1 cut(s)	826
BseGI	GGATG	3 cut(s)	188, 245, 718
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMII	CTCAG	4 cut(s)	41, 261, 506, 834
BseNI	ACTGG	2 cut(s)	258, 665
BseRI	GAGGAG	2 cut(s)	67, 480
BseSI	GKGCMC	1 cut(s)	458
BseXI	GCAGC	3 cut(s)	404, 500, 535
BsiHKAI	GWGCWC	2 cut(s)	458, 490
BsiHKCI	CYCGRG	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	942
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	2 cut(s)	578, 950
Bso31I	GGTCTC	2 cut(s)	578, 950
BsoBI	CYCGRG	1 cut(s)	183
Bsp119I	TTCGAA	1 cut(s)	780
Bsp1286I	GDGCHC	2 cut(s)	458, 490
Bsp143I	GATC	2 cut(s)	86, 280
Bsp1720I	GCTNAGC	1 cut(s)	247
BspACI	CCGC	2 cut(s)	171, 243
BspCNI	CTCAG	4 cut(s)	42, 260, 505, 833
BspLI	GGNNCC	3 cut(s)	95, 169, 524
BspPI	GGATC	1 cut(s)	94
BspT104I	TTCGAA	1 cut(s)	780
BspTI	CTTAAG	1 cut(s)	263
BspTNI	GGTCTC	2 cut(s)	578, 950
BsrFI	RCCGGY	1 cut(s)	941
BsrI	ACTGG	2 cut(s)	258, 665
BssAI	RCCGGY	1 cut(s)	941
BssECI	CCNNGG	1 cut(s)	826
BssMI	GATC	2 cut(s)	86, 280
BssT1I	CCWWGG	1 cut(s)	826
Bst4CI	ACNGT	2 cut(s)	40, 772
Bst6I	CTCTTC	2 cut(s)	692, 853
BstAFI	CTTAAG	1 cut(s)	263
BstAPI	GCANNNNNTGC	2 cut(s)	11, 902
BstBI	TTCGAA	1 cut(s)	780
BstDEI	CTNAG	4 cut(s)	50, 247, 492, 820
BstF5I	GGATG	3 cut(s)	188, 245, 718
BstHHI	GCGC	2 cut(s)	152, 397
BstKTI	GATC	2 cut(s)	89, 283
BstMAI	GTCTC	2 cut(s)	578, 950
BstMBI	GATC	2 cut(s)	86, 280
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 366, 389, 401, 902
BstNSI	RCATGY	2 cut(s)	164, 681
BstSFI	CTRYAG	1 cut(s)	36
BstSLI	GKGCMC	1 cut(s)	458
BstV1I	GCAGC	3 cut(s)	404, 500, 535
BstV2I	GAAGAC	1 cut(s)	918
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
Bsu36I	CCTNAGG	2 cut(s)	50, 492
BtrI	CACGTC	1 cut(s)	347
BtsCI	GGATG	3 cut(s)	188, 245, 718
BtsI	GCAGTG	3 cut(s)	27, 223, 903
BtsIMutI	CAGTG	4 cut(s)	27, 223, 768, 903
CfoI	GCGC	2 cut(s)	152, 397
Cfr10I	RCCGGY	1 cut(s)	941
Cfr13I	GGNCC	2 cut(s)	439, 663
CviAII	CATG	2 cut(s)	161, 678
DdeI	CTNAG	4 cut(s)	50, 247, 492, 820
DpnI	GATC	2 cut(s)	88, 282
DpnII	GATC	2 cut(s)	86, 280
Eam1104I	CTCTTC	2 cut(s)	692, 853
EarI	CTCTTC	2 cut(s)	692, 853
Eco130I	CCWWGG	1 cut(s)	826
Eco31I	GGTCTC	2 cut(s)	578, 950
Eco47I	GGWCC	2 cut(s)	439, 663
Eco81I	CCTNAGG	2 cut(s)	50, 492
Eco88I	CYCGRG	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	826
EcoT22I	ATGCAT	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	826
FaeI	CATG	2 cut(s)	164, 681
FaiI	YATR	6 cut(s)	162, 399, 537, 679, 741, 853
FalI	AAGNNNNNCTT	4 cut(s)	511, 543, 832, 864
FatI	CATG	2 cut(s)	160, 677
FblI	GTMKAC	1 cut(s)	657
Fnu4HI	GCNGC	5 cut(s)	171, 244, 393, 514, 549
FokI	GGATG	3 cut(s)	175, 252, 725
Fsp4HI	GCNGC	5 cut(s)	171, 244, 393, 514, 549
FspBI	CTAG	3 cut(s)	330, 827, 957
GlaI	GCGC	2 cut(s)	151, 396
GluI	GCNGC	5 cut(s)	171, 244, 393, 514, 549
GsuI	CTGGAG	1 cut(s)	118
HapII	CCGG	1 cut(s)	942
HhaI	GCGC	2 cut(s)	152, 397
Hin1II	CATG	2 cut(s)	164, 681
Hin6I	GCGC	2 cut(s)	150, 395
HinP1I	GCGC	2 cut(s)	150, 395
HincII	GTYRAC	1 cut(s)	658
HindII	GTYRAC	1 cut(s)	658
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	7 cut(s)	61, 111, 179, 334, 695, 914, 923
HpaII	CCGG	1 cut(s)	942
HphI	GGTGA	1 cut(s)	761
Hpy166II	GTNNAC	3 cut(s)	439, 456, 658
Hpy188I	TCNGA	5 cut(s)	45, 118, 178, 501, 651
Hpy188III	TCNNGA	5 cut(s)	135, 183, 203, 448, 710
Hpy8I	GTNNAC	3 cut(s)	439, 456, 658
Hpy99I	CGWCG	1 cut(s)	348
HpyAV	CCTTC	7 cut(s)	78, 140, 513, 746, 776, 787, 872
HpyCH4III	ACNGT	2 cut(s)	40, 772
HpyCH4IV	ACGT	2 cut(s)	346, 377
HpyCH4V	TGCA	7 cut(s)	14, 211, 228, 456, 739, 896, 935
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 366, 389, 401, 902
HpyF3I	CTNAG	4 cut(s)	50, 247, 492, 820
HpySE526I	ACGT	2 cut(s)	346, 377
Hsp92II	CATG	2 cut(s)	164, 681
HspAI	GCGC	2 cut(s)	150, 395
Kzo9I	GATC	2 cut(s)	86, 280
LmnI	GCTCC	4 cut(s)	37, 137, 167, 493
Lsp1109I	GCAGC	3 cut(s)	404, 500, 535
LweI	GCATC	5 cut(s)	23, 197, 230, 628, 706
MaeI	CTAG	3 cut(s)	330, 827, 957
MaeII	ACGT	2 cut(s)	346, 377
MaeIII	GTNAC	4 cut(s)	221, 590, 772, 915
MalI	GATC	2 cut(s)	88, 282
MboI	GATC	2 cut(s)	86, 280
MboII	GAAGA	5 cut(s)	16, 70, 679, 840, 918
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	2 cut(s)	458, 490
MluCI	AATT	3 cut(s)	138, 234, 609
MlyI	GAGTC	2 cut(s)	923, 932
MmeI	TCCRAC	2 cut(s)	68, 145
Mph1103I	ATGCAT	1 cut(s)	16
MseI	TTAA	4 cut(s)	233, 264, 597, 612
MslI	CAYNNNNRTG	1 cut(s)	744
MspA1I	CMGCKG	1 cut(s)	548
MspCI	CTTAAG	1 cut(s)	263
MspI	CCGG	1 cut(s)	942
MwoI	GCNNNNNNNGC	5 cut(s)	11, 366, 389, 401, 902
NdeII	GATC	2 cut(s)	86, 280
NlaIII	CATG	2 cut(s)	164, 681
NlaIV	GGNNCC	3 cut(s)	95, 169, 524
NmuCI	GTSAC	3 cut(s)	221, 590, 915
NsiI	ATGCAT	1 cut(s)	16
NspI	RCATGY	2 cut(s)	164, 681
NspV	TTCGAA	1 cut(s)	780
PaeR7I	CTCGAG	1 cut(s)	183
PciI	ACATGT	1 cut(s)	677
PfeI	GAWTC	5 cut(s)	61, 111, 179, 334, 695
PkrI	GCNGC	5 cut(s)	172, 245, 394, 515, 550
PleI	GAGTC	2 cut(s)	922, 931
PpsI	GAGTC	2 cut(s)	922, 931
PscI	ACATGT	1 cut(s)	677
Psp1406I	AACGTT	1 cut(s)	377
PspN4I	GGNNCC	3 cut(s)	95, 169, 524
PspPI	GGNCC	2 cut(s)	439, 663
PsuI	RGATCY	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	548
RseI	CAYNNNNRTG	1 cut(s)	744
SalI	GTCGAC	1 cut(s)	656
SaqAI	TTAA	4 cut(s)	233, 264, 597, 612
SatI	GCNGC	5 cut(s)	171, 244, 393, 514, 549
Sau3AI	GATC	2 cut(s)	86, 280
Sau96I	GGNCC	2 cut(s)	439, 663
SchI	GAGTC	2 cut(s)	923, 932
SduI	GDGCHC	2 cut(s)	458, 490
SfaNI	GCATC	5 cut(s)	23, 197, 230, 628, 706
SfcI	CTRYAG	1 cut(s)	36
Sfr274I	CTCGAG	1 cut(s)	183
SfuI	TTCGAA	1 cut(s)	780
SinI	GGWCC	2 cut(s)	439, 663
SlaI	CTCGAG	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	744
SmlI	CTYRAG	4 cut(s)	183, 263, 407, 920
SmoI	CTYRAG	4 cut(s)	183, 263, 407, 920
Sse9I	AATT	3 cut(s)	138, 234, 609
SsiI	CCGC	2 cut(s)	171, 243
SspMI	CTAG	3 cut(s)	330, 827, 957
StyI	CCWWGG	1 cut(s)	826
TaaI	ACNGT	2 cut(s)	40, 772
TaiI	ACGT	2 cut(s)	349, 380
TaqI	TCGA	5 cut(s)	184, 343, 622, 657, 780
TasI	AATT	3 cut(s)	138, 234, 609
TauI	GCSGC	2 cut(s)	173, 246
TfiI	GAWTC	5 cut(s)	61, 111, 179, 334, 695
Tru1I	TTAA	4 cut(s)	233, 264, 597, 612
Tru9I	TTAA	4 cut(s)	233, 264, 597, 612
TscAI	CASTG	4 cut(s)	34, 230, 775, 903
TseFI	GTSAC	3 cut(s)	221, 590, 915
TseI	GCWGC	3 cut(s)	392, 513, 548
Tsp45I	GTSAC	3 cut(s)	221, 590, 915
TspDTI	ATGAA	4 cut(s)	324, 804, 840, 884
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	4 cut(s)	34, 230, 775, 903
Vha464I	CTTAAG	1 cut(s)	263
VneI	GTGCAC	1 cut(s)	454
VpaK11BI	GGWCC	2 cut(s)	439, 663
XapI	RAATTY	1 cut(s)	138
XceI	RCATGY	2 cut(s)	164, 681
XhoI	CTCGAG	1 cut(s)	183
XmaJI	CCTAGG	1 cut(s)	826
XmiI	GTMKAC	1 cut(s)	657
XspI	CTAG	3 cut(s)	330, 827, 957
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.