Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0004673

Physical Location & Seq

Genomic Coordinates Forward (+)

10936607 .. 10940439

Gene Structure 3833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1063300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGCCACCAATGCATCTAGGTTCTTCACTGCTCCTACAGTTCCGAGCCAGAGGAGGAAGATTCAGCCTTCAATACGCATTTTTGGATCTGGGTTTCGTTCCCCTGAGGAATCTCCAAGAGGGTATTCTGCTCCAGCACTTTTGAAGGCGCAGAGAAGCATGTTGGAGCTTCCGCTTTTGAATCTCGATCACCCAAGCTTGTCAATAAAGGCTGCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko01100 ko01212 map00061 map01100 map01212

Pfam Domains

Protein Families

ACP_syn_III ACP_syn_III_C

Protein Analysis

74

Amino Acids

8.0

Weight (kDa)

11.31

Isoelectric Point (pI)

72.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62640 AT1G62640
fragaria_vesca	FvH4_5g00250
malus_domestica	MD04G1085000.v1.1 MD06G1063300.v1.1 MD06G1063400.v1.1 MD08G1135900.v1.1 MD09G1022600.v1.1 MD12G1033000.v1.1
prunus_persica	Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1
pyrus_communis	pycom04g07590 pycom06g06010 pycom08g11500
rosa_chinensis	RchiOBHm_Chr7g0202391
rosa_laevigata	RLG00000003604
rosa_multiflora	Rmu_co8440841.1_g000001 Rmu_sc0000266.1_g000012
rosa_roxburghii	Rroxscaffold_3G00254630
rosa_rugosa	Rorug07G0070200 Rorug07G0070300
rosa_samantha	Rh7AG197800 Rh7BG198800 Rh7CG208800 Rh7DG204500
rosa_wichuraiana	Rw7G017340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	173
AclWI	GGATC	1 cut(s)	94
AcoI	YGGCCR	1 cut(s)	3
AgsI	TTSAA	3 cut(s)	72, 145, 181
AjuI	GAANNNNNNNTTGG	2 cut(s)	109, 141
AluBI	AGCT	2 cut(s)	169, 198
AluI	AGCT	2 cut(s)	169, 198
AlwI	GGATC	1 cut(s)	94
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	151
AsuHPI	GGTGA	1 cut(s)	182
AxyI	CCTNAGG	1 cut(s)	105
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	199
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	36
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
BmsI	GCATC	1 cut(s)	23
BpmI	CTGGAG	1 cut(s)	117
Bse21I	CCTNAGG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	96
BseRI	GAGGAG	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	199
BshFI	GGCC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	86, 187
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	97
BspPI	GGATC	1 cut(s)	94
BssMI	GATC	2 cut(s)	86, 187
Bst4CI	ACNGT	1 cut(s)	40
BstDEI	CTNAG	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	2 cut(s)	89, 190
BstMBI	GATC	2 cut(s)	86, 187
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	163
BstSFI	CTRYAG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	199
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
Bsu36I	CCTNAGG	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	27
CfoI	GCGC	1 cut(s)	151
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	6 cut(s)	5, 48, 67, 169, 198, 212
CviKI_1	RGCY	6 cut(s)	5, 48, 67, 169, 198, 212
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	2 cut(s)	88, 189
DpnII	GATC	2 cut(s)	86, 187
EaeI	YGGCCR	1 cut(s)	3
Eco81I	CCTNAGG	1 cut(s)	105
EcoT22I	ATGCAT	1 cut(s)	16
FaeI	CATG	1 cut(s)	163
FaiI	YATR	1 cut(s)	161
FatI	CATG	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	213
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	1 cut(s)	18
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	1 cut(s)	163
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HindIII	AAGCTT	1 cut(s)	196
HinfI	GANTC	3 cut(s)	61, 110, 181
HphI	GGTGA	1 cut(s)	182
Hpy188I	TCNGA	1 cut(s)	45
Hpy188III	TCNNGA	1 cut(s)	185
HpyAV	CCTTC	2 cut(s)	78, 139
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	2 cut(s)	14, 215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	105
Hsp92II	CATG	1 cut(s)	163
HspAI	GCGC	1 cut(s)	149
Kzo9I	GATC	2 cut(s)	86, 187
LmnI	GCTCC	3 cut(s)	37, 136, 166
LpnPI	CCDG	4 cut(s)	62, 75, 117, 147
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	18
MalI	GATC	2 cut(s)	88, 189
MboI	GATC	2 cut(s)	86, 187
MboII	GAAGA	2 cut(s)	16, 70
MflI	RGATCY	1 cut(s)	86
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	4 cut(s)	45, 48, 100, 113
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	16
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	220
Msp20I	TGGCCA	1 cut(s)	5
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	2 cut(s)	86, 187
NlaIII	CATG	1 cut(s)	163
NsiI	ATGCAT	1 cut(s)	16
NspI	RCATGY	1 cut(s)	163
PfeI	GAWTC	3 cut(s)	61, 110, 181
PkrI	GCNGC	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	220
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	2 cut(s)	86, 187
SetI	ASST	3 cut(s)	23, 171, 200
SfaNI	GCATC	1 cut(s)	23
SfcI	CTRYAG	1 cut(s)	36
SsiI	CCGC	1 cut(s)	173
SspMI	CTAG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	186
TfiI	GAWTC	3 cut(s)	61, 110, 181
Tru1I	TTAA	1 cut(s)	220
Tru9I	TTAA	1 cut(s)	220
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	1 cut(s)	212
TspRI	CASTG	1 cut(s)	34
XceI	RCATGY	1 cut(s)	163
XspI	CTAG	1 cut(s)	18
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.