Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0004673

Physical Location & Seq

Genomic Coordinates Reverse (-)

8307588 .. 8310455

Gene Structure 2868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g07590.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCTTCTGGTTTTCAAATATTACCTGAATTCAATCTCAATGGGGCTCTGGATTTTTTTTTTTTTTGGGTCTGAAATTTTGCTTTTTCCGACCCCGAGGAGGAAGATTCAACCTTCAATACGCATTTTTGGATCTGGGTTCCGTTCCCCAGAGGTAATCTCCAAGAGGGTATTCAGCTCCAGCATTTTTGAAGGCGCAGAGAAGCATGTTGGAGCATCCGCTTCTGAATCTCGAGCACCAAGCAAAGAGAGCCTGACAACGTTAGCAGTTGAGGCAGCGCATAAAGCACTTGAGATGGCACAGGTTGATGTTGATGATGTGGACCTAATCTTGATGTGCACATCTACGCCTGATGATGTCTTTGGCTGTGCTTCTCAGTTCAGAAAGCACTTGGCTGCCGAAGGAACCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko01100 ko01212 map00061 map01100 map01212

Pfam Domains

Protein Families

ACP_syn_III ACP_syn_III_C

Protein Analysis

138

Amino Acids

15.14

Weight (kDa)

6.28

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62640 AT1G62640
fragaria_vesca	FvH4_5g00250
malus_domestica	MD04G1085000.v1.1 MD06G1063300.v1.1 MD06G1063400.v1.1 MD08G1135900.v1.1 MD09G1022600.v1.1 MD12G1033000.v1.1
prunus_persica	Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1 Prupe.5G075100_v2.0.a1
pyrus_communis	pycom04g07590 pycom06g06010 pycom08g11500
rosa_chinensis	RchiOBHm_Chr7g0202391
rosa_laevigata	RLG00000003604
rosa_multiflora	Rmu_co8440841.1_g000001 Rmu_sc0000266.1_g000012
rosa_roxburghii	Rroxscaffold_3G00254630
rosa_rugosa	Rorug07G0070200 Rorug07G0070300
rosa_samantha	Rh7AG197800 Rh7BG198800 Rh7CG208800 Rh7DG204500
rosa_wichuraiana	Rw7G017340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	219
AclI	AACGTT	1 cut(s)	260
AclWI	GGATC	1 cut(s)	139
AcsI	RAATTY	2 cut(s)	28, 75
AfiI	CCNNNNNNNGG	1 cut(s)	99
AgsI	TTSAA	5 cut(s)	16, 33, 110, 117, 191
AjuI	GAANNNNNNNTTGG	2 cut(s)	155, 187
AluBI	AGCT	1 cut(s)	177
AluI	AGCT	1 cut(s)	177
Alw21I	GWGCWC	2 cut(s)	238, 341
Alw44I	GTGCAC	1 cut(s)	337
AlwI	GGATC	1 cut(s)	139
Ama87I	CYCGRG	2 cut(s)	94, 231
ApaLI	GTGCAC	1 cut(s)	337
ApeKI	GCWGC	2 cut(s)	275, 395
ApoI	RAATTY	2 cut(s)	28, 75
AspLEI	GCGC	2 cut(s)	197, 280
AspS9I	GGNCC	1 cut(s)	322
AvaI	CYCGRG	2 cut(s)	94, 231
AvaII	GGWCC	1 cut(s)	322
BaeGI	GKGCMC	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	48
Bbv12I	GWGCWC	2 cut(s)	238, 341
BbvI	GCAGC	2 cut(s)	287, 382
BccI	CCATC	1 cut(s)	289
BisI	GCNGC	2 cut(s)	276, 396
BlsI	GCNGC	2 cut(s)	277, 397
Bme18I	GGWCC	1 cut(s)	322
BmeT110I	CYCGRG	2 cut(s)	94, 231
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	2 cut(s)	140, 406
BmsI	GCATC	1 cut(s)	224
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
BpmI	CTGGAG	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	215
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	389
BseRI	GAGGAG	1 cut(s)	112
BseSI	GKGCMC	1 cut(s)	341
BseXI	GCAGC	2 cut(s)	287, 382
BsiHKAI	GWGCWC	2 cut(s)	238, 341
BsiHKCI	CYCGRG	2 cut(s)	94, 231
BslI	CCNNNNNNNGG	1 cut(s)	99
BsoBI	CYCGRG	2 cut(s)	94, 231
Bsp1286I	GDGCHC	3 cut(s)	48, 238, 341
Bsp143I	GATC	1 cut(s)	131
BspACI	CCGC	1 cut(s)	219
BspCNI	CTCAG	1 cut(s)	388
BspLI	GGNNCC	2 cut(s)	140, 406
BspPI	GGATC	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	1 cut(s)	131
BstDEI	CTNAG	1 cut(s)	375
BstF5I	GGATG	1 cut(s)	215
BstHHI	GCGC	2 cut(s)	197, 280
BstKTI	GATC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	131
BstMWI	GCNNNNNNNGC	3 cut(s)	249, 272, 284
BstNSI	RCATGY	1 cut(s)	209
BstSLI	GKGCMC	1 cut(s)	341
BstV1I	GCAGC	2 cut(s)	287, 382
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	215
CfoI	GCGC	2 cut(s)	197, 280
Cfr13I	GGNCC	1 cut(s)	322
CviAII	CATG	1 cut(s)	206
CviJI	RGCY	5 cut(s)	46, 177, 252, 366, 395
CviKI_1	RGCY	5 cut(s)	46, 177, 252, 366, 395
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	322
Eco88I	CYCGRG	2 cut(s)	94, 231
EcoRI	GAATTC	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	48
FaeI	CATG	1 cut(s)	209
FaiI	YATR	2 cut(s)	207, 282
FalI	AAGNNNNNCTT	1 cut(s)	393
FatI	CATG	1 cut(s)	205
Fnu4HI	GCNGC	2 cut(s)	276, 396
FokI	GGATG	1 cut(s)	202
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	2 cut(s)	276, 396
GlaI	GCGC	2 cut(s)	196, 279
GluI	GCNGC	2 cut(s)	276, 396
GsuI	CTGGAG	1 cut(s)	163
HhaI	GCGC	2 cut(s)	197, 280
Hin1II	CATG	1 cut(s)	209
Hin6I	GCGC	2 cut(s)	195, 278
HinP1I	GCGC	2 cut(s)	195, 278
HinfI	GANTC	2 cut(s)	106, 227
Hpy166II	GTNNAC	2 cut(s)	322, 339
Hpy188I	TCNGA	4 cut(s)	73, 90, 226, 383
Hpy188III	TCNNGA	3 cut(s)	49, 231, 331
Hpy8I	GTNNAC	2 cut(s)	322, 339
HpyAV	CCTTC	3 cut(s)	123, 185, 395
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	1 cut(s)	339
HpyF10VI	GCNNNNNNNGC	3 cut(s)	249, 272, 284
HpyF3I	CTNAG	1 cut(s)	375
HpySE526I	ACGT	1 cut(s)	260
Hsp92II	CATG	1 cut(s)	209
HspAI	GCGC	2 cut(s)	195, 278
Kzo9I	GATC	1 cut(s)	131
LmnI	GCTCC	2 cut(s)	182, 212
LpnPI	CCDG	8 cut(s)	34, 38, 120, 162, 193, 266, 287, 363
Lsp1109I	GCAGC	2 cut(s)	287, 382
LweI	GCATC	1 cut(s)	224
MaeII	ACGT	1 cut(s)	260
MalI	GATC	1 cut(s)	133
MboI	GATC	1 cut(s)	131
MboII	GAAGA	1 cut(s)	115
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	3 cut(s)	48, 238, 341
MluCI	AATT	2 cut(s)	28, 75
MmeI	TCCRAC	2 cut(s)	113, 190
MnlI	CCTC	5 cut(s)	90, 93, 145, 159, 265
MwoI	GCNNNNNNNGC	3 cut(s)	249, 272, 284
NdeII	GATC	1 cut(s)	131
NlaIII	CATG	1 cut(s)	209
NlaIV	GGNNCC	2 cut(s)	140, 406
NspI	RCATGY	1 cut(s)	209
PaeR7I	CTCGAG	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	106, 227
PkrI	GCNGC	2 cut(s)	277, 397
Psp1406I	AACGTT	1 cut(s)	260
PspN4I	GGNNCC	2 cut(s)	140, 406
PspPI	GGNCC	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	131
SatI	GCNGC	2 cut(s)	276, 396
Sau3AI	GATC	1 cut(s)	131
Sau96I	GGNCC	1 cut(s)	322
SduI	GDGCHC	3 cut(s)	48, 238, 341
SetI	ASST	7 cut(s)	27, 115, 156, 179, 263, 306, 327
SfaNI	GCATC	1 cut(s)	224
Sfr274I	CTCGAG	1 cut(s)	231
SinI	GGWCC	1 cut(s)	322
SlaI	CTCGAG	1 cut(s)	231
SmlI	CTYRAG	2 cut(s)	231, 290
SmoI	CTYRAG	2 cut(s)	231, 290
Sse9I	AATT	2 cut(s)	28, 75
SsiI	CCGC	1 cut(s)	219
SspI	AATATT	1 cut(s)	20
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	1 cut(s)	232
TasI	AATT	2 cut(s)	28, 75
TfiI	GAWTC	2 cut(s)	106, 227
TseI	GCWGC	2 cut(s)	275, 395
TspGWI	ACGGA	1 cut(s)	131
VneI	GTGCAC	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	2 cut(s)	28, 75
XceI	RCATGY	1 cut(s)	209
XhoI	CTCGAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.