AT1G62790

Lipid transfer-like protein VAS

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013181
Physical Location & Seq
Forward (+)
23252140 .. 23253743
1604 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G62790.2

Sequence Viewer

Length: 453 bp
ATGACGAAGACGATGATGATCTTTGCGGCGGCGATGACGGTGATGGCTTTGCTTTTGGTTCCGACTATTGAAGCACAAACTGAGTGCGTGAGCAAGCTAGTCCCTTGCTTCAACGACCTGAACACGACAACAACGCCGGTGAAAGAATGTTGCGACTCGATTAAAGAAGCGGTGGAGAAGGAACTTACATGTCTCTGTACAATCTACACCAGTCCAGGTTTGCTCGCTCAGTTCAACGTCACCACTGAGAAAGCTCTCGGTCTTAGCCGTCGTTGCAACGTCACCACTGATCTCTCCGCTTGTACCGCTAAAGGAGCTCCATCGCCAAAAGCTTCTTTACCTCCTCCAGCTCCAGCAGGGAATACCAAAAAAGACGCCGGAGCTGGGAACAAGCTCGCCGGTTATGGAGTCACCACCGTGATCTTGTCTTTGATCTCATCCATCTTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

150

Amino Acids

15.71

Weight (kDa)

8.11

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 12 - 101 3.8e-18 Probable lipid transfer
Tryp_alpha_amyl PF00234 30 - 98 4e-06 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62790 AT1G62790
fragaria_vesca FvH4_5g00460
malus_domestica MD04G1081000.v1.1 MD06G1064500.v1.1
prunus_persica Prupe.5G077100_v2.0.a1
pyrus_communis pycom06g05560
rosa_chinensis RchiOBHm_Chr7g0202051
rosa_laevigata RLG00000003629
rosa_multiflora Rmu_co8366653.1_g000001 Rmu_sc0006592.1_g000005
rosa_roxburghii Rroxscaffold_3G00254900
rosa_rugosa Rorug07G0067700 Rorug07G0067700
rosa_samantha Rh7AG195000 Rh7BG196400 Rh7DG201600
rosa_wichuraiana Rw7G017080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 26, 29, 170, 297, 306
AcyI GRCGYC 1 cut(s) 375
AfaI GTAC 2 cut(s) 199, 304
AfiI CCNNNNNNNGG 1 cut(s) 384
AflIII ACRYGT 1 cut(s) 188
AgsI TTSAA 3 cut(s) 71, 112, 235
AjnI CCWGG 1 cut(s) 214
AleI CACNNNNGTG 1 cut(s) 416
AluBI AGCT 7 cut(s) 97, 254, 317, 332, 350, 383, 394
AluI AGCT 7 cut(s) 97, 254, 317, 332, 350, 383, 394
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 1 cut(s) 197
AsuHPI GGTGA 5 cut(s) 52, 151, 232, 274, 403
BanII GRGCYC 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 319
BccI CCATC 3 cut(s) 37, 328, 449
BceAI ACGGC 1 cut(s) 252
BciT130I CCWGG 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 1 cut(s) 98
BisI GCNGC 2 cut(s) 27, 30
BlsI GCNGC 2 cut(s) 28, 31
Bme1390I CCNGG 1 cut(s) 216
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 216
BpiI GAAGAC 1 cut(s) 14
BpmI CTGGAG 2 cut(s) 330, 336
BsaBI GATNNNNATC 1 cut(s) 17
BsaHI GRCGYC 1 cut(s) 375
Bsc4I CCNNNNNNNGG 1 cut(s) 384
Bse118I RCCGGY 2 cut(s) 136, 398
Bse1I ACTGG 1 cut(s) 210
Bse8I GATNNNNATC 1 cut(s) 17
BseBI CCWGG 1 cut(s) 216
BseGI GGATG 1 cut(s) 437
BseJI GATNNNNATC 1 cut(s) 17
BseLI CCNNNNNNNGG 1 cut(s) 384
BseMII CTCAG 3 cut(s) 72, 237, 242
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 333
BseYI CCCAGC 1 cut(s) 383
BsiHKAI GWGCWC 1 cut(s) 319
BsiSI CCGG 3 cut(s) 137, 378, 399
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 384
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 319
Bsp1407I TGTACA 1 cut(s) 197
Bsp143I GATC 4 cut(s) 18, 289, 420, 432
BspACI CCGC 5 cut(s) 26, 29, 170, 297, 306
BspCNI CTCAG 3 cut(s) 73, 238, 241
BspLI GGNNCC 1 cut(s) 60
BsrFI RCCGGY 2 cut(s) 136, 398
BsrGI TGTACA 1 cut(s) 197
BsrI ACTGG 1 cut(s) 210
BssAI RCCGGY 2 cut(s) 136, 398
BssMI GATC 4 cut(s) 18, 289, 420, 432
BssNI GRCGYC 1 cut(s) 375
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 2 cut(s) 40, 418
BstACI GRCGYC 1 cut(s) 375
BstAUI TGTACA 1 cut(s) 197
BstC8I GCNNGC 3 cut(s) 95, 225, 396
BstDEI CTNAG 4 cut(s) 81, 228, 246, 263
BstF5I GGATG 1 cut(s) 437
BstKTI GATC 4 cut(s) 21, 292, 423, 435
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 4 cut(s) 18, 289, 420, 432
BstMWI GCNNNNNNNGC 3 cut(s) 273, 305, 314
BstNI CCWGG 1 cut(s) 216
BstNSI RCATGY 1 cut(s) 192
BstSCI CCNGG 1 cut(s) 214
BstV2I GAAGAC 1 cut(s) 14
BtgZI GCGATG 2 cut(s) 47, 306
BtsCI GGATG 1 cut(s) 437
BtsIMutI CAGTG 2 cut(s) 243, 285
Cac8I GCNNGC 3 cut(s) 95, 225, 396
Cfr10I RCCGGY 2 cut(s) 136, 398
CseI GACGC 1 cut(s) 383
Csp6I GTAC 2 cut(s) 198, 303
CviAII CATG 1 cut(s) 189
CviJI RGCY 9 cut(s) 47, 97, 254, 267, 317, 332, 350, 383, 394
CviKI_1 RGCY 9 cut(s) 47, 97, 254, 267, 317, 332, 350, 383, 394
CviQI GTAC 2 cut(s) 198, 303
DdeI CTNAG 4 cut(s) 81, 228, 246, 263
DpnI GATC 4 cut(s) 20, 291, 422, 434
DpnII GATC 4 cut(s) 18, 289, 420, 432
Ecl136II GAGCTC 1 cut(s) 317
Eco24I GRGCYC 1 cut(s) 319
Eco53kI GAGCTC 1 cut(s) 317
EcoICRI GAGCTC 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 319
FaeI CATG 1 cut(s) 192
FaiI YATR 2 cut(s) 190, 405
FaqI GGGAC 1 cut(s) 86
FatI CATG 1 cut(s) 188
Fnu4HI GCNGC 2 cut(s) 27, 30
FokI GGATG 1 cut(s) 424
FriOI GRGCYC 1 cut(s) 319
Fsp4HI GCNGC 2 cut(s) 27, 30
FspBI CTAG 1 cut(s) 98
GluI GCNGC 2 cut(s) 27, 30
GsaI CCCAGC 1 cut(s) 387
GsuI CTGGAG 2 cut(s) 330, 336
HapII CCGG 3 cut(s) 137, 378, 399
HgaI GACGC 1 cut(s) 383
Hin1I GRCGYC 1 cut(s) 375
Hin1II CATG 1 cut(s) 192
HindIII AAGCTT 1 cut(s) 330
HinfI GANTC 2 cut(s) 155, 408
HpaII CCGG 3 cut(s) 137, 378, 399
HphI GGTGA 5 cut(s) 52, 151, 232, 274, 403
Hpy188I TCNGA 2 cut(s) 63, 452
Hpy99I CGWCG 1 cut(s) 273
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 2 cut(s) 40, 418
HpyCH4IV ACGT 2 cut(s) 237, 279
HpyCH4V TGCA 1 cut(s) 276
HpyF10VI GCNNNNNNNGC 3 cut(s) 273, 305, 314
HpyF3I CTNAG 4 cut(s) 81, 228, 246, 263
HpySE526I ACGT 2 cut(s) 237, 279
Hsp92I GRCGYC 1 cut(s) 375
Hsp92II CATG 1 cut(s) 192
Kzo9I GATC 4 cut(s) 18, 289, 420, 432
LmnI GCTCC 4 cut(s) 314, 322, 355, 380
MaeI CTAG 1 cut(s) 98
MaeII ACGT 2 cut(s) 237, 279
MaeIII GTNAC 3 cut(s) 238, 280, 409
MalI GATC 4 cut(s) 20, 291, 422, 434
MboI GATC 4 cut(s) 18, 289, 420, 432
MboII GAAGA 3 cut(s) 19, 436, 439
MhlI GDGCHC 1 cut(s) 319
MlyI GAGTC 2 cut(s) 149, 417
MmeI TCCRAC 1 cut(s) 86
MnlI CCTC 2 cut(s) 351, 354
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 1 cut(s) 416
MspI CCGG 3 cut(s) 137, 378, 399
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 3 cut(s) 273, 305, 314
NdeII GATC 4 cut(s) 18, 289, 420, 432
NlaIII CATG 1 cut(s) 192
NlaIV GGNNCC 1 cut(s) 60
NmuCI GTSAC 3 cut(s) 238, 280, 409
NspI RCATGY 1 cut(s) 192
OliI CACNNNNGTG 1 cut(s) 416
PciI ACATGT 1 cut(s) 188
PkrI GCNGC 2 cut(s) 28, 31
PleI GAGTC 2 cut(s) 149, 416
PpsI GAGTC 2 cut(s) 149, 416
PscI ACATGT 1 cut(s) 188
Psp124BI GAGCTC 1 cut(s) 319
Psp6I CCWGG 1 cut(s) 214
PspFI CCCAGC 1 cut(s) 383
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 60
RsaI GTAC 2 cut(s) 199, 304
RsaNI GTAC 2 cut(s) 198, 303
RseI CAYNNNNRTG 1 cut(s) 416
SacI GAGCTC 1 cut(s) 319
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 2 cut(s) 27, 30
Sau3AI GATC 4 cut(s) 18, 289, 420, 432
SchI GAGTC 2 cut(s) 149, 417
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 1 cut(s) 319
SgrAI CRCCGGYG 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 416
SsiI CCGC 5 cut(s) 26, 29, 170, 297, 306
SspMI CTAG 1 cut(s) 98
SstI GAGCTC 1 cut(s) 319
StyD4I CCNGG 1 cut(s) 214
TaaI ACNGT 2 cut(s) 40, 418
TaiI ACGT 2 cut(s) 240, 282
TaqI TCGA 1 cut(s) 158
TaqII GACCGA 1 cut(s) 248
TatI WGTACW 1 cut(s) 197
TauI GCSGC 2 cut(s) 29, 32
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 2 cut(s) 250, 292
TseFI GTSAC 3 cut(s) 238, 280, 409
Tsp45I GTSAC 3 cut(s) 238, 280, 409
TspRI CASTG 2 cut(s) 250, 292
XceI RCATGY 1 cut(s) 192
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.