Rroxscaffold_3G00254900

lipid transfer-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0013181
Physical Location & Seq
Forward (+)
49197324 .. 49199087
1764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00254900.1

Sequence Viewer

Length: 456 bp
ATGGGTTCCTGCAACATGTCCACACTGACGGCCATGGTGGTTGTGGTGGCCTTGTTGGGCTCCATGGCGAGCCCAACCAAGGCTCAGGAGACCTGCGCTAATGACCTGGTGCCTTGTGCAGACTACCTCAACAACACGGACCAACCATCCACCACCTGCTGCACCGCCATCAAACAGACCGTGGCTACCCAGCTCCGCTGCCTGTGCAATCTCTATTTTACCCCCGGACTTCTCCAGTCCCTGGGCGCTAACGTCACCTCGGCTCTCAGAATTGCCAACGCTTGCGGCGTCGACTCTGTCGGTGTTGATCAGTGCAAGGCTATCCTGGGTCAAGCACCAACTGGTTCTCCACCTTCAGCTGTACCGGGAGGTGATGGTGGCAGTGGTTCGGGCAGGATTGCGTGGACCGGACTCCCTGCTCTGCTCTTATTCTGGGCCTCCGTCATGTATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

151

Amino Acids

15.41

Weight (kDa)

4.92

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 14 - 105 2.2e-15 Probable lipid transfer
Tryp_alpha_amyl PF00234 34 - 99 1.3e-06 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62790 AT1G62790
fragaria_vesca FvH4_5g00460
malus_domestica MD04G1081000.v1.1 MD06G1064500.v1.1
prunus_persica Prupe.5G077100_v2.0.a1
pyrus_communis pycom06g05560
rosa_chinensis RchiOBHm_Chr7g0202051
rosa_laevigata RLG00000003629
rosa_multiflora Rmu_co8366653.1_g000001 Rmu_sc0006592.1_g000005
rosa_roxburghii Rroxscaffold_3G00254900
rosa_rugosa Rorug07G0067700 Rorug07G0067700
rosa_samantha Rh7AG195000 Rh7BG196400 Rh7DG201600
rosa_wichuraiana Rw7G017080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 164
Acc36I ACCTGC 2 cut(s) 101, 164
AccB1I GGYRCC 1 cut(s) 109
AccB7I CCANNNNNTGG 1 cut(s) 241
AccI GTMKAC 1 cut(s) 291
AciI CCGC 3 cut(s) 165, 196, 285
AcoI YGGCCR 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 339
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 1 cut(s) 363
AfiI CCNNNNNNNGG 2 cut(s) 79, 241
AflIII ACRYGT 1 cut(s) 15
AjnI CCWGG 3 cut(s) 105, 240, 324
AluBI AGCT 2 cut(s) 193, 359
AluI AGCT 2 cut(s) 193, 359
Alw26I GTCTC 1 cut(s) 83
AlwNI CAGNNNCTG 1 cut(s) 241
AoxI GGCC 3 cut(s) 30, 48, 435
ApeKI GCWGC 2 cut(s) 159, 198
AspLEI GCGC 2 cut(s) 98, 248
AspS9I GGNCC 3 cut(s) 139, 405, 435
AsuC2I CCSGG 2 cut(s) 225, 366
AsuHPI GGTGA 2 cut(s) 247, 383
AvaII GGWCC 2 cut(s) 139, 405
BanI GGYRCC 1 cut(s) 109
BanII GRGCYC 2 cut(s) 62, 74
BbvI GCAGC 2 cut(s) 146, 185
BccI CCATC 3 cut(s) 154, 176, 368
BceAI ACGGC 1 cut(s) 45
BciT130I CCWGG 3 cut(s) 107, 242, 326
BclI TGATCA 1 cut(s) 307
BcnI CCSGG 2 cut(s) 225, 366
BcoDI GTCTC 1 cut(s) 83
BfoI RGCGCY 1 cut(s) 249
BfuAI ACCTGC 2 cut(s) 101, 164
BisI GCNGC 3 cut(s) 160, 199, 286
BlsI GCNGC 3 cut(s) 161, 200, 287
Bme1390I CCNGG 5 cut(s) 107, 225, 242, 326, 366
Bme18I GGWCC 2 cut(s) 139, 405
BmgT120I GGNCC 3 cut(s) 139, 405, 435
BmiI GGNNCC 3 cut(s) 7, 61, 111
BmrFI CCNGG 5 cut(s) 107, 225, 242, 326, 366
BpmI CTGGAG 1 cut(s) 218
Bpu10I CCTNAGC 1 cut(s) 84
BpuMI CCSGG 2 cut(s) 225, 366
BsaHI GRCGYC 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 83
BsaJI CCNNGG 9 cut(s) 33, 63, 78, 180, 223, 240, 241, 258, 325
BsaWI WCCGGW 1 cut(s) 407
BsaXI ACNNNNNCTCC 2 cut(s) 331, 361
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 241
Bse1I ACTGG 2 cut(s) 235, 346
BseBI CCWGG 3 cut(s) 107, 242, 326
BseDI CCNNGG 9 cut(s) 33, 63, 78, 180, 223, 240, 241, 258, 325
BseGI GGATG 1 cut(s) 146
BseLI CCNNNNNNNGG 2 cut(s) 79, 241
BseMII CTCAG 2 cut(s) 98, 280
BseNI ACTGG 2 cut(s) 235, 346
BseXI GCAGC 2 cut(s) 146, 185
BseYI CCCAGC 1 cut(s) 189
BsgI GTGCAG 2 cut(s) 138, 145
BshFI GGCC 3 cut(s) 32, 50, 437
BshNI GGYRCC 1 cut(s) 109
BsiSI CCGG 3 cut(s) 225, 365, 408
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 2 cut(s) 79, 241
BsmAI GTCTC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 3 cut(s) 32, 50, 437
Bso31I GGTCTC 1 cut(s) 83
Bsp1286I GDGCHC 2 cut(s) 62, 74
Bsp143I GATC 1 cut(s) 307
Bsp19I CCATGG 2 cut(s) 33, 63
BspACI CCGC 3 cut(s) 165, 196, 285
BspANI GGCC 3 cut(s) 32, 50, 437
BspCNI CTCAG 2 cut(s) 97, 279
BspLI GGNNCC 3 cut(s) 7, 61, 111
BspMI ACCTGC 2 cut(s) 101, 164
BspT107I GGYRCC 1 cut(s) 109
BspTNI GGTCTC 1 cut(s) 83
BsrI ACTGG 2 cut(s) 235, 346
BssECI CCNNGG 9 cut(s) 33, 63, 78, 180, 223, 240, 241, 258, 325
BssMI GATC 1 cut(s) 307
BssNI GRCGYC 1 cut(s) 288
BssT1I CCWWGG 3 cut(s) 33, 63, 78
Bst2UI CCWGG 3 cut(s) 107, 242, 326
Bst4CI ACNGT 1 cut(s) 181
BstACI GRCGYC 1 cut(s) 288
BstC8I GCNNGC 2 cut(s) 70, 283
BstDEI CTNAG 2 cut(s) 84, 266
BstDSI CCRYGG 3 cut(s) 33, 63, 180
BstF5I GGATG 1 cut(s) 146
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 2 cut(s) 98, 248
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 1 cut(s) 204
BstNI CCWGG 3 cut(s) 107, 242, 326
BstNSI RCATGY 1 cut(s) 19
BstSCI CCNGG 5 cut(s) 105, 223, 240, 324, 364
BstV1I GCAGC 2 cut(s) 146, 185
BsuRI GGCC 3 cut(s) 32, 50, 437
BtgI CCRYGG 3 cut(s) 33, 63, 180
BtsCI GGATG 1 cut(s) 146
BtsI GCAGTG 1 cut(s) 388
BtsIMutI CAGTG 3 cut(s) 23, 317, 388
BveI ACCTGC 2 cut(s) 101, 164
Cac8I GCNNGC 2 cut(s) 70, 283
CaiI CAGNNNCTG 1 cut(s) 241
CfoI GCGC 2 cut(s) 98, 248
Cfr13I GGNCC 3 cut(s) 139, 405, 435
CseI GACGC 1 cut(s) 277
CsiI ACCWGGT 1 cut(s) 105
Csp6I GTAC 1 cut(s) 362
CviAII CATG 4 cut(s) 16, 34, 64, 445
CviQI GTAC 1 cut(s) 362
DdeI CTNAG 2 cut(s) 84, 266
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
EaeI YGGCCR 1 cut(s) 30
Eco130I CCWWGG 3 cut(s) 33, 63, 78
Eco24I GRGCYC 2 cut(s) 62, 74
Eco31I GGTCTC 1 cut(s) 83
Eco47I GGWCC 2 cut(s) 139, 405
Eco57I CTGAAG 1 cut(s) 339
EcoRII CCWGG 3 cut(s) 105, 240, 324
EcoT14I CCWWGG 3 cut(s) 33, 63, 78
EcoT38I GRGCYC 2 cut(s) 62, 74
ErhI CCWWGG 3 cut(s) 33, 63, 78
FaeI CATG 4 cut(s) 19, 37, 67, 448
FaiI YATR 4 cut(s) 17, 35, 65, 446
FaqI GGGAC 1 cut(s) 223
FatI CATG 4 cut(s) 15, 33, 63, 444
FbaI TGATCA 1 cut(s) 307
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 3 cut(s) 160, 199, 286
FokI GGATG 1 cut(s) 133
FriOI GRGCYC 2 cut(s) 62, 74
Fsp4HI GCNGC 3 cut(s) 160, 199, 286
GlaI GCGC 2 cut(s) 97, 247
GluI GCNGC 3 cut(s) 160, 199, 286
GsaI CCCAGC 1 cut(s) 193
GsuI CTGGAG 1 cut(s) 218
HaeII RGCGCY 1 cut(s) 249
HaeIII GGCC 3 cut(s) 32, 50, 437
HapII CCGG 3 cut(s) 225, 365, 408
HgaI GACGC 1 cut(s) 277
HhaI GCGC 2 cut(s) 98, 248
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 4 cut(s) 19, 37, 67, 448
Hin6I GCGC 2 cut(s) 96, 246
HinP1I GCGC 2 cut(s) 96, 246
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 2 cut(s) 293, 411
HpaII CCGG 3 cut(s) 225, 365, 408
HphI GGTGA 2 cut(s) 247, 383
Hpy166II GTNNAC 3 cut(s) 21, 292, 405
Hpy188I TCNGA 1 cut(s) 269
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 3 cut(s) 21, 292, 405
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 1 cut(s) 363
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 5 cut(s) 12, 119, 162, 207, 315
HpyF10VI GCNNNNNNNGC 1 cut(s) 204
HpyF3I CTNAG 2 cut(s) 84, 266
HpySE526I ACGT 1 cut(s) 252
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 4 cut(s) 19, 37, 67, 448
HspAI GCGC 2 cut(s) 96, 246
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 2 cut(s) 65, 198
Lsp1109I GCAGC 2 cut(s) 146, 185
MabI ACCWGGT 1 cut(s) 105
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 253
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MhlI GDGCHC 2 cut(s) 62, 74
MluCI AATT 1 cut(s) 270
MlyI GAGTC 2 cut(s) 287, 405
MnlI CCTC 4 cut(s) 137, 268, 362, 448
MspA1I CMGCKG 2 cut(s) 198, 359
MspI CCGG 3 cut(s) 225, 365, 408
MspR9I CCNGG 5 cut(s) 107, 225, 242, 326, 366
MvaI CCWGG 3 cut(s) 107, 242, 326
MwoI GCNNNNNNNGC 1 cut(s) 204
NciI CCSGG 2 cut(s) 225, 366
NcoI CCATGG 2 cut(s) 33, 63
NdeII GATC 1 cut(s) 307
NlaIII CATG 4 cut(s) 19, 37, 67, 448
NlaIV GGNNCC 3 cut(s) 7, 61, 111
NmeAIII GCCGAG 1 cut(s) 239
NmuCI GTSAC 1 cut(s) 253
NspI RCATGY 1 cut(s) 19
PaqCI CACCTGC 1 cut(s) 164
PasI CCCWGGG 1 cut(s) 241
PciI ACATGT 1 cut(s) 15
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PflFI GACNNNGTC 1 cut(s) 296
PflMI CCANNNNNTGG 1 cut(s) 241
PkrI GCNGC 3 cut(s) 161, 200, 287
PleI GAGTC 2 cut(s) 287, 405
PpsI GAGTC 2 cut(s) 287, 405
PscI ACATGT 1 cut(s) 15
Psp6I CCWGG 3 cut(s) 105, 240, 324
PspFI CCCAGC 1 cut(s) 189
PspGI CCWGG 3 cut(s) 105, 240, 324
PspN4I GGNNCC 3 cut(s) 7, 61, 111
PspPI GGNCC 3 cut(s) 139, 405, 435
PstNI CAGNNNCTG 1 cut(s) 241
PsyI GACNNNGTC 1 cut(s) 296
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
SalI GTCGAC 1 cut(s) 290
SatI GCNGC 3 cut(s) 160, 199, 286
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 3 cut(s) 139, 405, 435
SchI GAGTC 2 cut(s) 287, 405
ScrFI CCNGG 5 cut(s) 107, 225, 242, 326, 366
SduI GDGCHC 2 cut(s) 62, 74
SexAI ACCWGGT 1 cut(s) 105
SinI GGWCC 2 cut(s) 139, 405
Sse9I AATT 1 cut(s) 270
SsiI CCGC 3 cut(s) 165, 196, 285
StyD4I CCNGG 5 cut(s) 105, 223, 240, 324, 364
StyI CCWWGG 3 cut(s) 33, 63, 78
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 1 cut(s) 255
TaqI TCGA 1 cut(s) 291
TasI AATT 1 cut(s) 270
TauI GCSGC 1 cut(s) 288
TscAI CASTG 3 cut(s) 30, 317, 388
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 2 cut(s) 159, 198
Tsp45I GTSAC 1 cut(s) 253
TspGWI ACGGA 2 cut(s) 152, 430
TspRI CASTG 3 cut(s) 30, 317, 388
Tth111I GACNNNGTC 1 cut(s) 296
Van91I CCANNNNNTGG 1 cut(s) 241
VpaK11BI GGWCC 2 cut(s) 139, 405
XceI RCATGY 1 cut(s) 19
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XmiI GTMKAC 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.