pycom06g05560

Lipid transfer-like protein VAS

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0013181
Physical Location & Seq
Reverse (-)
8313788 .. 8315996
2209 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g05560.2

Sequence Viewer

Length: 465 bp
ATGGGCAGCTATAGCATTTCCAAGTTGGCGATGGCCACGGTGGTTGTGTTGTTAGGCATGGTAAGTTTGGTCGGACCGTCAGCCGGTCAAACGACCCCTGCTTGTGCTCAGGACCTGGTGCCCTGCGCTGACTACCTCAAGAACACAGCTCAGCCAGCTGCCAACTGCTGCACCGCCATCAAGCAGGCGGTGGCCACCCAGTTTGTGTGTCTCTGCAACCTCTTTTTCACTCCCGGACTCCTTGAGACTTTTGGCGGCAACGCCACTTCCGGTCTCAGAATCGCCACCGCTTGCGGCGAATCAATGGATAACGCCAAATGCAAAGCTGCCATAGGTGCTCCTACACCAGAATCCACACCTGGAACCCCTGGAACACCGGGAAATGACGGTAGCGGTTCCGGCAAGGTTGAGTGGACTGGATTTTCTGCTCTGCTCTTATTATGGGCTTCTGTCATGTCATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

155

Amino Acids

15.55

Weight (kDa)

5.13

Isoelectric Point (pI)

28.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62790 AT1G62790
fragaria_vesca FvH4_5g00460
malus_domestica MD04G1081000.v1.1 MD06G1064500.v1.1
prunus_persica Prupe.5G077100_v2.0.a1
pyrus_communis pycom06g05560
rosa_chinensis RchiOBHm_Chr7g0202051
rosa_laevigata RLG00000003629
rosa_multiflora Rmu_co8366653.1_g000001 Rmu_sc0006592.1_g000005
rosa_roxburghii Rroxscaffold_3G00254900
rosa_rugosa Rorug07G0067700 Rorug07G0067700
rosa_samantha Rh7AG195000 Rh7BG196400 Rh7DG201600
rosa_wichuraiana Rw7G017080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 118
AciI CCGC 6 cut(s) 174, 188, 255, 288, 294, 393
AcoI YGGCCR 2 cut(s) 33, 192
AfiI CCNNNNNNNGG 1 cut(s) 83
AjnI CCWGG 3 cut(s) 114, 358, 367
AluBI AGCT 4 cut(s) 9, 149, 158, 326
AluI AGCT 4 cut(s) 9, 149, 158, 326
Alw21I GWGCWC 2 cut(s) 109, 340
Alw26I GTCTC 3 cut(s) 215, 239, 278
AlwNI CAGNNNCTG 1 cut(s) 115
AoxI GGCC 2 cut(s) 33, 192
ApeKI GCWGC 4 cut(s) 6, 158, 168, 326
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 2 cut(s) 74, 112
AsuC2I CCSGG 2 cut(s) 234, 378
AvaII GGWCC 2 cut(s) 74, 112
BaeGI GKGCMC 1 cut(s) 123
BalI TGGCCA 2 cut(s) 35, 194
BanI GGYRCC 1 cut(s) 118
Bbv12I GWGCWC 2 cut(s) 109, 340
BbvI GCAGC 4 cut(s) 18, 145, 155, 313
BccI CCATC 2 cut(s) 25, 185
BciT130I CCWGG 3 cut(s) 116, 360, 369
BcnI CCSGG 2 cut(s) 234, 378
BcoDI GTCTC 3 cut(s) 215, 239, 278
BfmI CTRYAG 1 cut(s) 10
BisI GCNGC 6 cut(s) 7, 159, 169, 256, 295, 327
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 6 cut(s) 8, 160, 170, 257, 296, 328
Bme1390I CCNGG 5 cut(s) 116, 234, 360, 369, 378
Bme18I GGWCC 2 cut(s) 74, 112
BmgT120I GGNCC 2 cut(s) 74, 112
BmiI GGNNCC 3 cut(s) 120, 364, 397
BmrFI CCNGG 5 cut(s) 116, 234, 360, 369, 378
BmrI ACTGGG 1 cut(s) 193
BmuI ACTGGG 1 cut(s) 193
Bpu10I CCTNAGC 1 cut(s) 108
Bpu1102I GCTNAGC 1 cut(s) 150
BpuEI CTTGAG 2 cut(s) 122, 263
BpuMI CCSGG 2 cut(s) 234, 378
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 2 cut(s) 36, 367
BsaWI WCCGGW 1 cut(s) 269
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 199, 421
BseBI CCWGG 3 cut(s) 116, 360, 369
BseDI CCNNGG 2 cut(s) 36, 367
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMII CTCAG 3 cut(s) 122, 164, 289
BseNI ACTGG 2 cut(s) 199, 421
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 4 cut(s) 18, 145, 155, 313
BsgI GTGCAG 1 cut(s) 154
BshFI GGCC 2 cut(s) 35, 194
BshNI GGYRCC 1 cut(s) 118
BsiHKAI GWGCWC 2 cut(s) 109, 340
BsiSI CCGG 5 cut(s) 84, 234, 270, 377, 399
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 3 cut(s) 215, 239, 278
BsnI GGCC 2 cut(s) 35, 194
Bso31I GGTCTC 1 cut(s) 278
Bsp1286I GDGCHC 3 cut(s) 109, 123, 340
Bsp1720I GCTNAGC 1 cut(s) 150
BspACI CCGC 6 cut(s) 174, 188, 255, 288, 294, 393
BspANI GGCC 2 cut(s) 35, 194
BspCNI CTCAG 3 cut(s) 121, 163, 288
BspLI GGNNCC 3 cut(s) 120, 364, 397
BspT107I GGYRCC 1 cut(s) 118
BspTNI GGTCTC 1 cut(s) 278
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 2 cut(s) 199, 421
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 2 cut(s) 36, 367
Bst2UI CCWGG 3 cut(s) 116, 360, 369
Bst4CI ACNGT 3 cut(s) 40, 78, 389
BstC8I GCNNGC 3 cut(s) 156, 186, 292
BstDEI CTNAG 3 cut(s) 108, 150, 275
BstDSI CCRYGG 1 cut(s) 36
BstHHI GCGC 1 cut(s) 128
BstMAI GTCTC 3 cut(s) 215, 239, 278
BstMWI GCNNNNNNNGC 4 cut(s) 12, 155, 335, 399
BstNI CCWGG 3 cut(s) 116, 360, 369
BstSCI CCNGG 5 cut(s) 114, 232, 358, 367, 376
BstSFI CTRYAG 1 cut(s) 10
BstSLI GKGCMC 1 cut(s) 123
BstV1I GCAGC 4 cut(s) 18, 145, 155, 313
BsuRI GGCC 2 cut(s) 35, 194
BtgI CCRYGG 1 cut(s) 36
BtgZI GCGATG 1 cut(s) 44
Cac8I GCNNGC 3 cut(s) 156, 186, 292
CaiI CAGNNNCTG 1 cut(s) 115
CfoI GCGC 1 cut(s) 128
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 74, 112
CpoI CGGWCCG 1 cut(s) 74
CsiI ACCWGGT 1 cut(s) 114
CspCI CAANNNNNGTGG 4 cut(s) 25, 60, 184, 219
CspI CGGWCCG 1 cut(s) 74
CviAII CATG 2 cut(s) 58, 454
CviJI RGCY 9 cut(s) 9, 35, 83, 149, 154, 158, 194, 326, 446
CviKI_1 RGCY 9 cut(s) 9, 35, 83, 149, 154, 158, 194, 326, 446
DdeI CTNAG 3 cut(s) 108, 150, 275
EaeI YGGCCR 2 cut(s) 33, 192
Eco31I GGTCTC 1 cut(s) 278
Eco47I GGWCC 2 cut(s) 74, 112
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 3 cut(s) 114, 358, 367
FaeI CATG 2 cut(s) 61, 457
FaiI YATR 6 cut(s) 12, 59, 332, 442, 455, 460
FatI CATG 2 cut(s) 57, 453
Fnu4HI GCNGC 6 cut(s) 7, 159, 169, 256, 295, 327
Fsp4HI GCNGC 6 cut(s) 7, 159, 169, 256, 295, 327
GlaI GCGC 1 cut(s) 127
GluI GCNGC 6 cut(s) 7, 159, 169, 256, 295, 327
HaeIII GGCC 2 cut(s) 35, 194
HapII CCGG 5 cut(s) 84, 234, 270, 377, 399
HhaI GCGC 1 cut(s) 128
Hin1II CATG 2 cut(s) 61, 457
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HinfI GANTC 4 cut(s) 237, 279, 299, 350
HpaII CCGG 5 cut(s) 84, 234, 270, 377, 399
Hpy166II GTNNAC 1 cut(s) 414
Hpy188I TCNGA 2 cut(s) 74, 278
Hpy188III TCNNGA 2 cut(s) 110, 139
Hpy8I GTNNAC 1 cut(s) 414
HpyCH4III ACNGT 3 cut(s) 40, 78, 389
HpyCH4V TGCA 3 cut(s) 171, 216, 321
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 155, 335, 399
HpyF3I CTNAG 3 cut(s) 108, 150, 275
Hsp92II CATG 2 cut(s) 61, 457
HspAI GCGC 1 cut(s) 126
LmnI GCTCC 1 cut(s) 343
Lsp1109I GCAGC 4 cut(s) 18, 145, 155, 313
MabI ACCWGGT 1 cut(s) 114
MhlI GDGCHC 3 cut(s) 109, 123, 340
MlsI TGGCCA 2 cut(s) 35, 194
MluNI TGGCCA 2 cut(s) 35, 194
MlyI GAGTC 1 cut(s) 231
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 2 cut(s) 146, 230
Mox20I TGGCCA 2 cut(s) 35, 194
MscI TGGCCA 2 cut(s) 35, 194
Msp20I TGGCCA 2 cut(s) 35, 194
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 5 cut(s) 84, 234, 270, 377, 399
MspR9I CCNGG 5 cut(s) 116, 234, 360, 369, 378
MvaI CCWGG 3 cut(s) 116, 360, 369
MwoI GCNNNNNNNGC 4 cut(s) 12, 155, 335, 399
NciI CCSGG 2 cut(s) 234, 378
NlaIII CATG 2 cut(s) 61, 457
NlaIV GGNNCC 3 cut(s) 120, 364, 397
PfeI GAWTC 3 cut(s) 279, 299, 350
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 6 cut(s) 8, 160, 170, 257, 296, 328
PleI GAGTC 1 cut(s) 231
PpsI GAGTC 1 cut(s) 231
PpuMI RGGWCCY 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 112
Psp6I CCWGG 3 cut(s) 114, 358, 367
PspGI CCWGG 3 cut(s) 114, 358, 367
PspN4I GGNNCC 3 cut(s) 120, 364, 397
PspPI GGNCC 2 cut(s) 74, 112
PspPPI RGGWCCY 1 cut(s) 112
PstNI CAGNNNCTG 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 158
Rsr2I CGGWCCG 1 cut(s) 74
RsrII CGGWCCG 1 cut(s) 74
SatI GCNGC 6 cut(s) 7, 159, 169, 256, 295, 327
Sau96I GGNCC 2 cut(s) 74, 112
SchI GAGTC 1 cut(s) 231
ScrFI CCNGG 5 cut(s) 116, 234, 360, 369, 378
SduI GDGCHC 3 cut(s) 109, 123, 340
SexAI ACCWGGT 1 cut(s) 114
SfcI CTRYAG 1 cut(s) 10
SinI GGWCC 2 cut(s) 74, 112
SmlI CTYRAG 2 cut(s) 137, 242
SmoI CTYRAG 2 cut(s) 137, 242
SsiI CCGC 6 cut(s) 174, 188, 255, 288, 294, 393
StyD4I CCNGG 5 cut(s) 114, 232, 358, 367, 376
TaaI ACNGT 3 cut(s) 40, 78, 389
TauI GCSGC 2 cut(s) 258, 297
TfiI GAWTC 3 cut(s) 279, 299, 350
TseI GCWGC 4 cut(s) 6, 158, 168, 326
VpaK11BI GGWCC 2 cut(s) 74, 112
XcmI CCANNNNNNNNNTGG 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.