RLG00000003629

lipid transfer-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013181
Physical Location & Seq
Forward (+)
50949189 .. 50951474
2286 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003629

Sequence Viewer

Length: 387 bp
ATGGGTTCCTGGAACATATCCACACTGACGGCCATGGTGGTTCTGGTGGCCTTGTTGGGCTCGCCAACCAAGGCACAGGAGTCGACCTGCGCTAATGACCTGGTGCCTTGTGCAGGGTACCTCAACAACACGGACCAACCATCCGCCACCTGCTGCACCGCCATCAAACAGACCGTGGCTACCCAGCTCCGCTGCCTGTGCAATCTCTATTTTACCCCCGGACTAATCCAGGCCCTGGGCGCTAACACCACCTCGGCTCTCAGAATTGCCAACGCTTGCGGCGTCAACTCTCTCGGCCTTGATCAGTGCAAAGCTCTCCTGGGTCAAGCACCAACTGGTTCTCCACCTTCAGGTACCACACTTTTTCTCATATTAAAATCCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

129

Amino Acids

13.18

Weight (kDa)

8.15

Isoelectric Point (pI)

39.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 12 - 98 6.5e-14 Probable lipid transfer
Tryp_alpha_amyl PF00234 32 - 97 1.3e-06 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62790 AT1G62790
fragaria_vesca FvH4_5g00460
malus_domestica MD04G1081000.v1.1 MD06G1064500.v1.1
prunus_persica Prupe.5G077100_v2.0.a1
pyrus_communis pycom06g05560
rosa_chinensis RchiOBHm_Chr7g0202051
rosa_laevigata RLG00000003629
rosa_multiflora Rmu_co8366653.1_g000001 Rmu_sc0006592.1_g000005
rosa_roxburghii Rroxscaffold_3G00254900
rosa_rugosa Rorug07G0067700 Rorug07G0067700
rosa_samantha Rh7AG195000 Rh7BG196400 Rh7DG201600
rosa_wichuraiana Rw7G017080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 158
Acc36I ACCTGC 2 cut(s) 95, 158
Acc65I GGTACC 2 cut(s) 117, 353
AccB1I GGYRCC 3 cut(s) 103, 117, 353
AccB7I CCANNNNNTGG 1 cut(s) 235
AccI GTMKAC 1 cut(s) 83
AciI CCGC 4 cut(s) 144, 159, 190, 279
AcoI YGGCCR 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 333
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 2 cut(s) 119, 355
AfiI CCNNNNNNNGG 3 cut(s) 113, 235, 350
AjnI CCWGG 5 cut(s) 8, 99, 228, 234, 318
AluBI AGCT 2 cut(s) 187, 314
AluI AGCT 2 cut(s) 187, 314
AlwNI CAGNNNCTG 1 cut(s) 235
AoxI GGCC 4 cut(s) 30, 48, 231, 295
ApeKI GCWGC 2 cut(s) 153, 192
Asp718I GGTACC 2 cut(s) 117, 353
AspLEI GCGC 2 cut(s) 92, 242
AspS9I GGNCC 2 cut(s) 133, 232
AsuC2I CCSGG 1 cut(s) 219
AvaII GGWCC 1 cut(s) 133
BanI GGYRCC 3 cut(s) 103, 117, 353
BanII GRGCYC 1 cut(s) 62
BbvI GCAGC 2 cut(s) 140, 179
BccI CCATC 2 cut(s) 148, 170
BceAI ACGGC 1 cut(s) 45
BcgI CGANNNNNNTGC 2 cut(s) 63, 97
BciT130I CCWGG 5 cut(s) 10, 101, 230, 236, 320
BclI TGATCA 1 cut(s) 301
BcnI CCSGG 1 cut(s) 219
BfoI RGCGCY 1 cut(s) 243
BfuAI ACCTGC 2 cut(s) 95, 158
BisI GCNGC 3 cut(s) 154, 193, 280
BlsI GCNGC 3 cut(s) 155, 194, 281
Bme1390I CCNGG 6 cut(s) 10, 101, 219, 230, 236, 320
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 2 cut(s) 133, 232
BmiI GGNNCC 4 cut(s) 7, 105, 119, 355
BmrFI CCNGG 6 cut(s) 10, 101, 219, 230, 236, 320
BpuMI CCSGG 1 cut(s) 219
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 8 cut(s) 33, 69, 174, 217, 234, 235, 252, 319
BsaXI ACNNNNNCTCC 2 cut(s) 325, 355
Bsc4I CCNNNNNNNGG 3 cut(s) 113, 235, 350
Bse1I ACTGG 1 cut(s) 340
BseBI CCWGG 5 cut(s) 10, 101, 230, 236, 320
BseDI CCNNGG 8 cut(s) 33, 69, 174, 217, 234, 235, 252, 319
BseGI GGATG 1 cut(s) 140
BseLI CCNNNNNNNGG 3 cut(s) 113, 235, 350
BseMII CTCAG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 340
BseXI GCAGC 2 cut(s) 140, 179
BseYI CCCAGC 1 cut(s) 183
BsgI GTGCAG 2 cut(s) 132, 139
BshFI GGCC 4 cut(s) 32, 50, 233, 297
BshNI GGYRCC 3 cut(s) 103, 117, 353
BsiSI CCGG 1 cut(s) 219
BslI CCNNNNNNNGG 3 cut(s) 113, 235, 350
BsnI GGCC 4 cut(s) 32, 50, 233, 297
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 1 cut(s) 301
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 4 cut(s) 144, 159, 190, 279
BspANI GGCC 4 cut(s) 32, 50, 233, 297
BspCNI CTCAG 1 cut(s) 273
BspLI GGNNCC 4 cut(s) 7, 105, 119, 355
BspMI ACCTGC 2 cut(s) 95, 158
BspT107I GGYRCC 3 cut(s) 103, 117, 353
BsrI ACTGG 1 cut(s) 340
BssECI CCNNGG 8 cut(s) 33, 69, 174, 217, 234, 235, 252, 319
BssMI GATC 1 cut(s) 301
BssNI GRCGYC 1 cut(s) 282
BssT1I CCWWGG 2 cut(s) 33, 69
Bst2UI CCWGG 5 cut(s) 10, 101, 230, 236, 320
Bst4CI ACNGT 1 cut(s) 175
BstACI GRCGYC 1 cut(s) 282
BstC8I GCNNGC 2 cut(s) 62, 277
BstDEI CTNAG 1 cut(s) 260
BstDSI CCRYGG 2 cut(s) 33, 174
BstENI CCTNNNNNAGG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 140
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 2 cut(s) 92, 242
BstKTI GATC 1 cut(s) 304
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 2 cut(s) 198, 239
BstNI CCWGG 5 cut(s) 10, 101, 230, 236, 320
BstSCI CCNGG 6 cut(s) 8, 99, 217, 228, 234, 318
BstV1I GCAGC 2 cut(s) 140, 179
BsuRI GGCC 4 cut(s) 32, 50, 233, 297
BtgI CCRYGG 2 cut(s) 33, 174
BtsCI GGATG 1 cut(s) 140
BtsIMutI CAGTG 2 cut(s) 23, 311
BveI ACCTGC 2 cut(s) 95, 158
Cac8I GCNNGC 2 cut(s) 62, 277
CaiI CAGNNNCTG 1 cut(s) 235
CfoI GCGC 2 cut(s) 92, 242
Cfr13I GGNCC 2 cut(s) 133, 232
CseI GACGC 1 cut(s) 271
CsiI ACCWGGT 1 cut(s) 99
Csp6I GTAC 2 cut(s) 118, 354
CviAII CATG 1 cut(s) 34
CviJI RGCY 9 cut(s) 32, 50, 60, 179, 187, 233, 257, 297, 314
CviKI_1 RGCY 9 cut(s) 32, 50, 60, 179, 187, 233, 257, 297, 314
CviQI GTAC 2 cut(s) 118, 354
DdeI CTNAG 1 cut(s) 260
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
EaeI YGGCCR 1 cut(s) 30
EciI GGCGGA 1 cut(s) 133
Eco130I CCWWGG 2 cut(s) 33, 69
Eco24I GRGCYC 1 cut(s) 62
Eco47I GGWCC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 333
EcoNI CCTNNNNNAGG 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 232
EcoRII CCWGG 5 cut(s) 8, 99, 228, 234, 318
EcoT14I CCWWGG 2 cut(s) 33, 69
EcoT38I GRGCYC 1 cut(s) 62
ErhI CCWWGG 2 cut(s) 33, 69
FaeI CATG 1 cut(s) 37
FaiI YATR 3 cut(s) 17, 35, 371
FatI CATG 1 cut(s) 33
FbaI TGATCA 1 cut(s) 301
FblI GTMKAC 1 cut(s) 83
Fnu4HI GCNGC 3 cut(s) 154, 193, 280
FokI GGATG 1 cut(s) 127
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 3 cut(s) 154, 193, 280
GlaI GCGC 2 cut(s) 91, 241
GluI GCNGC 3 cut(s) 154, 193, 280
GsaI CCCAGC 1 cut(s) 187
HaeII RGCGCY 1 cut(s) 243
HaeIII GGCC 4 cut(s) 32, 50, 233, 297
HapII CCGG 1 cut(s) 219
HgaI GACGC 1 cut(s) 271
HhaI GCGC 2 cut(s) 92, 242
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 1 cut(s) 37
Hin6I GCGC 2 cut(s) 90, 240
HinP1I GCGC 2 cut(s) 90, 240
HincII GTYRAC 2 cut(s) 84, 286
HindII GTYRAC 2 cut(s) 84, 286
HinfI GANTC 1 cut(s) 80
HpaII CCGG 1 cut(s) 219
Hpy166II GTNNAC 2 cut(s) 84, 286
Hpy188I TCNGA 1 cut(s) 263
Hpy8I GTNNAC 2 cut(s) 84, 286
HpyAV CCTTC 1 cut(s) 357
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 4 cut(s) 113, 156, 201, 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 198, 239
HpyF3I CTNAG 1 cut(s) 260
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 1 cut(s) 37
HspAI GCGC 2 cut(s) 90, 240
KpnI GGTACC 2 cut(s) 121, 357
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 1 cut(s) 301
LmnI GCTCC 1 cut(s) 192
Lsp1109I GCAGC 2 cut(s) 140, 179
MabI ACCWGGT 1 cut(s) 99
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 1 cut(s) 264
MlyI GAGTC 1 cut(s) 89
MnlI CCTC 2 cut(s) 131, 262
MseI TTAA 2 cut(s) 374, 385
MspA1I CMGCKG 1 cut(s) 192
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 6 cut(s) 10, 101, 219, 230, 236, 320
MvaI CCWGG 5 cut(s) 10, 101, 230, 236, 320
MwoI GCNNNNNNNGC 2 cut(s) 198, 239
NciI CCSGG 1 cut(s) 219
NcoI CCATGG 1 cut(s) 33
NdeII GATC 1 cut(s) 301
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 4 cut(s) 7, 105, 119, 355
NmeAIII GCCGAG 2 cut(s) 233, 273
PaqCI CACCTGC 1 cut(s) 158
PasI CCCWGGG 1 cut(s) 235
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PflMI CCANNNNNTGG 1 cut(s) 235
PfoI TCCNGGA 1 cut(s) 8
PkrI GCNGC 3 cut(s) 155, 194, 281
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
Psp6I CCWGG 5 cut(s) 8, 99, 228, 234, 318
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 5 cut(s) 8, 99, 228, 234, 318
PspN4I GGNNCC 4 cut(s) 7, 105, 119, 355
PspPI GGNCC 2 cut(s) 133, 232
PstNI CAGNNNCTG 1 cut(s) 235
RsaI GTAC 2 cut(s) 119, 355
RsaNI GTAC 2 cut(s) 118, 354
SalI GTCGAC 1 cut(s) 82
SaqAI TTAA 2 cut(s) 374, 385
SatI GCNGC 3 cut(s) 154, 193, 280
Sau3AI GATC 1 cut(s) 301
Sau96I GGNCC 2 cut(s) 133, 232
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 6 cut(s) 10, 101, 219, 230, 236, 320
SduI GDGCHC 1 cut(s) 62
SetI ASST 9 cut(s) 89, 102, 123, 152, 189, 254, 316, 349, 355
SexAI ACCWGGT 1 cut(s) 99
SinI GGWCC 1 cut(s) 133
Sse9I AATT 1 cut(s) 264
SsiI CCGC 4 cut(s) 144, 159, 190, 279
StyD4I CCNGG 6 cut(s) 8, 99, 217, 228, 234, 318
StyI CCWWGG 2 cut(s) 33, 69
TaaI ACNGT 1 cut(s) 175
TaqI TCGA 1 cut(s) 83
TasI AATT 1 cut(s) 264
TauI GCSGC 1 cut(s) 282
Tru1I TTAA 2 cut(s) 374, 385
Tru9I TTAA 2 cut(s) 374, 385
TscAI CASTG 2 cut(s) 30, 311
TseI GCWGC 2 cut(s) 153, 192
TspGWI ACGGA 1 cut(s) 146
TspRI CASTG 2 cut(s) 30, 311
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 133
XagI CCTNNNNNAGG 1 cut(s) 111
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XmiI GTMKAC 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.