Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0013181

Physical Location & Seq

Genomic Coordinates Reverse (-)

11187357 .. 11189696

Gene Structure 2340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1081000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGGCTGCTACAGCATTTCCATGTTGGCGGTGGCCACGATGGTTGTGTTATTAAGTTTATTCGGATCGGCGGCCGGTCAAACGACGCCGGCTTGTGCTCAGGACCTTCTGCCGTGCGCGGACTACCTCAACAGCACAGCTCAACCATCTGCCACGTGCTGCACTGCCATCAAGCAGACGGTGGCCACCCAGCTTCCGTGTCTCTGCAACCTCTTTTACACTCCCGGACTTCTCGAGAGTTTGGGCAGCAACATCACTTCCGCTCTCAGAATCGCCAACGCTTGCGGCCAATCACTTGATACATCCAAATGCAAAACAGCCGTAGTTGCTCCTACACAATCCCCACCTGCAGCCACAGGAACACCGGGAAACGACGATGGCGGTTCCAGCAGGGTAGAGTGGACTGGATTTTTTGCTCCTCTCTTATTCTGGGCTTCTGTCATGCTATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

151

Amino Acids

15.46

Weight (kDa)

4.6

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	23 - 104	3.6e-13	Probable lipid transfer
Tryp_alpha_amyl	PF00234	34 - 101	3.2e-06	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62790 AT1G62790
fragaria_vesca	FvH4_5g00460
malus_domestica	MD04G1081000.v1.1 MD06G1064500.v1.1
prunus_persica	Prupe.5G077100_v2.0.a1
pyrus_communis	pycom06g05560
rosa_chinensis	RchiOBHm_Chr7g0202051
rosa_laevigata	RLG00000003629
rosa_multiflora	Rmu_co8366653.1_g000001 Rmu_sc0006592.1_g000005
rosa_roxburghii	Rroxscaffold_3G00254900
rosa_rugosa	Rorug07G0067700 Rorug07G0067700
rosa_samantha	Rh7AG195000 Rh7BG196400 Rh7DG201600
rosa_wichuraiana	Rw7G017080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	355
Acc36I	ACCTGC	1 cut(s)	355
AccBSI	CCGCTC	1 cut(s)	263
AccII	CGCG	1 cut(s)	119
AciI	CCGC	6 cut(s)	29, 71, 119, 261, 285, 381
AclWI	GGATC	1 cut(s)	73
AcoI	YGGCCR	4 cut(s)	33, 72, 183, 286
AcvI	CACGTG	1 cut(s)	156
AcyI	GRCGYC	1 cut(s)	86
AluBI	AGCT	2 cut(s)	140, 193
AluI	AGCT	2 cut(s)	140, 193
Alw21I	GWGCWC	1 cut(s)	100
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	1 cut(s)	73
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	4 cut(s)	33, 72, 183, 286
ApeKI	GCWGC	4 cut(s)	6, 159, 246, 350
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	103
AsuC2I	CCSGG	2 cut(s)	225, 366
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	103
BalI	TGGCCA	2 cut(s)	35, 185
BbrPI	CACGTG	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	3 cut(s)	146, 258, 362
BccI	CCATC	4 cut(s)	34, 154, 176, 371
BceAI	ACGGC	2 cut(s)	97, 305
BcnI	CCSGG	2 cut(s)	225, 366
BcoDI	GTCTC	1 cut(s)	206
BfmI	CTRYAG	2 cut(s)	10, 348
BfuAI	ACCTGC	1 cut(s)	355
BisI	GCNGC	6 cut(s)	7, 72, 160, 247, 286, 351
BlsI	GCNGC	6 cut(s)	8, 73, 161, 248, 287, 352
Bme1390I	CCNGG	2 cut(s)	225, 366
Bme18I	GGWCC	1 cut(s)	103
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	385
BmrFI	CCNGG	2 cut(s)	225, 366
Bpu10I	CCTNAGC	1 cut(s)	99
BpuMI	CCSGG	2 cut(s)	225, 366
BsaAI	YACGTR	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	86
Bse118I	RCCGGY	2 cut(s)	74, 88
Bse1I	ACTGG	1 cut(s)	409
BseGI	GGATG	1 cut(s)	302
BseMII	CTCAG	2 cut(s)	113, 280
BseNI	ACTGG	1 cut(s)	409
BseRI	GAGGAG	1 cut(s)	408
BseX3I	CGGCCG	1 cut(s)	72
BseXI	GCAGC	3 cut(s)	146, 258, 362
BseYI	CCCAGC	1 cut(s)	189
BsgI	GTGCAG	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	4 cut(s)	35, 74, 185, 288
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	4 cut(s)	75, 89, 225, 365
BsmAI	GTCTC	1 cut(s)	206
BsnI	GGCC	4 cut(s)	35, 74, 185, 288
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	1 cut(s)	65
BspACI	CCGC	6 cut(s)	29, 71, 119, 261, 285, 381
BspANI	GGCC	4 cut(s)	35, 74, 185, 288
BspCNI	CTCAG	2 cut(s)	112, 279
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	385
BspMAI	CTGCAG	1 cut(s)	352
BspMI	ACCTGC	1 cut(s)	355
BspPI	GGATC	1 cut(s)	73
BsrBI	CCGCTC	1 cut(s)	263
BsrFI	RCCGGY	2 cut(s)	74, 88
BsrI	ACTGG	1 cut(s)	409
BssAI	RCCGGY	2 cut(s)	74, 88
BssMI	GATC	1 cut(s)	65
BssNI	GRCGYC	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	181
BstACI	GRCGYC	1 cut(s)	86
BstBAI	YACGTR	1 cut(s)	156
BstC8I	GCNNGC	2 cut(s)	90, 283
BstDEI	CTNAG	2 cut(s)	99, 266
BstF5I	GGATG	1 cut(s)	302
BstFNI	CGCG	1 cut(s)	119
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	1 cut(s)	68
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	1 cut(s)	65
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 326, 387
BstSCI	CCNGG	2 cut(s)	223, 364
BstSFI	CTRYAG	2 cut(s)	10, 348
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	3 cut(s)	146, 258, 362
BstZI	CGGCCG	1 cut(s)	72
BsuRI	GGCC	4 cut(s)	35, 74, 185, 288
BtsCI	GGATG	1 cut(s)	302
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	162
BveI	ACCTGC	1 cut(s)	355
Cac8I	GCNNGC	2 cut(s)	90, 283
CfoI	GCGC	1 cut(s)	119
Cfr10I	RCCGGY	2 cut(s)	74, 88
Cfr13I	GGNCC	1 cut(s)	103
CseI	GACGC	1 cut(s)	94
CspCI	CAANNNNNGTGG	2 cut(s)	25, 60
CviAII	CATG	2 cut(s)	22, 442
DdeI	CTNAG	2 cut(s)	99, 266
DpnI	GATC	1 cut(s)	67
DpnII	GATC	1 cut(s)	65
EaeI	YGGCCR	4 cut(s)	33, 72, 183, 286
EagI	CGGCCG	1 cut(s)	72
EclXI	CGGCCG	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	103
Eco52I	CGGCCG	1 cut(s)	72
Eco72I	CACGTG	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	233
EcoO109I	RGGNCCY	1 cut(s)	103
FaeI	CATG	2 cut(s)	25, 445
FaiI	YATR	3 cut(s)	23, 443, 448
FatI	CATG	2 cut(s)	21, 441
Fnu4HI	GCNGC	6 cut(s)	7, 72, 160, 247, 286, 351
FokI	GGATG	1 cut(s)	289
Fsp4HI	GCNGC	6 cut(s)	7, 72, 160, 247, 286, 351
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	6 cut(s)	7, 72, 160, 247, 286, 351
GsaI	CCCAGC	1 cut(s)	193
HaeIII	GGCC	4 cut(s)	35, 74, 185, 288
HapII	CCGG	4 cut(s)	75, 89, 225, 365
HgaI	GACGC	1 cut(s)	94
HhaI	GCGC	1 cut(s)	119
Hin1I	GRCGYC	1 cut(s)	86
Hin1II	CATG	2 cut(s)	25, 445
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HinfI	GANTC	1 cut(s)	270
HpaII	CCGG	4 cut(s)	75, 89, 225, 365
Hpy166II	GTNNAC	1 cut(s)	402
Hpy188I	TCNGA	2 cut(s)	65, 269
Hpy188III	TCNNGA	3 cut(s)	101, 233, 235
Hpy8I	GTNNAC	1 cut(s)	402
Hpy99I	CGWCG	2 cut(s)	88, 377
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	4 cut(s)	162, 207, 312, 350
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 326, 387
HpyF3I	CTNAG	2 cut(s)	99, 266
HpySE526I	ACGT	1 cut(s)	155
Hsp92I	GRCGYC	1 cut(s)	86
Hsp92II	CATG	2 cut(s)	25, 445
HspAI	GCGC	1 cut(s)	117
KroI	GCCGGC	1 cut(s)	88
KroNI	GCCGGC	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	65
LmnI	GCTCC	2 cut(s)	334, 421
Lsp1109I	GCAGC	3 cut(s)	146, 258, 362
MaeII	ACGT	1 cut(s)	155
MalI	GATC	1 cut(s)	67
MbiI	CCGCTC	1 cut(s)	263
MboI	GATC	1 cut(s)	65
MhlI	GDGCHC	1 cut(s)	100
MlsI	TGGCCA	2 cut(s)	35, 185
MluNI	TGGCCA	2 cut(s)	35, 185
MnlI	CCTC	3 cut(s)	137, 221, 429
Mox20I	TGGCCA	2 cut(s)	35, 185
MroNI	GCCGGC	1 cut(s)	88
MscI	TGGCCA	2 cut(s)	35, 185
MseI	TTAA	1 cut(s)	53
MslI	CAYNNNNRTG	2 cut(s)	20, 307
Msp20I	TGGCCA	2 cut(s)	35, 185
MspI	CCGG	4 cut(s)	75, 89, 225, 365
MspR9I	CCNGG	2 cut(s)	225, 366
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	3 cut(s)	12, 326, 387
NaeI	GCCGGC	1 cut(s)	90
NciI	CCSGG	2 cut(s)	225, 366
NdeII	GATC	1 cut(s)	65
NgoMIV	GCCGGC	1 cut(s)	88
NlaIII	CATG	2 cut(s)	25, 445
NlaIV	GGNNCC	1 cut(s)	385
PaeR7I	CTCGAG	1 cut(s)	233
PaqCI	CACCTGC	1 cut(s)	355
PdiI	GCCGGC	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	270
PfoI	TCCNGGA	1 cut(s)	223
PkrI	GCNGC	6 cut(s)	8, 73, 161, 248, 287, 352
PmaCI	CACGTG	1 cut(s)	156
PmlI	CACGTG	1 cut(s)	156
Ppu21I	YACGTR	1 cut(s)	156
PpuMI	RGGWCCY	1 cut(s)	103
Psp5II	RGGWCCY	1 cut(s)	103
PspCI	CACGTG	1 cut(s)	156
PspFI	CCCAGC	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	385
PspPI	GGNCC	1 cut(s)	103
PspPPI	RGGWCCY	1 cut(s)	103
PstI	CTGCAG	1 cut(s)	352
RseI	CAYNNNNRTG	2 cut(s)	20, 307
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	6 cut(s)	7, 72, 160, 247, 286, 351
Sau3AI	GATC	1 cut(s)	65
Sau96I	GGNCC	1 cut(s)	103
ScrFI	CCNGG	2 cut(s)	225, 366
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	7 cut(s)	108, 129, 142, 158, 195, 213, 349
SfcI	CTRYAG	2 cut(s)	10, 348
Sfr274I	CTCGAG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	103
SlaI	CTCGAG	1 cut(s)	233
SmiMI	CAYNNNNRTG	2 cut(s)	20, 307
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SsiI	CCGC	6 cut(s)	29, 71, 119, 261, 285, 381
StyD4I	CCNGG	2 cut(s)	223, 364
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	1 cut(s)	158
TaqI	TCGA	1 cut(s)	234
TauI	GCSGC	2 cut(s)	74, 288
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	1 cut(s)	169
TseI	GCWGC	4 cut(s)	6, 159, 246, 350
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XhoI	CTCGAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.