Rw7G017080

lipid transfer-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0013181
Physical Location & Seq
Reverse (-)
17703309 .. 17705835
2527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G017080.1

Sequence Viewer

Length: 450 bp
ATGGGTTCCTGGAACATATCCACACTGACGGCCATGGTGGTTCTGGTGGCCTTGTTGGGCTCGCCAACCAAGGCACAAGAGTCGACCTGCGCTAATGACCTGGCGCCTTGTGCAGGCTACCTCAACAACACGGACCAACCATCCACCACCTGCTGCACCGCCATCAAACAGACCGTGGCTACCCAGCTCCGCTGCCTGTGCAATCTCTATTTTACCCCCGGACTTCTCCAGGTCCTGGGCGCTAACATCACCTCGGCTCTCAGAATTGCCAACGCTTGCGGCGTCGACTCTGTCGGTGTTGATCAGTGCAAAGCTATCCTGGGTCAAGCACCAGCTACTTCTCCACCTTCAGCTGTACCGGGAGGTGATGGTGGTAGTGGTTCGGGCAAGATTGGGTGGACCGGACTTCCTGCTCTGCTCTTATTCTGGGTTTCCGTCATGTTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

149

Amino Acids

15.21

Weight (kDa)

5.97

Isoelectric Point (pI)

47.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 12 - 103 8.5e-14 Probable lipid transfer
Tryp_alpha_amyl PF00234 32 - 97 1.3e-06 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62790 AT1G62790
fragaria_vesca FvH4_5g00460
malus_domestica MD04G1081000.v1.1 MD06G1064500.v1.1
prunus_persica Prupe.5G077100_v2.0.a1
pyrus_communis pycom06g05560
rosa_chinensis RchiOBHm_Chr7g0202051
rosa_laevigata RLG00000003629
rosa_multiflora Rmu_co8366653.1_g000001 Rmu_sc0006592.1_g000005
rosa_roxburghii Rroxscaffold_3G00254900
rosa_rugosa Rorug07G0067700 Rorug07G0067700
rosa_samantha Rh7AG195000 Rh7BG196400 Rh7DG201600
rosa_wichuraiana Rw7G017080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 158
Acc36I ACCTGC 2 cut(s) 95, 158
AccB1I GGYRCC 1 cut(s) 103
AccB7I CCANNNNNTGG 1 cut(s) 235
AccI GTMKAC 2 cut(s) 83, 285
AciI CCGC 3 cut(s) 159, 190, 279
AcoI YGGCCR 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 333
AcyI GRCGYC 2 cut(s) 104, 282
AfaI GTAC 1 cut(s) 357
AfiI CCNNNNNNNGG 2 cut(s) 113, 235
AjnI CCWGG 5 cut(s) 8, 99, 228, 234, 318
AluBI AGCT 4 cut(s) 187, 314, 335, 353
AluI AGCT 4 cut(s) 187, 314, 335, 353
AlwNI CAGNNNCTG 1 cut(s) 235
AoxI GGCC 2 cut(s) 30, 48
ApeKI GCWGC 2 cut(s) 153, 192
AspLEI GCGC 3 cut(s) 92, 106, 242
AspS9I GGNCC 3 cut(s) 133, 232, 399
AsuC2I CCSGG 2 cut(s) 219, 360
AsuHPI GGTGA 2 cut(s) 241, 377
AvaII GGWCC 3 cut(s) 133, 232, 399
BanI GGYRCC 1 cut(s) 103
BanII GRGCYC 1 cut(s) 62
BbvI GCAGC 2 cut(s) 140, 179
BccI CCATC 3 cut(s) 148, 170, 362
BceAI ACGGC 1 cut(s) 45
BcgI CGANNNNNNTGC 2 cut(s) 63, 97
BciT130I CCWGG 5 cut(s) 10, 101, 230, 236, 320
BclI TGATCA 1 cut(s) 301
BcnI CCSGG 2 cut(s) 219, 360
BfoI RGCGCY 2 cut(s) 107, 243
BfuAI ACCTGC 2 cut(s) 95, 158
BisI GCNGC 3 cut(s) 154, 193, 280
BlsI GCNGC 3 cut(s) 155, 194, 281
Bme1390I CCNGG 7 cut(s) 10, 101, 219, 230, 236, 320, 360
Bme18I GGWCC 3 cut(s) 133, 232, 399
BmgT120I GGNCC 3 cut(s) 133, 232, 399
BmiI GGNNCC 2 cut(s) 7, 105
BmrFI CCNGG 7 cut(s) 10, 101, 219, 230, 236, 320, 360
BpmI CTGGAG 1 cut(s) 212
BpuMI CCSGG 2 cut(s) 219, 360
BsaHI GRCGYC 2 cut(s) 104, 282
BsaJI CCNNGG 7 cut(s) 33, 69, 174, 217, 235, 252, 319
BsaWI WCCGGW 1 cut(s) 401
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 235
BseBI CCWGG 5 cut(s) 10, 101, 230, 236, 320
BseDI CCNNGG 7 cut(s) 33, 69, 174, 217, 235, 252, 319
BseGI GGATG 1 cut(s) 140
BseLI CCNNNNNNNGG 2 cut(s) 113, 235
BseMII CTCAG 1 cut(s) 274
BseXI GCAGC 2 cut(s) 140, 179
BseYI CCCAGC 1 cut(s) 183
BsgI GTGCAG 2 cut(s) 132, 139
BshFI GGCC 2 cut(s) 32, 50
BshNI GGYRCC 1 cut(s) 103
BsiSI CCGG 3 cut(s) 219, 359, 402
BslI CCNNNNNNNGG 2 cut(s) 113, 235
BsnI GGCC 2 cut(s) 32, 50
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 1 cut(s) 301
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 3 cut(s) 159, 190, 279
BspANI GGCC 2 cut(s) 32, 50
BspCNI CTCAG 1 cut(s) 273
BspLI GGNNCC 2 cut(s) 7, 105
BspMI ACCTGC 2 cut(s) 95, 158
BspT107I GGYRCC 1 cut(s) 103
BssECI CCNNGG 7 cut(s) 33, 69, 174, 217, 235, 252, 319
BssMI GATC 1 cut(s) 301
BssNI GRCGYC 2 cut(s) 104, 282
BssT1I CCWWGG 2 cut(s) 33, 69
Bst2UI CCWGG 5 cut(s) 10, 101, 230, 236, 320
Bst4CI ACNGT 1 cut(s) 175
BstACI GRCGYC 2 cut(s) 104, 282
BstC8I GCNNGC 3 cut(s) 62, 115, 277
BstDEI CTNAG 1 cut(s) 260
BstDSI CCRYGG 2 cut(s) 33, 174
BstENI CCTNNNNNAGG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 140
BstH2I RGCGCY 2 cut(s) 107, 243
BstHHI GCGC 3 cut(s) 92, 106, 242
BstKTI GATC 1 cut(s) 304
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 2 cut(s) 110, 198
BstNI CCWGG 5 cut(s) 10, 101, 230, 236, 320
BstSCI CCNGG 7 cut(s) 8, 99, 217, 228, 234, 318, 358
BstV1I GCAGC 2 cut(s) 140, 179
BsuRI GGCC 2 cut(s) 32, 50
BtgI CCRYGG 2 cut(s) 33, 174
BtsCI GGATG 1 cut(s) 140
BtsIMutI CAGTG 2 cut(s) 23, 311
BveI ACCTGC 2 cut(s) 95, 158
Cac8I GCNNGC 3 cut(s) 62, 115, 277
CaiI CAGNNNCTG 1 cut(s) 235
CfoI GCGC 3 cut(s) 92, 106, 242
Cfr13I GGNCC 3 cut(s) 133, 232, 399
CseI GACGC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 356
CviAII CATG 2 cut(s) 34, 439
CviQI GTAC 1 cut(s) 356
DdeI CTNAG 1 cut(s) 260
DinI GGCGCC 1 cut(s) 105
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
EaeI YGGCCR 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 33, 69
Eco24I GRGCYC 1 cut(s) 62
Eco47I GGWCC 3 cut(s) 133, 232, 399
Eco57I CTGAAG 1 cut(s) 333
EcoNI CCTNNNNNAGG 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 232
EcoRII CCWGG 5 cut(s) 8, 99, 228, 234, 318
EcoT14I CCWWGG 2 cut(s) 33, 69
EcoT38I GRGCYC 1 cut(s) 62
EgeI GGCGCC 1 cut(s) 105
EheI GGCGCC 1 cut(s) 105
ErhI CCWWGG 2 cut(s) 33, 69
FaeI CATG 2 cut(s) 37, 442
FaiI YATR 3 cut(s) 17, 35, 440
FatI CATG 2 cut(s) 33, 438
FbaI TGATCA 1 cut(s) 301
FblI GTMKAC 2 cut(s) 83, 285
Fnu4HI GCNGC 3 cut(s) 154, 193, 280
FokI GGATG 1 cut(s) 127
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 3 cut(s) 154, 193, 280
GlaI GCGC 3 cut(s) 91, 105, 241
GluI GCNGC 3 cut(s) 154, 193, 280
GsaI CCCAGC 1 cut(s) 187
GsuI CTGGAG 1 cut(s) 212
HaeII RGCGCY 2 cut(s) 107, 243
HaeIII GGCC 2 cut(s) 32, 50
HapII CCGG 3 cut(s) 219, 359, 402
HgaI GACGC 1 cut(s) 271
HhaI GCGC 3 cut(s) 92, 106, 242
Hin1I GRCGYC 2 cut(s) 104, 282
Hin1II CATG 2 cut(s) 37, 442
Hin6I GCGC 3 cut(s) 90, 104, 240
HinP1I GCGC 3 cut(s) 90, 104, 240
HincII GTYRAC 2 cut(s) 84, 286
HindII GTYRAC 2 cut(s) 84, 286
HinfI GANTC 2 cut(s) 80, 287
HpaII CCGG 3 cut(s) 219, 359, 402
HphI GGTGA 2 cut(s) 241, 377
Hpy166II GTNNAC 3 cut(s) 84, 286, 399
Hpy188I TCNGA 1 cut(s) 263
Hpy8I GTNNAC 3 cut(s) 84, 286, 399
Hpy99I CGWCG 1 cut(s) 287
HpyAV CCTTC 1 cut(s) 357
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 4 cut(s) 113, 156, 201, 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 198
HpyF3I CTNAG 1 cut(s) 260
Hsp92I GRCGYC 2 cut(s) 104, 282
Hsp92II CATG 2 cut(s) 37, 442
HspAI GCGC 3 cut(s) 90, 104, 240
KasI GGCGCC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 1 cut(s) 301
LmnI GCTCC 1 cut(s) 192
Lsp1109I GCAGC 2 cut(s) 140, 179
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 1 cut(s) 264
Mly113I GGCGCC 1 cut(s) 104
MlyI GAGTC 2 cut(s) 89, 281
MnlI CCTC 3 cut(s) 131, 262, 356
MspA1I CMGCKG 2 cut(s) 192, 353
MspI CCGG 3 cut(s) 219, 359, 402
MspR9I CCNGG 7 cut(s) 10, 101, 219, 230, 236, 320, 360
MvaI CCWGG 5 cut(s) 10, 101, 230, 236, 320
MwoI GCNNNNNNNGC 2 cut(s) 110, 198
NarI GGCGCC 1 cut(s) 104
NciI CCSGG 2 cut(s) 219, 360
NcoI CCATGG 1 cut(s) 33
NdeII GATC 1 cut(s) 301
NlaIII CATG 2 cut(s) 37, 442
NlaIV GGNNCC 2 cut(s) 7, 105
NmeAIII GCCGAG 1 cut(s) 233
PaqCI CACCTGC 1 cut(s) 158
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PflFI GACNNNGTC 1 cut(s) 290
PflMI CCANNNNNTGG 1 cut(s) 235
PfoI TCCNGGA 1 cut(s) 8
PkrI GCNGC 3 cut(s) 155, 194, 281
PleI GAGTC 2 cut(s) 88, 281
PluTI GGCGCC 1 cut(s) 107
PpsI GAGTC 2 cut(s) 88, 281
PpuMI RGGWCCY 1 cut(s) 232
Psp5II RGGWCCY 1 cut(s) 232
Psp6I CCWGG 5 cut(s) 8, 99, 228, 234, 318
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 5 cut(s) 8, 99, 228, 234, 318
PspN4I GGNNCC 2 cut(s) 7, 105
PspPI GGNCC 3 cut(s) 133, 232, 399
PspPPI RGGWCCY 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 235
PsyI GACNNNGTC 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 1 cut(s) 357
RsaNI GTAC 1 cut(s) 356
SalI GTCGAC 2 cut(s) 82, 284
SatI GCNGC 3 cut(s) 154, 193, 280
Sau3AI GATC 1 cut(s) 301
Sau96I GGNCC 3 cut(s) 133, 232, 399
SchI GAGTC 2 cut(s) 89, 281
ScrFI CCNGG 7 cut(s) 10, 101, 219, 230, 236, 320, 360
SduI GDGCHC 1 cut(s) 62
SfoI GGCGCC 1 cut(s) 105
SinI GGWCC 3 cut(s) 133, 232, 399
Sse9I AATT 1 cut(s) 264
SsiI CCGC 3 cut(s) 159, 190, 279
SspDI GGCGCC 1 cut(s) 103
StyD4I CCNGG 7 cut(s) 8, 99, 217, 228, 234, 318, 358
StyI CCWWGG 2 cut(s) 33, 69
TaaI ACNGT 1 cut(s) 175
TaqI TCGA 2 cut(s) 83, 285
TasI AATT 1 cut(s) 264
TauI GCSGC 1 cut(s) 282
TscAI CASTG 2 cut(s) 30, 311
TseI GCWGC 2 cut(s) 153, 192
TspGWI ACGGA 2 cut(s) 146, 424
TspRI CASTG 2 cut(s) 30, 311
Tth111I GACNNNGTC 1 cut(s) 290
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 3 cut(s) 133, 232, 399
XagI CCTNNNNNAGG 1 cut(s) 111
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XmiI GTMKAC 2 cut(s) 83, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.