Rh7AG195000

lipid transfer-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0013181
Physical Location & Seq
Reverse (-)
17496796 .. 17498940
2145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG195000.1

Sequence Viewer

Length: 447 bp
ATGGGTTCCTGGAACATATCCACACTGACGGCCATGGTGGTTCTGGTGGCCTTGTTGGGCTCGCCAACCAAGGCACAAGAGTCGACCTGCGCTAATGACCTGGTGCCTTGTGCAAACTACCTCAACAACACGGACCAACCATCCACCACCTGCTGCACCGCCATCAAACAGACCGTGGCTACCCAGCTCCGCTGCCTGTGCAATCTCTATTTTACCCCCGGACTTCTCCAGGCCGTGGGCGCTAACACCACCTCGGCTCTCAGAATTGCCAACGCTTGCGGCGTCGACTCTGTCGGTGTTGATCAGTGCAAAGCTATCCTGGGAGCACCAACTGCTTCTCCACCTTCAGCTGTACCGGGAGGTGATGGTAGCAGTGGTTCGGGCAGGATTGCATGGACCGGACTCCCTGCTCTGCTCTTATTCTGGGCTTCCGTCATGTATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

148

Amino Acids

15.18

Weight (kDa)

5.97

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 12 - 103 2.6e-14 Probable lipid transfer
Tryp_alpha_amyl PF00234 32 - 97 1.5e-06 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62790 AT1G62790
fragaria_vesca FvH4_5g00460
malus_domestica MD04G1081000.v1.1 MD06G1064500.v1.1
prunus_persica Prupe.5G077100_v2.0.a1
pyrus_communis pycom06g05560
rosa_chinensis RchiOBHm_Chr7g0202051
rosa_laevigata RLG00000003629
rosa_multiflora Rmu_co8366653.1_g000001 Rmu_sc0006592.1_g000005
rosa_roxburghii Rroxscaffold_3G00254900
rosa_rugosa Rorug07G0067700 Rorug07G0067700
rosa_samantha Rh7AG195000 Rh7BG196400 Rh7DG201600
rosa_wichuraiana Rw7G017080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 158
Acc36I ACCTGC 2 cut(s) 95, 158
AccB1I GGYRCC 1 cut(s) 103
AccB7I CCANNNNNTGG 1 cut(s) 235
AccI GTMKAC 2 cut(s) 83, 285
AciI CCGC 3 cut(s) 159, 190, 279
AcoI YGGCCR 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 330
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 1 cut(s) 354
AfiI CCNNNNNNNGG 1 cut(s) 235
AjnI CCWGG 4 cut(s) 8, 99, 228, 318
AluBI AGCT 3 cut(s) 187, 314, 350
AluI AGCT 3 cut(s) 187, 314, 350
Alw21I GWGCWC 1 cut(s) 328
AoxI GGCC 3 cut(s) 30, 48, 231
ApeKI GCWGC 2 cut(s) 153, 192
AspLEI GCGC 2 cut(s) 92, 242
AspS9I GGNCC 2 cut(s) 133, 396
AsuC2I CCSGG 2 cut(s) 219, 357
AsuHPI GGTGA 1 cut(s) 374
AvaII GGWCC 2 cut(s) 133, 396
BanI GGYRCC 1 cut(s) 103
BanII GRGCYC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 328
BbvI GCAGC 2 cut(s) 140, 179
BccI CCATC 3 cut(s) 148, 170, 359
BceAI ACGGC 2 cut(s) 45, 218
BcgI CGANNNNNNTGC 2 cut(s) 63, 97
BciT130I CCWGG 4 cut(s) 10, 101, 230, 320
BclI TGATCA 1 cut(s) 301
BcnI CCSGG 2 cut(s) 219, 357
BfoI RGCGCY 1 cut(s) 243
BfuAI ACCTGC 2 cut(s) 95, 158
BisI GCNGC 3 cut(s) 154, 193, 280
BlsI GCNGC 3 cut(s) 155, 194, 281
Bme1390I CCNGG 6 cut(s) 10, 101, 219, 230, 320, 357
Bme18I GGWCC 2 cut(s) 133, 396
BmgT120I GGNCC 2 cut(s) 133, 396
BmiI GGNNCC 2 cut(s) 7, 105
BmrFI CCNGG 6 cut(s) 10, 101, 219, 230, 320, 357
BpmI CTGGAG 1 cut(s) 212
BpuMI CCSGG 2 cut(s) 219, 357
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 7 cut(s) 33, 69, 174, 217, 234, 252, 319
BsaWI WCCGGW 1 cut(s) 398
BsaXI ACNNNNNCTCC 2 cut(s) 322, 352
Bsc4I CCNNNNNNNGG 1 cut(s) 235
BseBI CCWGG 4 cut(s) 10, 101, 230, 320
BseDI CCNNGG 7 cut(s) 33, 69, 174, 217, 234, 252, 319
BseGI GGATG 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 274
BseXI GCAGC 2 cut(s) 140, 179
BseYI CCCAGC 1 cut(s) 183
BsgI GTGCAG 1 cut(s) 139
BshFI GGCC 3 cut(s) 32, 50, 233
BshNI GGYRCC 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 328
BsiSI CCGG 3 cut(s) 219, 356, 399
BslI CCNNNNNNNGG 1 cut(s) 235
BsnI GGCC 3 cut(s) 32, 50, 233
Bsp1286I GDGCHC 2 cut(s) 62, 328
Bsp143I GATC 1 cut(s) 301
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 3 cut(s) 159, 190, 279
BspANI GGCC 3 cut(s) 32, 50, 233
BspCNI CTCAG 1 cut(s) 273
BspLI GGNNCC 2 cut(s) 7, 105
BspMI ACCTGC 2 cut(s) 95, 158
BspT107I GGYRCC 1 cut(s) 103
BssECI CCNNGG 7 cut(s) 33, 69, 174, 217, 234, 252, 319
BssMI GATC 1 cut(s) 301
BssNI GRCGYC 1 cut(s) 282
BssT1I CCWWGG 2 cut(s) 33, 69
Bst2UI CCWGG 4 cut(s) 10, 101, 230, 320
Bst4CI ACNGT 1 cut(s) 175
BstACI GRCGYC 1 cut(s) 282
BstAPI GCANNNNNTGC 1 cut(s) 332
BstC8I GCNNGC 2 cut(s) 62, 277
BstDEI CTNAG 1 cut(s) 260
BstDSI CCRYGG 3 cut(s) 33, 174, 234
BstF5I GGATG 1 cut(s) 140
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 2 cut(s) 92, 242
BstKTI GATC 1 cut(s) 304
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 3 cut(s) 198, 239, 332
BstNI CCWGG 4 cut(s) 10, 101, 230, 320
BstSCI CCNGG 6 cut(s) 8, 99, 217, 228, 318, 355
BstV1I GCAGC 2 cut(s) 140, 179
BsuRI GGCC 3 cut(s) 32, 50, 233
BtgI CCRYGG 3 cut(s) 33, 174, 234
BtsCI GGATG 1 cut(s) 140
BtsI GCAGTG 1 cut(s) 379
BtsIMutI CAGTG 3 cut(s) 23, 311, 379
BveI ACCTGC 2 cut(s) 95, 158
Cac8I GCNNGC 2 cut(s) 62, 277
CfoI GCGC 2 cut(s) 92, 242
Cfr13I GGNCC 2 cut(s) 133, 396
CseI GACGC 1 cut(s) 271
CsiI ACCWGGT 1 cut(s) 99
Csp6I GTAC 1 cut(s) 353
CviAII CATG 3 cut(s) 34, 393, 436
CviQI GTAC 1 cut(s) 353
DdeI CTNAG 1 cut(s) 260
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
EaeI YGGCCR 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 33, 69
Eco24I GRGCYC 1 cut(s) 62
Eco47I GGWCC 2 cut(s) 133, 396
Eco57I CTGAAG 1 cut(s) 330
EcoRII CCWGG 4 cut(s) 8, 99, 228, 318
EcoT14I CCWWGG 2 cut(s) 33, 69
EcoT38I GRGCYC 1 cut(s) 62
ErhI CCWWGG 2 cut(s) 33, 69
FaeI CATG 3 cut(s) 37, 396, 439
FaiI YATR 4 cut(s) 17, 35, 394, 437
FatI CATG 3 cut(s) 33, 392, 435
FbaI TGATCA 1 cut(s) 301
FblI GTMKAC 2 cut(s) 83, 285
Fnu4HI GCNGC 3 cut(s) 154, 193, 280
FokI GGATG 1 cut(s) 127
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 3 cut(s) 154, 193, 280
GlaI GCGC 2 cut(s) 91, 241
GluI GCNGC 3 cut(s) 154, 193, 280
GsaI CCCAGC 1 cut(s) 187
GsuI CTGGAG 1 cut(s) 212
HaeII RGCGCY 1 cut(s) 243
HaeIII GGCC 3 cut(s) 32, 50, 233
HapII CCGG 3 cut(s) 219, 356, 399
HgaI GACGC 1 cut(s) 271
HhaI GCGC 2 cut(s) 92, 242
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 3 cut(s) 37, 396, 439
Hin6I GCGC 2 cut(s) 90, 240
HinP1I GCGC 2 cut(s) 90, 240
HincII GTYRAC 2 cut(s) 84, 286
HindII GTYRAC 2 cut(s) 84, 286
HinfI GANTC 3 cut(s) 80, 287, 402
HpaII CCGG 3 cut(s) 219, 356, 399
HphI GGTGA 1 cut(s) 374
Hpy166II GTNNAC 2 cut(s) 84, 286
Hpy188I TCNGA 1 cut(s) 263
Hpy8I GTNNAC 2 cut(s) 84, 286
Hpy99I CGWCG 1 cut(s) 287
HpyAV CCTTC 1 cut(s) 354
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 5 cut(s) 113, 156, 201, 309, 392
HpyF10VI GCNNNNNNNGC 3 cut(s) 198, 239, 332
HpyF3I CTNAG 1 cut(s) 260
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 3 cut(s) 37, 396, 439
HspAI GCGC 2 cut(s) 90, 240
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 1 cut(s) 301
LmnI GCTCC 2 cut(s) 192, 323
Lsp1109I GCAGC 2 cut(s) 140, 179
MabI ACCWGGT 1 cut(s) 99
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MhlI GDGCHC 2 cut(s) 62, 328
MluCI AATT 1 cut(s) 264
MlyI GAGTC 3 cut(s) 89, 281, 396
MnlI CCTC 3 cut(s) 131, 262, 353
MspA1I CMGCKG 2 cut(s) 192, 350
MspI CCGG 3 cut(s) 219, 356, 399
MspR9I CCNGG 6 cut(s) 10, 101, 219, 230, 320, 357
MvaI CCWGG 4 cut(s) 10, 101, 230, 320
MwoI GCNNNNNNNGC 3 cut(s) 198, 239, 332
NciI CCSGG 2 cut(s) 219, 357
NcoI CCATGG 1 cut(s) 33
NdeII GATC 1 cut(s) 301
NlaIII CATG 3 cut(s) 37, 396, 439
NlaIV GGNNCC 2 cut(s) 7, 105
NmeAIII GCCGAG 1 cut(s) 233
PaqCI CACCTGC 1 cut(s) 158
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PflFI GACNNNGTC 1 cut(s) 290
PflMI CCANNNNNTGG 1 cut(s) 235
PfoI TCCNGGA 1 cut(s) 8
PkrI GCNGC 3 cut(s) 155, 194, 281
PleI GAGTC 3 cut(s) 88, 281, 396
PpsI GAGTC 3 cut(s) 88, 281, 396
Psp6I CCWGG 4 cut(s) 8, 99, 228, 318
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 4 cut(s) 8, 99, 228, 318
PspN4I GGNNCC 2 cut(s) 7, 105
PspPI GGNCC 2 cut(s) 133, 396
PsrI GAACNNNNNNTAC 2 cut(s) 361, 393
PsyI GACNNNGTC 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 350
RsaI GTAC 1 cut(s) 354
RsaNI GTAC 1 cut(s) 353
SalI GTCGAC 2 cut(s) 82, 284
SatI GCNGC 3 cut(s) 154, 193, 280
Sau3AI GATC 1 cut(s) 301
Sau96I GGNCC 2 cut(s) 133, 396
SchI GAGTC 3 cut(s) 89, 281, 396
ScrFI CCNGG 6 cut(s) 10, 101, 219, 230, 320, 357
SduI GDGCHC 2 cut(s) 62, 328
SexAI ACCWGGT 1 cut(s) 99
SinI GGWCC 2 cut(s) 133, 396
Sse9I AATT 1 cut(s) 264
SsiI CCGC 3 cut(s) 159, 190, 279
StyD4I CCNGG 6 cut(s) 8, 99, 217, 228, 318, 355
StyI CCWWGG 2 cut(s) 33, 69
TaaI ACNGT 1 cut(s) 175
TaqI TCGA 2 cut(s) 83, 285
TasI AATT 1 cut(s) 264
TauI GCSGC 1 cut(s) 282
TscAI CASTG 3 cut(s) 30, 311, 379
TseI GCWGC 2 cut(s) 153, 192
TspGWI ACGGA 2 cut(s) 146, 421
TspRI CASTG 3 cut(s) 30, 311, 379
Tth111I GACNNNGTC 1 cut(s) 290
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 2 cut(s) 133, 396
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XmiI GTMKAC 2 cut(s) 83, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.