Rmu_sc0006592.1_g000005

lipid transfer-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006592.1
OG0013181
Physical Location & Seq
Reverse (-)
26717 .. 30187
3471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006592.1_g000005.1.cds

Sequence Viewer

Length: 744 bp
atgggttcctgcaacatttccacactgacggccatggtggttgtggtggccttgttgggctctatggcgagcccaaccaaggctgagcagacctgcgctaatgacctgatgccttgtgcagactacctcaacaacaaggaccaaccatccaccacctgctgcaccgccatcaaacagaccgtggataccaagcttgcctgcctgtgcaatctctattttacccccggacttctccagtccctgggcgctaacgtcacctcggctctcagaattgccaacgcttgcggcgtcgactctgtcggtgttgatcagtgcaaagctatcctgggtcaagcaccagctacttctccaccttcagctgtaccgggaggtgatggtagcagtggttcgggcaagattgggtggatcggactccctgctctgctcttattctgggcttccgtcattttgagtagagaagaaggagaggacttggcgactcctccgttaaccccccctcaagcccaatcccggcaactcctccttcgctgccactcctcccgctggaatatggaagagcgattggcttctcaagcaccagaccaaagtcgctatcgtcattgccatccttatctcctcgggatcaggtttcaggcaatctggcccggtagctcgagctctgctctgaaatcaacaatcacaagggtctcatctgcagccggagcttcaaattggtcctcgtcgtcttccatccaactccactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

247

Amino Acids

25.94

Weight (kDa)

8.01

Isoelectric Point (pI)

61.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62790 AT1G62790
fragaria_vesca FvH4_5g00460
malus_domestica MD04G1081000.v1.1 MD06G1064500.v1.1
prunus_persica Prupe.5G077100_v2.0.a1
pyrus_communis pycom06g05560
rosa_chinensis RchiOBHm_Chr7g0202051
rosa_laevigata RLG00000003629
rosa_multiflora Rmu_co8366653.1_g000001 Rmu_sc0006592.1_g000005
rosa_roxburghii Rroxscaffold_3G00254900
rosa_rugosa Rorug07G0067700 Rorug07G0067700
rosa_samantha Rh7AG195000 Rh7BG196400 Rh7DG201600
rosa_wichuraiana Rw7G017080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 164
Acc36I ACCTGC 2 cut(s) 101, 164
AccB7I CCANNNNNTGG 1 cut(s) 241
AccI GTMKAC 1 cut(s) 291
AciI CCGC 3 cut(s) 165, 285, 541
AclWI GGATC 2 cut(s) 413, 629
AcoI YGGCCR 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 339
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 1 cut(s) 363
AfiI CCNNNNNNNGG 4 cut(s) 79, 241, 510, 543
AgsI TTSAA 1 cut(s) 708
AjnI CCWGG 2 cut(s) 240, 324
AluBI AGCT 7 cut(s) 193, 320, 341, 359, 651, 657, 704
AluI AGCT 7 cut(s) 193, 320, 341, 359, 651, 657, 704
Alw21I GWGCWC 1 cut(s) 659
Alw26I GTCTC 1 cut(s) 691
AlwI GGATC 2 cut(s) 413, 629
AlwNI CAGNNNCTG 1 cut(s) 241
Ama87I CYCGRG 2 cut(s) 617, 652
AoxI GGCC 3 cut(s) 30, 48, 641
ApeKI GCWGC 3 cut(s) 159, 528, 695
AspLEI GCGC 2 cut(s) 98, 248
AspS9I GGNCC 3 cut(s) 139, 642, 714
AsuC2I CCSGG 4 cut(s) 225, 366, 511, 645
AsuHPI GGTGA 2 cut(s) 247, 383
AvaI CYCGRG 2 cut(s) 617, 652
AvaII GGWCC 2 cut(s) 139, 714
BanII GRGCYC 3 cut(s) 62, 74, 659
BbsI GAAGAC 1 cut(s) 717
Bbv12I GWGCWC 1 cut(s) 659
BbvI GCAGC 3 cut(s) 146, 515, 707
BccI CCATC 5 cut(s) 154, 176, 368, 612, 737
BceAI ACGGC 1 cut(s) 45
BciT130I CCWGG 2 cut(s) 242, 326
BciVI GTATCC 1 cut(s) 178
BclI TGATCA 1 cut(s) 307
BcnI CCSGG 4 cut(s) 225, 366, 511, 645
BcoDI GTCTC 1 cut(s) 691
BfaI CTAG 1 cut(s) 742
BfmI CTRYAG 1 cut(s) 693
BfoI RGCGCY 1 cut(s) 249
BfuAI ACCTGC 2 cut(s) 101, 164
BfuI GTATCC 1 cut(s) 178
BisI GCNGC 4 cut(s) 160, 286, 529, 696
BlpI GCTNAGC 1 cut(s) 84
BlsI GCNGC 4 cut(s) 161, 287, 530, 697
Bme1390I CCNGG 6 cut(s) 225, 242, 326, 366, 511, 645
Bme18I GGWCC 2 cut(s) 139, 714
BmeT110I CYCGRG 2 cut(s) 617, 652
BmgT120I GGNCC 3 cut(s) 139, 642, 714
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 6 cut(s) 225, 242, 326, 366, 511, 645
BmsI GCATC 1 cut(s) 99
BoxI GACNNNNGTC 1 cut(s) 585
BpiI GAAGAC 1 cut(s) 717
BplI GAGNNNNNCTC 2 cut(s) 646, 678
BpmI CTGGAG 1 cut(s) 218
Bpu1102I GCTNAGC 1 cut(s) 84
BpuEI CTTGAG 2 cut(s) 483, 555
BpuMI CCSGG 4 cut(s) 225, 366, 511, 645
BsaHI GRCGYC 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 691
BsaJI CCNNGG 9 cut(s) 33, 78, 180, 223, 240, 241, 258, 325, 616
Bsc4I CCNNNNNNNGG 4 cut(s) 79, 241, 510, 543
Bse1I ACTGG 1 cut(s) 235
Bse3DI GCAATG 1 cut(s) 598
BseBI CCWGG 2 cut(s) 242, 326
BseDI CCNNGG 9 cut(s) 33, 78, 180, 223, 240, 241, 258, 325, 616
BseGI GGATG 3 cut(s) 146, 604, 729
BseLI CCNNNNNNNGG 4 cut(s) 79, 241, 510, 543
BseMI GCAATG 1 cut(s) 598
BseMII CTCAG 2 cut(s) 75, 280
BseNI ACTGG 1 cut(s) 235
BseRI GAGGAG 4 cut(s) 471, 509, 526, 605
BseXI GCAGC 3 cut(s) 146, 515, 707
BsgI GTGCAG 2 cut(s) 138, 145
BshFI GGCC 3 cut(s) 32, 50, 643
BsiHKAI GWGCWC 1 cut(s) 659
BsiHKCI CYCGRG 2 cut(s) 617, 652
BsiSI CCGG 5 cut(s) 225, 365, 511, 645, 699
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 4 cut(s) 79, 241, 510, 543
BsmAI GTCTC 1 cut(s) 691
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 3 cut(s) 32, 50, 643
Bso31I GGTCTC 1 cut(s) 691
BsoBI CYCGRG 2 cut(s) 617, 652
Bsp1286I GDGCHC 3 cut(s) 62, 74, 659
Bsp143I GATC 3 cut(s) 307, 405, 621
Bsp1720I GCTNAGC 1 cut(s) 84
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 3 cut(s) 165, 285, 541
BspANI GGCC 3 cut(s) 32, 50, 643
BspCNI CTCAG 2 cut(s) 76, 279
BspLI GGNNCC 1 cut(s) 7
BspMAI CTGCAG 1 cut(s) 697
BspMI ACCTGC 2 cut(s) 101, 164
BspPI GGATC 2 cut(s) 413, 629
BspQI GCTCTTC 1 cut(s) 549
BspTNI GGTCTC 1 cut(s) 691
BsrDI GCAATG 1 cut(s) 598
BsrI ACTGG 1 cut(s) 235
BssECI CCNNGG 9 cut(s) 33, 78, 180, 223, 240, 241, 258, 325, 616
BssMI GATC 3 cut(s) 307, 405, 621
BssNI GRCGYC 1 cut(s) 288
BssT1I CCWWGG 2 cut(s) 33, 78
Bst2UI CCWGG 2 cut(s) 242, 326
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 549
BstACI GRCGYC 1 cut(s) 288
BstC8I GCNNGC 4 cut(s) 70, 195, 199, 283
BstDEI CTNAG 2 cut(s) 84, 266
BstDSI CCRYGG 2 cut(s) 33, 180
BstF5I GGATG 3 cut(s) 146, 604, 729
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 2 cut(s) 98, 248
BstKTI GATC 3 cut(s) 310, 408, 624
BstMAI GTCTC 1 cut(s) 691
BstMBI GATC 3 cut(s) 307, 405, 621
BstMWI GCNNNNNNNGC 2 cut(s) 572, 701
BstNI CCWGG 2 cut(s) 242, 326
BstPAI GACNNNNGTC 1 cut(s) 585
BstSCI CCNGG 6 cut(s) 223, 240, 324, 364, 509, 643
BstSFI CTRYAG 1 cut(s) 693
BstV1I GCAGC 3 cut(s) 146, 515, 707
BstV2I GAAGAC 1 cut(s) 717
BsuI GTATCC 1 cut(s) 178
BsuRI GGCC 3 cut(s) 32, 50, 643
BtgI CCRYGG 2 cut(s) 33, 180
BtsCI GGATG 3 cut(s) 146, 604, 729
BtsI GCAGTG 1 cut(s) 388
BtsIMutI CAGTG 3 cut(s) 23, 317, 388
BveI ACCTGC 2 cut(s) 101, 164
Cac8I GCNNGC 4 cut(s) 70, 195, 199, 283
CaiI CAGNNNCTG 1 cut(s) 241
CfoI GCGC 2 cut(s) 98, 248
Cfr13I GGNCC 3 cut(s) 139, 642, 714
CseI GACGC 1 cut(s) 277
Csp6I GTAC 1 cut(s) 362
CviAII CATG 1 cut(s) 34
CviQI GTAC 1 cut(s) 362
DdeI CTNAG 2 cut(s) 84, 266
DpnI GATC 3 cut(s) 309, 407, 623
DpnII GATC 3 cut(s) 307, 405, 621
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 549
EarI CTCTTC 1 cut(s) 549
Ecl136II GAGCTC 1 cut(s) 657
Eco130I CCWWGG 2 cut(s) 33, 78
Eco24I GRGCYC 3 cut(s) 62, 74, 659
Eco31I GGTCTC 1 cut(s) 691
Eco47I GGWCC 2 cut(s) 139, 714
Eco53kI GAGCTC 1 cut(s) 657
Eco57I CTGAAG 1 cut(s) 339
Eco88I CYCGRG 2 cut(s) 617, 652
EcoICRI GAGCTC 1 cut(s) 657
EcoRII CCWGG 2 cut(s) 240, 324
EcoT14I CCWWGG 2 cut(s) 33, 78
EcoT38I GRGCYC 3 cut(s) 62, 74, 659
ErhI CCWWGG 2 cut(s) 33, 78
FaeI CATG 1 cut(s) 37
FaiI YATR 3 cut(s) 35, 65, 551
FaqI GGGAC 1 cut(s) 223
FatI CATG 1 cut(s) 33
FauI CCCGC 1 cut(s) 548
FbaI TGATCA 1 cut(s) 307
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 4 cut(s) 160, 286, 529, 696
FokI GGATG 3 cut(s) 133, 591, 716
FriOI GRGCYC 3 cut(s) 62, 74, 659
Fsp4HI GCNGC 4 cut(s) 160, 286, 529, 696
FspBI CTAG 1 cut(s) 742
GlaI GCGC 2 cut(s) 97, 247
GluI GCNGC 4 cut(s) 160, 286, 529, 696
GsuI CTGGAG 1 cut(s) 218
HaeII RGCGCY 1 cut(s) 249
HaeIII GGCC 3 cut(s) 32, 50, 643
HapII CCGG 5 cut(s) 225, 365, 511, 645, 699
HgaI GACGC 1 cut(s) 277
HhaI GCGC 2 cut(s) 98, 248
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 1 cut(s) 37
Hin6I GCGC 2 cut(s) 96, 246
HinP1I GCGC 2 cut(s) 96, 246
HincII GTYRAC 2 cut(s) 292, 489
HindII GTYRAC 2 cut(s) 292, 489
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 3 cut(s) 293, 411, 478
HpaI GTTAAC 1 cut(s) 489
HpaII CCGG 5 cut(s) 225, 365, 511, 645, 699
HphI GGTGA 2 cut(s) 247, 383
Hpy166II GTNNAC 2 cut(s) 292, 489
Hpy188I TCNGA 3 cut(s) 269, 410, 666
Hpy188III TCNNGA 1 cut(s) 619
Hpy8I GTNNAC 2 cut(s) 292, 489
Hpy99I CGWCG 2 cut(s) 293, 724
HpyAV CCTTC 3 cut(s) 363, 455, 533
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 6 cut(s) 12, 119, 162, 207, 315, 695
HpyF10VI GCNNNNNNNGC 2 cut(s) 572, 701
HpyF3I CTNAG 2 cut(s) 84, 266
HpySE526I ACGT 1 cut(s) 252
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 1 cut(s) 37
HspAI GCGC 2 cut(s) 96, 246
Ksp22I TGATCA 1 cut(s) 307
KspAI GTTAAC 1 cut(s) 489
Kzo9I GATC 3 cut(s) 307, 405, 621
LguI GCTCTTC 1 cut(s) 549
LmnI GCTCC 1 cut(s) 701
Lsp1109I GCAGC 3 cut(s) 146, 515, 707
LweI GCATC 1 cut(s) 99
MaeI CTAG 1 cut(s) 742
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 253
MalI GATC 3 cut(s) 309, 407, 623
MboI GATC 3 cut(s) 307, 405, 621
MboII GAAGA 3 cut(s) 470, 566, 717
MhlI GDGCHC 3 cut(s) 62, 74, 659
MluCI AATT 2 cut(s) 270, 709
MlyI GAGTC 3 cut(s) 287, 405, 472
MseI TTAA 1 cut(s) 488
MspA1I CMGCKG 2 cut(s) 359, 543
MspI CCGG 5 cut(s) 225, 365, 511, 645, 699
MspR9I CCNGG 6 cut(s) 225, 242, 326, 366, 511, 645
MvaI CCWGG 2 cut(s) 242, 326
MwoI GCNNNNNNNGC 2 cut(s) 572, 701
NciI CCSGG 4 cut(s) 225, 366, 511, 645
NcoI CCATGG 1 cut(s) 33
NdeII GATC 3 cut(s) 307, 405, 621
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 1 cut(s) 7
NmeAIII GCCGAG 1 cut(s) 239
NmuCI GTSAC 1 cut(s) 253
PaeR7I CTCGAG 1 cut(s) 652
PaqCI CACCTGC 1 cut(s) 164
PasI CCCWGGG 1 cut(s) 241
PciSI GCTCTTC 1 cut(s) 549
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PflFI GACNNNGTC 1 cut(s) 296
PflMI CCANNNNNTGG 1 cut(s) 241
PkrI GCNGC 4 cut(s) 161, 287, 530, 697
PleI GAGTC 3 cut(s) 287, 405, 472
PpsI GAGTC 3 cut(s) 287, 405, 472
PshAI GACNNNNGTC 1 cut(s) 585
Psp124BI GAGCTC 1 cut(s) 659
Psp6I CCWGG 2 cut(s) 240, 324
PspGI CCWGG 2 cut(s) 240, 324
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 3 cut(s) 139, 642, 714
PspXI VCTCGAGB 1 cut(s) 652
PsrI GAACNNNNNNTAC 2 cut(s) 370, 402
PstI CTGCAG 1 cut(s) 697
PstNI CAGNNNCTG 1 cut(s) 241
PsyI GACNNNGTC 1 cut(s) 296
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
SacI GAGCTC 1 cut(s) 659
SalI GTCGAC 1 cut(s) 290
SapI GCTCTTC 1 cut(s) 549
SaqAI TTAA 1 cut(s) 488
SatI GCNGC 4 cut(s) 160, 286, 529, 696
Sau3AI GATC 3 cut(s) 307, 405, 621
Sau96I GGNCC 3 cut(s) 139, 642, 714
SchI GAGTC 3 cut(s) 287, 405, 472
ScrFI CCNGG 6 cut(s) 225, 242, 326, 366, 511, 645
SduI GDGCHC 3 cut(s) 62, 74, 659
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 1 cut(s) 693
Sfr274I CTCGAG 1 cut(s) 652
SinI GGWCC 2 cut(s) 139, 714
SlaI CTCGAG 1 cut(s) 652
SmlI CTYRAG 3 cut(s) 498, 570, 652
SmoI CTYRAG 3 cut(s) 498, 570, 652
Sse9I AATT 2 cut(s) 270, 709
SsiI CCGC 3 cut(s) 165, 285, 541
SspMI CTAG 1 cut(s) 742
SstI GAGCTC 1 cut(s) 659
StyD4I CCNGG 6 cut(s) 223, 240, 324, 364, 509, 643
StyI CCWWGG 2 cut(s) 33, 78
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 1 cut(s) 255
TaqI TCGA 2 cut(s) 291, 653
TasI AATT 2 cut(s) 270, 709
TauI GCSGC 1 cut(s) 288
Tru1I TTAA 1 cut(s) 488
Tru9I TTAA 1 cut(s) 488
TscAI CASTG 3 cut(s) 30, 317, 388
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 3 cut(s) 159, 528, 695
Tsp45I GTSAC 1 cut(s) 253
TspGWI ACGGA 2 cut(s) 430, 474
TspRI CASTG 3 cut(s) 30, 317, 388
Tth111I GACNNNGTC 1 cut(s) 296
Van91I CCANNNNNTGG 1 cut(s) 241
VpaK11BI GGWCC 2 cut(s) 139, 714
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XhoI CTCGAG 1 cut(s) 652
XmiI GTMKAC 1 cut(s) 291
XspI CTAG 1 cut(s) 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.