Rh7DG201600

lipid transfer-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0013181
Physical Location & Seq
Reverse (-)
19072576 .. 19075068
2493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG201600.1

Sequence Viewer

Length: 384 bp
ATGGGTTCCTGGAACATATCCACACTGACGGCCATGGTGGTTCTGGTGGCCTTGTTGGGCTCGCCAACCAAGGCACAAGAGTCGACCTGCGCTAATGACCTGGTGCCTTGTGCAAACTACCTCAACAACACGGACCAACCATCCACCACCTGCTGCACCGCCATCAAACAGACCGTGGCTACCCAGCTCCGCTGCCTGTGCAATCTCTATTTTACCCCCGGACTTCTCCAGGCCGTGGGCGCTAACACCACCTCGGCTCTCAGAATTGCCAACGCTTGCGGCGTCGACTCTGTCGGTGTTGATCAGTGCAAAGCTATCCTGGGAGCACCAACTGCTTCTCCACCTTCAGGTACCAAACTTTTTCTCATATTAAAATCCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

127

Amino Acids

13.14

Weight (kDa)

8.14

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 12 - 103 1.7e-14 Probable lipid transfer
Tryp_alpha_amyl PF00234 32 - 97 9.6e-07 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62790 AT1G62790
fragaria_vesca FvH4_5g00460
malus_domestica MD04G1081000.v1.1 MD06G1064500.v1.1
prunus_persica Prupe.5G077100_v2.0.a1
pyrus_communis pycom06g05560
rosa_chinensis RchiOBHm_Chr7g0202051
rosa_laevigata RLG00000003629
rosa_multiflora Rmu_co8366653.1_g000001 Rmu_sc0006592.1_g000005
rosa_roxburghii Rroxscaffold_3G00254900
rosa_rugosa Rorug07G0067700 Rorug07G0067700
rosa_samantha Rh7AG195000 Rh7BG196400 Rh7DG201600
rosa_wichuraiana Rw7G017080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 158
Acc36I ACCTGC 2 cut(s) 95, 158
Acc65I GGTACC 1 cut(s) 350
AccB1I GGYRCC 2 cut(s) 103, 350
AccB7I CCANNNNNTGG 1 cut(s) 235
AccI GTMKAC 2 cut(s) 83, 285
AciI CCGC 3 cut(s) 159, 190, 279
AcoI YGGCCR 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 330
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 1 cut(s) 352
AfiI CCNNNNNNNGG 2 cut(s) 235, 347
AjnI CCWGG 4 cut(s) 8, 99, 228, 318
AluBI AGCT 2 cut(s) 187, 314
AluI AGCT 2 cut(s) 187, 314
Alw21I GWGCWC 1 cut(s) 328
AoxI GGCC 3 cut(s) 30, 48, 231
ApeKI GCWGC 2 cut(s) 153, 192
Asp718I GGTACC 1 cut(s) 350
AspLEI GCGC 2 cut(s) 92, 242
AspS9I GGNCC 1 cut(s) 133
AsuC2I CCSGG 1 cut(s) 219
AvaII GGWCC 1 cut(s) 133
BanI GGYRCC 2 cut(s) 103, 350
BanII GRGCYC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 328
BbvI GCAGC 2 cut(s) 140, 179
BccI CCATC 2 cut(s) 148, 170
BceAI ACGGC 2 cut(s) 45, 218
BcgI CGANNNNNNTGC 2 cut(s) 63, 97
BciT130I CCWGG 4 cut(s) 10, 101, 230, 320
BclI TGATCA 1 cut(s) 301
BcnI CCSGG 1 cut(s) 219
BfoI RGCGCY 1 cut(s) 243
BfuAI ACCTGC 2 cut(s) 95, 158
BisI GCNGC 3 cut(s) 154, 193, 280
BlsI GCNGC 3 cut(s) 155, 194, 281
Bme1390I CCNGG 5 cut(s) 10, 101, 219, 230, 320
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 3 cut(s) 7, 105, 352
BmrFI CCNGG 5 cut(s) 10, 101, 219, 230, 320
BpmI CTGGAG 1 cut(s) 212
BpuMI CCSGG 1 cut(s) 219
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 7 cut(s) 33, 69, 174, 217, 234, 252, 319
BsaXI ACNNNNNCTCC 2 cut(s) 322, 352
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 347
BseBI CCWGG 4 cut(s) 10, 101, 230, 320
BseDI CCNNGG 7 cut(s) 33, 69, 174, 217, 234, 252, 319
BseGI GGATG 1 cut(s) 140
BseLI CCNNNNNNNGG 2 cut(s) 235, 347
BseMII CTCAG 1 cut(s) 274
BseXI GCAGC 2 cut(s) 140, 179
BseYI CCCAGC 1 cut(s) 183
BsgI GTGCAG 1 cut(s) 139
BshFI GGCC 3 cut(s) 32, 50, 233
BshNI GGYRCC 2 cut(s) 103, 350
BsiHKAI GWGCWC 1 cut(s) 328
BsiSI CCGG 1 cut(s) 219
BslI CCNNNNNNNGG 2 cut(s) 235, 347
BsnI GGCC 3 cut(s) 32, 50, 233
Bsp1286I GDGCHC 2 cut(s) 62, 328
Bsp143I GATC 1 cut(s) 301
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 3 cut(s) 159, 190, 279
BspANI GGCC 3 cut(s) 32, 50, 233
BspCNI CTCAG 1 cut(s) 273
BspLI GGNNCC 3 cut(s) 7, 105, 352
BspMI ACCTGC 2 cut(s) 95, 158
BspT107I GGYRCC 2 cut(s) 103, 350
BssECI CCNNGG 7 cut(s) 33, 69, 174, 217, 234, 252, 319
BssMI GATC 1 cut(s) 301
BssNI GRCGYC 1 cut(s) 282
BssT1I CCWWGG 2 cut(s) 33, 69
Bst2UI CCWGG 4 cut(s) 10, 101, 230, 320
Bst4CI ACNGT 1 cut(s) 175
BstACI GRCGYC 1 cut(s) 282
BstAPI GCANNNNNTGC 1 cut(s) 332
BstC8I GCNNGC 2 cut(s) 62, 277
BstDEI CTNAG 1 cut(s) 260
BstDSI CCRYGG 3 cut(s) 33, 174, 234
BstF5I GGATG 1 cut(s) 140
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 2 cut(s) 92, 242
BstKTI GATC 1 cut(s) 304
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 3 cut(s) 198, 239, 332
BstNI CCWGG 4 cut(s) 10, 101, 230, 320
BstSCI CCNGG 5 cut(s) 8, 99, 217, 228, 318
BstV1I GCAGC 2 cut(s) 140, 179
BsuRI GGCC 3 cut(s) 32, 50, 233
BtgI CCRYGG 3 cut(s) 33, 174, 234
BtsCI GGATG 1 cut(s) 140
BtsIMutI CAGTG 2 cut(s) 23, 311
BveI ACCTGC 2 cut(s) 95, 158
Cac8I GCNNGC 2 cut(s) 62, 277
CfoI GCGC 2 cut(s) 92, 242
Cfr13I GGNCC 1 cut(s) 133
CseI GACGC 1 cut(s) 271
CsiI ACCWGGT 1 cut(s) 99
Csp6I GTAC 1 cut(s) 351
CviAII CATG 1 cut(s) 34
CviJI RGCY 8 cut(s) 32, 50, 60, 179, 187, 233, 257, 314
CviKI_1 RGCY 8 cut(s) 32, 50, 60, 179, 187, 233, 257, 314
CviQI GTAC 1 cut(s) 351
DdeI CTNAG 1 cut(s) 260
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
EaeI YGGCCR 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 33, 69
Eco24I GRGCYC 1 cut(s) 62
Eco47I GGWCC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 330
EcoRII CCWGG 4 cut(s) 8, 99, 228, 318
EcoT14I CCWWGG 2 cut(s) 33, 69
EcoT38I GRGCYC 1 cut(s) 62
ErhI CCWWGG 2 cut(s) 33, 69
FaeI CATG 1 cut(s) 37
FaiI YATR 3 cut(s) 17, 35, 368
FatI CATG 1 cut(s) 33
FbaI TGATCA 1 cut(s) 301
FblI GTMKAC 2 cut(s) 83, 285
Fnu4HI GCNGC 3 cut(s) 154, 193, 280
FokI GGATG 1 cut(s) 127
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 3 cut(s) 154, 193, 280
GlaI GCGC 2 cut(s) 91, 241
GluI GCNGC 3 cut(s) 154, 193, 280
GsaI CCCAGC 1 cut(s) 187
GsuI CTGGAG 1 cut(s) 212
HaeII RGCGCY 1 cut(s) 243
HaeIII GGCC 3 cut(s) 32, 50, 233
HapII CCGG 1 cut(s) 219
HgaI GACGC 1 cut(s) 271
HhaI GCGC 2 cut(s) 92, 242
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 1 cut(s) 37
Hin6I GCGC 2 cut(s) 90, 240
HinP1I GCGC 2 cut(s) 90, 240
HincII GTYRAC 2 cut(s) 84, 286
HindII GTYRAC 2 cut(s) 84, 286
HinfI GANTC 2 cut(s) 80, 287
HpaII CCGG 1 cut(s) 219
Hpy166II GTNNAC 2 cut(s) 84, 286
Hpy188I TCNGA 1 cut(s) 263
Hpy8I GTNNAC 2 cut(s) 84, 286
Hpy99I CGWCG 1 cut(s) 287
HpyAV CCTTC 1 cut(s) 354
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 4 cut(s) 113, 156, 201, 309
HpyF10VI GCNNNNNNNGC 3 cut(s) 198, 239, 332
HpyF3I CTNAG 1 cut(s) 260
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 1 cut(s) 37
HspAI GCGC 2 cut(s) 90, 240
KpnI GGTACC 1 cut(s) 354
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 1 cut(s) 301
LmnI GCTCC 2 cut(s) 192, 323
Lsp1109I GCAGC 2 cut(s) 140, 179
MabI ACCWGGT 1 cut(s) 99
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MhlI GDGCHC 2 cut(s) 62, 328
MluCI AATT 1 cut(s) 264
MlyI GAGTC 2 cut(s) 89, 281
MnlI CCTC 2 cut(s) 131, 262
MseI TTAA 2 cut(s) 371, 382
MspA1I CMGCKG 1 cut(s) 192
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 5 cut(s) 10, 101, 219, 230, 320
MvaI CCWGG 4 cut(s) 10, 101, 230, 320
MwoI GCNNNNNNNGC 3 cut(s) 198, 239, 332
NciI CCSGG 1 cut(s) 219
NcoI CCATGG 1 cut(s) 33
NdeII GATC 1 cut(s) 301
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 3 cut(s) 7, 105, 352
NmeAIII GCCGAG 1 cut(s) 233
PaqCI CACCTGC 1 cut(s) 158
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PflFI GACNNNGTC 1 cut(s) 290
PflMI CCANNNNNTGG 1 cut(s) 235
PfoI TCCNGGA 1 cut(s) 8
PkrI GCNGC 3 cut(s) 155, 194, 281
PleI GAGTC 2 cut(s) 88, 281
PpsI GAGTC 2 cut(s) 88, 281
Psp6I CCWGG 4 cut(s) 8, 99, 228, 318
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 4 cut(s) 8, 99, 228, 318
PspN4I GGNNCC 3 cut(s) 7, 105, 352
PspPI GGNCC 1 cut(s) 133
PsyI GACNNNGTC 1 cut(s) 290
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
SalI GTCGAC 2 cut(s) 82, 284
SaqAI TTAA 2 cut(s) 371, 382
SatI GCNGC 3 cut(s) 154, 193, 280
Sau3AI GATC 1 cut(s) 301
Sau96I GGNCC 1 cut(s) 133
SchI GAGTC 2 cut(s) 89, 281
ScrFI CCNGG 5 cut(s) 10, 101, 219, 230, 320
SduI GDGCHC 2 cut(s) 62, 328
SetI ASST 9 cut(s) 89, 102, 123, 152, 189, 254, 316, 346, 352
SexAI ACCWGGT 1 cut(s) 99
SinI GGWCC 1 cut(s) 133
Sse9I AATT 1 cut(s) 264
SsiI CCGC 3 cut(s) 159, 190, 279
StyD4I CCNGG 5 cut(s) 8, 99, 217, 228, 318
StyI CCWWGG 2 cut(s) 33, 69
TaaI ACNGT 1 cut(s) 175
TaqI TCGA 2 cut(s) 83, 285
TasI AATT 1 cut(s) 264
TauI GCSGC 1 cut(s) 282
Tru1I TTAA 2 cut(s) 371, 382
Tru9I TTAA 2 cut(s) 371, 382
TscAI CASTG 2 cut(s) 30, 311
TseI GCWGC 2 cut(s) 153, 192
TspGWI ACGGA 1 cut(s) 146
TspRI CASTG 2 cut(s) 30, 311
Tth111I GACNNNGTC 1 cut(s) 290
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 133
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XmiI GTMKAC 2 cut(s) 83, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.