Prupe.5G077100_v2.0.a1

lipid transfer-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013181
Physical Location & Seq
Forward (+)
9109495 .. 9111518
2024 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G077100.1

Sequence Viewer

Length: 459 bp
ATGGGCAGCTCCAAAATGTTCATGTTGGCCATGGCCATGGCGGTTGTGGTGTTGAGCATGACCAGTTGCTTCGGACAGTCAAACGAAACGCCGGGTTGTGCTCAGGACCTGTTGCCCTGCGCAGACTACCTCAAGAACACGAAACCTCCGCCCACCACGTGTTGCACCGCCATCAAACAGACCGTTGCCACCCAGCTCGCCTGCCTCTGCAACCTCTTCTTCACGCCTGGACTTCTCGAACTTTATGGTGGCAACACCACTTCGGGTCTCAGAATCGCCACCGCCTGCGGCGAAACAATGGACGTCAACAAATGCAAAGCTGCCATTGGTGCTCCCACTCCACAATCCCCTCCTGCAACCCCAGGTGCACCAAAAGCTGACGATGGAGGTTCAAGCAAGATAGCGTGGGCTGGGTTTTCTGCTCTGCTCTTATTTTGGGCTTCTGTCATGTTCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

153

Amino Acids

15.73

Weight (kDa)

7.42

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62790 AT1G62790
fragaria_vesca FvH4_5g00460
malus_domestica MD04G1081000.v1.1 MD06G1064500.v1.1
prunus_persica Prupe.5G077100_v2.0.a1
pyrus_communis pycom06g05560
rosa_chinensis RchiOBHm_Chr7g0202051
rosa_laevigata RLG00000003629
rosa_multiflora Rmu_co8366653.1_g000001 Rmu_sc0006592.1_g000005
rosa_roxburghii Rroxscaffold_3G00254900
rosa_rugosa Rorug07G0067700 Rorug07G0067700
rosa_samantha Rh7AG195000 Rh7BG196400 Rh7DG201600
rosa_wichuraiana Rw7G017080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 306
Acc16I TGCGCA 1 cut(s) 121
AciI CCGC 5 cut(s) 41, 149, 168, 282, 288
AcoI YGGCCR 2 cut(s) 27, 33
AcvI CACGTG 1 cut(s) 159
AcyI GRCGYC 1 cut(s) 303
AdeI CACNNNGTG 1 cut(s) 159
AflIII ACRYGT 1 cut(s) 158
AgsI TTSAA 1 cut(s) 393
AjnI CCWGG 2 cut(s) 226, 361
AluBI AGCT 4 cut(s) 9, 196, 320, 377
AluI AGCT 4 cut(s) 9, 196, 320, 377
Alw21I GWGCWC 3 cut(s) 103, 334, 370
Alw26I GTCTC 1 cut(s) 272
Alw44I GTGCAC 1 cut(s) 366
AlwNI CAGNNNCTG 1 cut(s) 109
AoxI GGCC 2 cut(s) 27, 33
ApaLI GTGCAC 1 cut(s) 366
ApeKI GCWGC 2 cut(s) 6, 320
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 93
AvaII GGWCC 1 cut(s) 106
BaeGI GKGCMC 1 cut(s) 370
BalI TGGCCA 2 cut(s) 29, 35
BbrPI CACGTG 1 cut(s) 159
Bbv12I GWGCWC 3 cut(s) 103, 334, 370
BbvI GCAGC 2 cut(s) 18, 307
BccI CCATC 2 cut(s) 179, 377
BciT130I CCWGG 2 cut(s) 228, 363
BcnI CCSGG 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 272
BisI GCNGC 3 cut(s) 7, 289, 321
BlsI GCNGC 3 cut(s) 8, 290, 322
Bme1390I CCNGG 3 cut(s) 93, 228, 363
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BmrFI CCNGG 3 cut(s) 93, 228, 363
Bpu10I CCTNAGC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 93
BsaAI YACGTR 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 3 cut(s) 30, 36, 361
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bse1I ACTGG 1 cut(s) 63
BseBI CCWGG 2 cut(s) 228, 363
BseDI CCNNGG 3 cut(s) 30, 36, 361
BseMII CTCAG 2 cut(s) 116, 283
BseNI ACTGG 1 cut(s) 63
BseSI GKGCMC 1 cut(s) 370
BseXI GCAGC 2 cut(s) 18, 307
BseYI CCCAGC 2 cut(s) 192, 410
BshFI GGCC 2 cut(s) 29, 35
BsiHKAI GWGCWC 3 cut(s) 103, 334, 370
BsiSI CCGG 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 272
BsnI GGCC 2 cut(s) 29, 35
Bso31I GGTCTC 1 cut(s) 272
Bsp1286I GDGCHC 3 cut(s) 103, 334, 370
Bsp19I CCATGG 2 cut(s) 30, 36
BspACI CCGC 5 cut(s) 41, 149, 168, 282, 288
BspANI GGCC 2 cut(s) 29, 35
BspCNI CTCAG 2 cut(s) 115, 282
BspTNI GGTCTC 1 cut(s) 272
BsrI ACTGG 1 cut(s) 63
BssECI CCNNGG 3 cut(s) 30, 36, 361
BssNI GRCGYC 1 cut(s) 303
BssT1I CCWWGG 2 cut(s) 30, 36
Bst2UI CCWGG 2 cut(s) 228, 363
Bst4CI ACNGT 2 cut(s) 78, 184
Bst6I CTCTTC 1 cut(s) 221
BstACI GRCGYC 1 cut(s) 303
BstBAI YACGTR 1 cut(s) 159
BstC8I GCNNGC 3 cut(s) 198, 202, 286
BstDEI CTNAG 2 cut(s) 102, 269
BstDSI CCRYGG 2 cut(s) 30, 36
BstHHI GCGC 1 cut(s) 122
BstMAI GTCTC 1 cut(s) 272
BstMWI GCNNNNNNNGC 2 cut(s) 329, 374
BstNI CCWGG 2 cut(s) 228, 363
BstSCI CCNGG 3 cut(s) 91, 226, 361
BstSLI GKGCMC 1 cut(s) 370
BstV1I GCAGC 2 cut(s) 18, 307
BstXI CCANNNNNNTGG 1 cut(s) 37
BsuRI GGCC 2 cut(s) 29, 35
BtgI CCRYGG 2 cut(s) 30, 36
Cac8I GCNNGC 3 cut(s) 198, 202, 286
CaiI CAGNNNCTG 1 cut(s) 109
CfoI GCGC 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 106
CviAII CATG 5 cut(s) 22, 31, 37, 58, 448
CviJI RGCY 8 cut(s) 9, 29, 35, 196, 320, 377, 410, 440
CviKI_1 RGCY 8 cut(s) 9, 29, 35, 196, 320, 377, 410, 440
DdeI CTNAG 2 cut(s) 102, 269
DraIII CACNNNGTG 1 cut(s) 159
EaeI YGGCCR 2 cut(s) 27, 33
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
EciI GGCGGA 1 cut(s) 138
Eco130I CCWWGG 2 cut(s) 30, 36
Eco31I GGTCTC 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 106
Eco72I CACGTG 1 cut(s) 159
EcoO109I RGGNCCY 1 cut(s) 106
EcoRII CCWGG 2 cut(s) 226, 361
EcoT14I CCWWGG 2 cut(s) 30, 36
ErhI CCWWGG 2 cut(s) 30, 36
FaeI CATG 5 cut(s) 25, 34, 40, 61, 451
FaiI YATR 6 cut(s) 23, 32, 38, 59, 246, 449
FatI CATG 5 cut(s) 21, 30, 36, 57, 447
Fnu4HI GCNGC 3 cut(s) 7, 289, 321
Fsp4HI GCNGC 3 cut(s) 7, 289, 321
FspI TGCGCA 1 cut(s) 121
GlaI GCGC 1 cut(s) 121
GluI GCNGC 3 cut(s) 7, 289, 321
GsaI CCCAGC 2 cut(s) 196, 414
HaeIII GGCC 2 cut(s) 29, 35
HapII CCGG 1 cut(s) 92
HhaI GCGC 1 cut(s) 122
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 5 cut(s) 25, 34, 40, 61, 451
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 1 cut(s) 273
HpaII CCGG 1 cut(s) 92
Hpy166II GTNNAC 2 cut(s) 307, 368
Hpy188I TCNGA 2 cut(s) 74, 272
Hpy188III TCNNGA 3 cut(s) 104, 133, 236
Hpy8I GTNNAC 2 cut(s) 307, 368
HpyCH4III ACNGT 2 cut(s) 78, 184
HpyCH4IV ACGT 2 cut(s) 158, 303
HpyCH4V TGCA 5 cut(s) 165, 210, 315, 356, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 374
HpyF3I CTNAG 2 cut(s) 102, 269
HpySE526I ACGT 2 cut(s) 158, 303
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 5 cut(s) 25, 34, 40, 61, 451
HspAI GCGC 1 cut(s) 120
LmnI GCTCC 2 cut(s) 14, 337
Lsp1109I GCAGC 2 cut(s) 18, 307
MaeII ACGT 2 cut(s) 158, 303
MboII GAAGA 2 cut(s) 208, 211
MhlI GDGCHC 3 cut(s) 103, 334, 370
MlsI TGGCCA 2 cut(s) 29, 35
MluNI TGGCCA 2 cut(s) 29, 35
MnlI CCTC 6 cut(s) 140, 156, 215, 224, 360, 380
Mox20I TGGCCA 2 cut(s) 29, 35
MscI TGGCCA 2 cut(s) 29, 35
MslI CAYNNNNRTG 1 cut(s) 35
Msp20I TGGCCA 2 cut(s) 29, 35
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 3 cut(s) 93, 228, 363
MvaI CCWGG 2 cut(s) 228, 363
MwoI GCNNNNNNNGC 2 cut(s) 329, 374
NciI CCSGG 1 cut(s) 93
NcoI CCATGG 2 cut(s) 30, 36
NlaIII CATG 5 cut(s) 25, 34, 40, 61, 451
NsbI TGCGCA 1 cut(s) 121
PfeI GAWTC 1 cut(s) 273
PkrI GCNGC 3 cut(s) 8, 290, 322
PmaCI CACGTG 1 cut(s) 159
PmlI CACGTG 1 cut(s) 159
Ppu21I YACGTR 1 cut(s) 159
PpuMI RGGWCCY 1 cut(s) 106
Psp5II RGGWCCY 1 cut(s) 106
Psp6I CCWGG 2 cut(s) 226, 361
PspCI CACGTG 1 cut(s) 159
PspFI CCCAGC 2 cut(s) 192, 410
PspGI CCWGG 2 cut(s) 226, 361
PspPI GGNCC 1 cut(s) 106
PspPPI RGGWCCY 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 109
RseI CAYNNNNRTG 1 cut(s) 35
SatI GCNGC 3 cut(s) 7, 289, 321
Sau96I GGNCC 1 cut(s) 106
ScrFI CCNGG 3 cut(s) 93, 228, 363
SduI GDGCHC 3 cut(s) 103, 334, 370
SinI GGWCC 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SsiI CCGC 5 cut(s) 41, 149, 168, 282, 288
StyD4I CCNGG 3 cut(s) 91, 226, 361
StyI CCWWGG 2 cut(s) 30, 36
TaaI ACNGT 2 cut(s) 78, 184
TaiI ACGT 2 cut(s) 161, 306
TaqI TCGA 1 cut(s) 237
TauI GCSGC 1 cut(s) 291
TfiI GAWTC 1 cut(s) 273
TseI GCWGC 2 cut(s) 6, 320
TspDTI ATGAA 1 cut(s) 10
VneI GTGCAC 1 cut(s) 366
VpaK11BI GGWCC 1 cut(s) 106
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
ZraI GACGTC 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.