Rmu_co8366653.1_g000001

lipid transfer-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8366653.1
OG0013181
Physical Location & Seq
Reverse (-)
1 .. 844
844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8366653.1_g000001.1.cds

Sequence Viewer

Length: 358 bp
atgggttcctgcaacatgtccacactgacggccatggtggttgtggtggccttgttgggctctatggcgagcccaaccaaggctgagcagacctgcgctaatgacctgatgccttgtgcagactacctcaacaacaaggaccaaccatccaccacctgctgcaccgccatcaaacagaccgtggataccaagcttgcctgcctgtgcaatctctattttacccccggacttctccagtccctgggcgctaacgtcacctcggctctcagaattgccaacgcttgcggcgtcgactctgtcggtgttgatcagtgcaaagctatcctgggtcaagcaccagctacttctccaccttcag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

119

Amino Acids

12.19

Weight (kDa)

4.92

Isoelectric Point (pI)

56.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62790 AT1G62790
fragaria_vesca FvH4_5g00460
malus_domestica MD04G1081000.v1.1 MD06G1064500.v1.1
prunus_persica Prupe.5G077100_v2.0.a1
pyrus_communis pycom06g05560
rosa_chinensis RchiOBHm_Chr7g0202051
rosa_laevigata RLG00000003629
rosa_multiflora Rmu_co8366653.1_g000001 Rmu_sc0006592.1_g000005
rosa_roxburghii Rroxscaffold_3G00254900
rosa_rugosa Rorug07G0067700 Rorug07G0067700
rosa_samantha Rh7AG195000 Rh7BG196400 Rh7DG201600
rosa_wichuraiana Rw7G017080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 164
Acc36I ACCTGC 2 cut(s) 101, 164
AccB7I CCANNNNNTGG 1 cut(s) 241
AccI GTMKAC 1 cut(s) 291
AciI CCGC 2 cut(s) 165, 285
AcoI YGGCCR 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 339
AcyI GRCGYC 1 cut(s) 288
AfiI CCNNNNNNNGG 2 cut(s) 79, 241
AflIII ACRYGT 1 cut(s) 15
AjnI CCWGG 2 cut(s) 240, 324
AluBI AGCT 3 cut(s) 193, 320, 341
AluI AGCT 3 cut(s) 193, 320, 341
AlwNI CAGNNNCTG 1 cut(s) 241
AoxI GGCC 2 cut(s) 30, 48
ApeKI GCWGC 1 cut(s) 159
AspLEI GCGC 2 cut(s) 98, 248
AspS9I GGNCC 1 cut(s) 139
AsuC2I CCSGG 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 247
AvaII GGWCC 1 cut(s) 139
BanII GRGCYC 2 cut(s) 62, 74
BbvI GCAGC 1 cut(s) 146
BccI CCATC 2 cut(s) 154, 176
BceAI ACGGC 1 cut(s) 45
BciT130I CCWGG 2 cut(s) 242, 326
BciVI GTATCC 1 cut(s) 178
BclI TGATCA 1 cut(s) 307
BcnI CCSGG 1 cut(s) 225
BfoI RGCGCY 1 cut(s) 249
BfuAI ACCTGC 2 cut(s) 101, 164
BfuI GTATCC 1 cut(s) 178
BisI GCNGC 2 cut(s) 160, 286
BlpI GCTNAGC 1 cut(s) 84
BlsI GCNGC 2 cut(s) 161, 287
Bme1390I CCNGG 3 cut(s) 225, 242, 326
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 3 cut(s) 225, 242, 326
BmsI GCATC 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 218
Bpu1102I GCTNAGC 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 288
BsaJI CCNNGG 8 cut(s) 33, 78, 180, 223, 240, 241, 258, 325
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 241
Bse1I ACTGG 1 cut(s) 235
BseBI CCWGG 2 cut(s) 242, 326
BseDI CCNNGG 8 cut(s) 33, 78, 180, 223, 240, 241, 258, 325
BseGI GGATG 1 cut(s) 146
BseLI CCNNNNNNNGG 2 cut(s) 79, 241
BseMII CTCAG 2 cut(s) 75, 280
BseNI ACTGG 1 cut(s) 235
BseXI GCAGC 1 cut(s) 146
BsgI GTGCAG 2 cut(s) 138, 145
BshFI GGCC 2 cut(s) 32, 50
BsiSI CCGG 1 cut(s) 225
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 2 cut(s) 79, 241
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 2 cut(s) 32, 50
Bsp1286I GDGCHC 2 cut(s) 62, 74
Bsp143I GATC 1 cut(s) 307
Bsp1720I GCTNAGC 1 cut(s) 84
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 2 cut(s) 165, 285
BspANI GGCC 2 cut(s) 32, 50
BspCNI CTCAG 2 cut(s) 76, 279
BspLI GGNNCC 1 cut(s) 7
BspMI ACCTGC 2 cut(s) 101, 164
BsrI ACTGG 1 cut(s) 235
BssECI CCNNGG 8 cut(s) 33, 78, 180, 223, 240, 241, 258, 325
BssMI GATC 1 cut(s) 307
BssNI GRCGYC 1 cut(s) 288
BssT1I CCWWGG 2 cut(s) 33, 78
Bst2UI CCWGG 2 cut(s) 242, 326
Bst4CI ACNGT 1 cut(s) 181
BstACI GRCGYC 1 cut(s) 288
BstC8I GCNNGC 4 cut(s) 70, 195, 199, 283
BstDEI CTNAG 2 cut(s) 84, 266
BstDSI CCRYGG 2 cut(s) 33, 180
BstF5I GGATG 1 cut(s) 146
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 2 cut(s) 98, 248
BstKTI GATC 1 cut(s) 310
BstMBI GATC 1 cut(s) 307
BstNI CCWGG 2 cut(s) 242, 326
BstNSI RCATGY 1 cut(s) 19
BstSCI CCNGG 3 cut(s) 223, 240, 324
BstV1I GCAGC 1 cut(s) 146
BsuI GTATCC 1 cut(s) 178
BsuRI GGCC 2 cut(s) 32, 50
BtgI CCRYGG 2 cut(s) 33, 180
BtsCI GGATG 1 cut(s) 146
BtsIMutI CAGTG 2 cut(s) 23, 317
BveI ACCTGC 2 cut(s) 101, 164
Cac8I GCNNGC 4 cut(s) 70, 195, 199, 283
CaiI CAGNNNCTG 1 cut(s) 241
CfoI GCGC 2 cut(s) 98, 248
Cfr13I GGNCC 1 cut(s) 139
CseI GACGC 1 cut(s) 277
CviAII CATG 2 cut(s) 16, 34
CviJI RGCY 9 cut(s) 32, 50, 60, 72, 83, 193, 263, 320, 341
CviKI_1 RGCY 9 cut(s) 32, 50, 60, 72, 83, 193, 263, 320, 341
DdeI CTNAG 2 cut(s) 84, 266
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
EaeI YGGCCR 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 33, 78
Eco24I GRGCYC 2 cut(s) 62, 74
Eco47I GGWCC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 339
EcoRII CCWGG 2 cut(s) 240, 324
EcoT14I CCWWGG 2 cut(s) 33, 78
EcoT38I GRGCYC 2 cut(s) 62, 74
ErhI CCWWGG 2 cut(s) 33, 78
FaeI CATG 2 cut(s) 19, 37
FaiI YATR 3 cut(s) 17, 35, 65
FaqI GGGAC 1 cut(s) 223
FatI CATG 2 cut(s) 15, 33
FbaI TGATCA 1 cut(s) 307
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 2 cut(s) 160, 286
FokI GGATG 1 cut(s) 133
FriOI GRGCYC 2 cut(s) 62, 74
Fsp4HI GCNGC 2 cut(s) 160, 286
GlaI GCGC 2 cut(s) 97, 247
GluI GCNGC 2 cut(s) 160, 286
GsuI CTGGAG 1 cut(s) 218
HaeII RGCGCY 1 cut(s) 249
HaeIII GGCC 2 cut(s) 32, 50
HapII CCGG 1 cut(s) 225
HgaI GACGC 1 cut(s) 277
HhaI GCGC 2 cut(s) 98, 248
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 2 cut(s) 19, 37
Hin6I GCGC 2 cut(s) 96, 246
HinP1I GCGC 2 cut(s) 96, 246
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 1 cut(s) 293
HpaII CCGG 1 cut(s) 225
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 2 cut(s) 21, 292
Hpy188I TCNGA 1 cut(s) 269
Hpy8I GTNNAC 2 cut(s) 21, 292
Hpy99I CGWCG 1 cut(s) 293
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 5 cut(s) 12, 119, 162, 207, 315
HpyF3I CTNAG 2 cut(s) 84, 266
HpySE526I ACGT 1 cut(s) 252
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 2 cut(s) 19, 37
HspAI GCGC 2 cut(s) 96, 246
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 1 cut(s) 307
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 1 cut(s) 99
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 253
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MhlI GDGCHC 2 cut(s) 62, 74
MluCI AATT 1 cut(s) 270
MlyI GAGTC 1 cut(s) 287
MnlI CCTC 2 cut(s) 137, 268
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 3 cut(s) 225, 242, 326
MvaI CCWGG 2 cut(s) 242, 326
NciI CCSGG 1 cut(s) 225
NcoI CCATGG 1 cut(s) 33
NdeII GATC 1 cut(s) 307
NlaIII CATG 2 cut(s) 19, 37
NlaIV GGNNCC 1 cut(s) 7
NmeAIII GCCGAG 1 cut(s) 239
NmuCI GTSAC 1 cut(s) 253
NspI RCATGY 1 cut(s) 19
PaqCI CACCTGC 1 cut(s) 164
PasI CCCWGGG 1 cut(s) 241
PciI ACATGT 1 cut(s) 15
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PflFI GACNNNGTC 1 cut(s) 296
PflMI CCANNNNNTGG 1 cut(s) 241
PkrI GCNGC 2 cut(s) 161, 287
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
PscI ACATGT 1 cut(s) 15
Psp6I CCWGG 2 cut(s) 240, 324
PspGI CCWGG 2 cut(s) 240, 324
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 139
PstNI CAGNNNCTG 1 cut(s) 241
PsyI GACNNNGTC 1 cut(s) 296
SalI GTCGAC 1 cut(s) 290
SatI GCNGC 2 cut(s) 160, 286
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 1 cut(s) 139
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 3 cut(s) 225, 242, 326
SduI GDGCHC 2 cut(s) 62, 74
SfaNI GCATC 1 cut(s) 99
SinI GGWCC 1 cut(s) 139
Sse9I AATT 1 cut(s) 270
SsiI CCGC 2 cut(s) 165, 285
StyD4I CCNGG 3 cut(s) 223, 240, 324
StyI CCWWGG 2 cut(s) 33, 78
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 1 cut(s) 255
TaqI TCGA 1 cut(s) 291
TasI AATT 1 cut(s) 270
TauI GCSGC 1 cut(s) 288
TscAI CASTG 2 cut(s) 30, 317
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 1 cut(s) 159
Tsp45I GTSAC 1 cut(s) 253
TspRI CASTG 2 cut(s) 30, 317
Tth111I GACNNNGTC 1 cut(s) 296
Van91I CCANNNNNTGG 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 139
XceI RCATGY 1 cut(s) 19
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XmiI GTMKAC 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.