Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004981

Physical Location & Seq

Genomic Coordinates Forward (+)

23813943 .. 23814839

Gene Structure 897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G64160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGTAGGCCAAATGAAATCGTTTCTCTTCTTATTCGTTTTCCTTGTTCTAACAAAAACCGTCATATCAGCTAGAAAACCATCCAAATCGCAACCAAAACCGTGCAAAAACTTTGTCCTCTACTACCACGACATAATGTTCGGTGTCGACGACGTGCAAAACGCGACTTCTGCAGCAGTTACCAACCCACCGGGCCTCGGGAATTTCAAATTCGGGAAACTCGTTATCTTCGACGATCCTATGACCATAGACAAAAACTTTCAGTCCGAACCTGTGGCAAGAGCTCAAGGGTTCTATTTCTACGACATGAAGAATGACTACAATGCATGGTTCGCGTACACACTTGTGTTCAACTCGACTCAACACAAAGGGACGTTGAACATAATGGGAGCAGATCTCATGATGGTGCAGAGTAGAGATTTGTCTGTTGTCGGAGGGACAGGTGATTTTTTCATGTCTCGAGGGATTGTTACGTTTGAGACCGATACCTTTGAAGGTGCTAAGTATTTTAGGGTCAAGATGGATATCAAACTCTATGAATGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0018130 GO:0018904 GO:0018958 GO:0019438 GO:0019748 GO:0030234 GO:0042349 GO:0042537 GO:0044237 GO:0044249 GO:0044281 GO:0044550 GO:0046189 GO:0046483 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901360 GO:1901362 GO:1901503 GO:1901576 GO:1901598 GO:1901599 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

182

Amino Acids

20.73

Weight (kDa)

8.44

Isoelectric Point (pI)

24.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	35 - 178	3.5e-37	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64160 AT4G23690
fragaria_vesca	FvH4_5g03711 FvH4_5g03720
malus_domestica	MD06G1096600.v1.1 MD14G1116900.v1.1
prunus_persica	Prupe.5G111400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480301 RchiOBHm_Chr7g0195991 RchiOBHm_Chr7g0196001
rosa_laevigata	RLG00000004076 RLG00000023497
rosa_multiflora	Rmu_sc0000311.1_g000009 Rmu_sc0001640.1_g000015 Rmu_sc0005575.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259960
rosa_rugosa	Rorug07G0028700 Rorug07G0028900
rosa_samantha	Rh3AG233800 Rh3BG266100 Rh3CG263800 Rh7AG155400 Rh7BG157300 Rh7BG157400 Rh7CG160800 Rh7DG156400 Rh7DG156500
rosa_wichuraiana	Rw3G021010 Rw7G013290 Rw7G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	2 cut(s)	164, 335
AclWI	GGATC	1 cut(s)	230
AcsI	RAATTY	2 cut(s)	202, 209
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	4 cut(s)	208, 352, 379, 494
AjiI	CACGTC	1 cut(s)	154
AleI	CACNNNNGTG	1 cut(s)	344
AluBI	AGCT	2 cut(s)	71, 284
AluI	AGCT	2 cut(s)	71, 284
Alw21I	GWGCWC	1 cut(s)	286
Alw26I	GTCTC	2 cut(s)	462, 473
AlwI	GGATC	1 cut(s)	230
Ama87I	CYCGRG	2 cut(s)	197, 459
AoxI	GGCC	2 cut(s)	7, 193
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	2 cut(s)	202, 209
ArsI	GACNNNNNNTTYG	4 cut(s)	99, 122, 131, 154
AspS9I	GGNCC	1 cut(s)	193
AsuC2I	CCSGG	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	455
AvaI	CYCGRG	2 cut(s)	197, 459
BanII	GRGCYC	1 cut(s)	286
BarI	GAAGNNNNNNTAC	2 cut(s)	302, 334
Bbv12I	GWGCWC	1 cut(s)	286
BbvI	GCAGC	1 cut(s)	185
BccI	CCATC	3 cut(s)	88, 397, 514
BcnI	CCSGG	1 cut(s)	192
BcoDI	GTCTC	2 cut(s)	462, 473
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	171
BglII	AGATCT	1 cut(s)	394
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	192
BmeT110I	CYCGRG	2 cut(s)	197, 459
BmgBI	CACGTC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	192
BplI	GAGNNNNNCTC	2 cut(s)	381, 413
BpuEI	CTTGAG	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	524
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse8I	GATNNNNATC	1 cut(s)	524
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	1 cut(s)	80
BseJI	GATNNNNATC	1 cut(s)	524
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	185
BsgI	GTGCAG	1 cut(s)	428
Bsh1236I	CGCG	2 cut(s)	164, 335
BshFI	GGCC	2 cut(s)	9, 195
BsiHKAI	GWGCWC	1 cut(s)	286
BsiHKCI	CYCGRG	2 cut(s)	197, 459
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	2 cut(s)	385, 451
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	2 cut(s)	462, 473
BsmFI	GGGAC	2 cut(s)	385, 451
BsnI	GGCC	2 cut(s)	9, 195
Bso31I	GGTCTC	1 cut(s)	473
BsoBI	CYCGRG	2 cut(s)	197, 459
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	2 cut(s)	235, 394
BspANI	GGCC	2 cut(s)	9, 195
BspFNI	CGCG	2 cut(s)	164, 335
BspHI	TCATGA	1 cut(s)	399
BspMAI	CTGCAG	1 cut(s)	175
BspPI	GGATC	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	473
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	2 cut(s)	235, 394
Bst4CI	ACNGT	2 cut(s)	61, 102
Bst6I	CTCTTC	1 cut(s)	32
BstDEI	CTNAG	1 cut(s)	501
BstF5I	GGATG	1 cut(s)	80
BstFNI	CGCG	2 cut(s)	164, 335
BstKTI	GATC	2 cut(s)	238, 397
BstMAI	GTCTC	2 cut(s)	462, 473
BstMBI	GATC	2 cut(s)	235, 394
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 332
BstSCI	CCNGG	1 cut(s)	190
BstSFI	CTRYAG	1 cut(s)	171
BstUI	CGCG	2 cut(s)	164, 335
BstV1I	GCAGC	1 cut(s)	185
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	9, 195
BtrI	CACGTC	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	80
CciI	TCATGA	1 cut(s)	399
Cfr13I	GGNCC	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	4 cut(s)	307, 327, 400, 454
CviJI	RGCY	4 cut(s)	9, 71, 195, 284
CviKI_1	RGCY	4 cut(s)	9, 71, 195, 284
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	1 cut(s)	501
DpnI	GATC	2 cut(s)	237, 396
DpnII	GATC	2 cut(s)	235, 394
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	284
Eco24I	GRGCYC	1 cut(s)	286
Eco31I	GGTCTC	1 cut(s)	473
Eco32I	GATATC	1 cut(s)	526
Eco53kI	GAGCTC	1 cut(s)	284
Eco88I	CYCGRG	2 cut(s)	197, 459
EcoICRI	GAGCTC	1 cut(s)	284
EcoRV	GATATC	1 cut(s)	526
EcoT22I	ATGCAT	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	286
FaeI	CATG	4 cut(s)	310, 330, 403, 457
FaqI	GGGAC	2 cut(s)	385, 451
FatI	CATG	4 cut(s)	306, 326, 399, 453
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	1 cut(s)	67
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	1 cut(s)	174
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	9, 195
HapII	CCGG	1 cut(s)	191
Hin1II	CATG	4 cut(s)	310, 330, 403, 457
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	1 cut(s)	358
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	2 cut(s)	148, 339
Hpy188I	TCNGA	2 cut(s)	268, 434
Hpy188III	TCNNGA	5 cut(s)	199, 214, 400, 459, 517
Hpy8I	GTNNAC	2 cut(s)	148, 339
Hpy99I	CGWCG	3 cut(s)	152, 155, 236
HpyAV	CCTTC	1 cut(s)	488
HpyCH4III	ACNGT	2 cut(s)	61, 102
HpyCH4IV	ACGT	3 cut(s)	153, 374, 473
HpyCH4V	TGCA	5 cut(s)	105, 157, 173, 326, 409
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 332
HpyF3I	CTNAG	1 cut(s)	501
HpySE526I	ACGT	3 cut(s)	153, 374, 473
Hsp92II	CATG	4 cut(s)	310, 330, 403, 457
Kzo9I	GATC	2 cut(s)	235, 394
LmnI	GCTCC	1 cut(s)	389
LpnPI	CCDG	3 cut(s)	204, 285, 426
Lsp1109I	GCAGC	1 cut(s)	185
MaeI	CTAG	1 cut(s)	72
MaeII	ACGT	3 cut(s)	153, 374, 473
MaeIII	GTNAC	3 cut(s)	178, 469, 542
MalI	GATC	2 cut(s)	237, 396
MboI	GATC	2 cut(s)	235, 394
MboII	GAAGA	3 cut(s)	19, 220, 322
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	2 cut(s)	202, 209
MlyI	GAGTC	1 cut(s)	352
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	4 cut(s)	128, 206, 428, 455
Mph1103I	ATGCAT	1 cut(s)	328
MslI	CAYNNNNRTG	2 cut(s)	344, 404
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	192
MvnI	CGCG	2 cut(s)	164, 335
MwoI	GCNNNNNNNGC	2 cut(s)	170, 332
NciI	CCSGG	1 cut(s)	192
NdeII	GATC	2 cut(s)	235, 394
NlaIII	CATG	4 cut(s)	310, 330, 403, 457
NsiI	ATGCAT	1 cut(s)	328
OliI	CACNNNNGTG	1 cut(s)	344
PaeR7I	CTCGAG	1 cut(s)	459
PagI	TCATGA	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	3 cut(s)	147, 219, 228
PkrI	GCNGC	1 cut(s)	175
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
Psp124BI	GAGCTC	1 cut(s)	286
PspPI	GGNCC	1 cut(s)	193
PstI	CTGCAG	1 cut(s)	175
PsuI	RGATCY	1 cut(s)	394
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
RseI	CAYNNNNRTG	2 cut(s)	344, 404
SacI	GAGCTC	1 cut(s)	286
SalI	GTCGAC	1 cut(s)	146
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	2 cut(s)	235, 394
Sau96I	GGNCC	1 cut(s)	193
SchI	GAGTC	1 cut(s)	352
ScrFI	CCNGG	1 cut(s)	192
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	9 cut(s)	73, 156, 274, 286, 377, 445, 476, 491, 499
SfcI	CTRYAG	1 cut(s)	171
Sfr274I	CTCGAG	1 cut(s)	459
SlaI	CTCGAG	1 cut(s)	459
SmiMI	CAYNNNNRTG	2 cut(s)	344, 404
SmlI	CTYRAG	2 cut(s)	285, 459
SmoI	CTYRAG	2 cut(s)	285, 459
Sse9I	AATT	2 cut(s)	202, 209
SspMI	CTAG	1 cut(s)	72
SstI	GAGCTC	1 cut(s)	286
StyD4I	CCNGG	1 cut(s)	190
TaaI	ACNGT	2 cut(s)	61, 102
TaiI	ACGT	3 cut(s)	156, 377, 476
TaqI	TCGA	4 cut(s)	147, 231, 356, 460
TaqII	GACCGA	1 cut(s)	497
TasI	AATT	2 cut(s)	202, 209
TseI	GCWGC	1 cut(s)	173
TspDTI	ATGAA	3 cut(s)	29, 323, 442
XapI	RAATTY	2 cut(s)	202, 209
XhoI	CTCGAG	1 cut(s)	459
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	1 cut(s)	72
Zsp2I	ATGCAT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.