Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0004981

Physical Location & Seq

Genomic Coordinates Reverse (-)

18991160 .. 18991717

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1116900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGACAACTTTTTCAGCAAAATTTTGTTTCCTTATTTTGGTCTTCGTTATTTTTCCATCTGTTTTATCAACCAGAACTCGAAAGTTCAAAGCAGAGAAACCATGCATGAGAATGCAGCTGTATTACCATGACAAACTGTTTGATGGCACGCAGAAGGATAAGACTAATGCAACATCTGCTGCAGTAGCAAATTCAACCAAGCTTGCGCCAAACTCTCAATTCGGTATGCTTGTTGTCTTTAATGACCCTATTACAAAGGACGATAATTATCACTCTCCGCCCATTGCAAATGCGCAAGGCTTCTATTTCTACGACAGAAAGGACACCAACTCAGCTTGGTTTGCGTACACATTGGTATTCAACTCAAGTGAGCACAGGGGTACATTGAATATTATGGGTGCGGATTTGATGCCAGAGAAAACTAGGGATCTTTCGGTGGTTGGAGGGACTGGAGACTTCTTCATGGCTAGAGGGATTGTCACTCTTCAAACTGATACTTTCCAGGGTGCATATTATTTTCGCCTCAAGATGGATATCAAGTTGTATGAATGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0018130 GO:0018904 GO:0018958 GO:0019438 GO:0019748 GO:0030234 GO:0042349 GO:0042537 GO:0044237 GO:0044249 GO:0044281 GO:0044550 GO:0046189 GO:0046483 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901360 GO:1901362 GO:1901503 GO:1901576 GO:1901598 GO:1901599 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

186

Amino Acids

21.12

Weight (kDa)

8.9

Isoelectric Point (pI)

26.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	36 - 180	9.7e-36	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64160 AT4G23690
fragaria_vesca	FvH4_5g03711 FvH4_5g03720
malus_domestica	MD06G1096600.v1.1 MD14G1116900.v1.1
prunus_persica	Prupe.5G111400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480301 RchiOBHm_Chr7g0195991 RchiOBHm_Chr7g0196001
rosa_laevigata	RLG00000004076 RLG00000023497
rosa_multiflora	Rmu_sc0000311.1_g000009 Rmu_sc0001640.1_g000015 Rmu_sc0005575.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259960
rosa_rugosa	Rorug07G0028700 Rorug07G0028900
rosa_samantha	Rh3AG233800 Rh3BG266100 Rh3CG263800 Rh7AG155400 Rh7BG157300 Rh7BG157400 Rh7CG160800 Rh7DG156400 Rh7DG156500
rosa_wichuraiana	Rw3G021010 Rw7G013290 Rw7G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	294
AciI	CCGC	2 cut(s)	278, 401
AclWI	GGATC	1 cut(s)	435
AcsI	RAATTY	2 cut(s)	20, 190
AfaI	GTAC	2 cut(s)	347, 382
AfiI	CCNNNNNNNGG	2 cut(s)	37, 529
AgsI	TTSAA	5 cut(s)	88, 195, 361, 388, 488
AjnI	CCWGG	1 cut(s)	501
AluBI	AGCT	3 cut(s)	118, 202, 335
AluI	AGCT	3 cut(s)	118, 202, 335
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	1 cut(s)	447
AlwI	GGATC	1 cut(s)	435
ApeKI	GCWGC	2 cut(s)	115, 179
ApoI	RAATTY	2 cut(s)	20, 190
ArsI	GACNNNNNNTTYG	2 cut(s)	122, 154
AspLEI	GCGC	2 cut(s)	208, 295
BbsI	GAAGAC	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	2 cut(s)	127, 166
BccI	CCATC	3 cut(s)	64, 137, 523
BciT130I	CCWGG	1 cut(s)	503
BcoDI	GTCTC	1 cut(s)	447
BfaI	CTAG	2 cut(s)	423, 468
BfmI	CTRYAG	1 cut(s)	180
BisI	GCNGC	2 cut(s)	116, 180
BlsI	GCNGC	2 cut(s)	117, 181
Bme1390I	CCNGG	1 cut(s)	503
BmrFI	CCNGG	1 cut(s)	503
BmsI	GCATC	1 cut(s)	399
BpiI	GAAGAC	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	471
BpuEI	CTTGAG	2 cut(s)	349, 509
BsaBI	GATNNNNATC	2 cut(s)	267, 533
BsaJI	CCNNGG	1 cut(s)	502
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 529
Bse1I	ACTGG	1 cut(s)	454
Bse3DI	GCAATG	1 cut(s)	282
Bse8I	GATNNNNATC	2 cut(s)	267, 533
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	1 cut(s)	502
BseJI	GATNNNNATC	2 cut(s)	267, 533
BseLI	CCNNNNNNNGG	2 cut(s)	37, 529
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	454
BseXI	GCAGC	2 cut(s)	127, 166
BsiHKAI	GWGCWC	1 cut(s)	375
BslFI	GGGAC	1 cut(s)	460
BslI	CCNNNNNNNGG	2 cut(s)	37, 529
BsmAI	GTCTC	1 cut(s)	447
BsmFI	GGGAC	1 cut(s)	460
BsmI	GAATGC	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	1 cut(s)	427
BspACI	CCGC	2 cut(s)	278, 401
BspCNI	CTCAG	1 cut(s)	344
BspMAI	CTGCAG	1 cut(s)	184
BspPI	GGATC	1 cut(s)	435
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	454
BssECI	CCNNGG	1 cut(s)	502
BssMI	GATC	1 cut(s)	427
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	489
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstC8I	GCNNGC	2 cut(s)	149, 204
BstDEI	CTNAG	1 cut(s)	331
BstHHI	GCGC	2 cut(s)	208, 295
BstKTI	GATC	1 cut(s)	430
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	1 cut(s)	427
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 185, 341
BstNI	CCWGG	1 cut(s)	503
BstSCI	CCNGG	1 cut(s)	501
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	127, 166
BstV2I	GAAGAC	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
Cac8I	GCNNGC	2 cut(s)	149, 204
CfoI	GCGC	2 cut(s)	208, 295
Csp6I	GTAC	2 cut(s)	346, 381
CviAII	CATG	4 cut(s)	102, 106, 128, 463
CviJI	RGCY	5 cut(s)	118, 202, 300, 335, 467
CviKI_1	RGCY	5 cut(s)	118, 202, 300, 335, 467
CviQI	GTAC	2 cut(s)	346, 381
DdeI	CTNAG	1 cut(s)	331
DpnI	GATC	1 cut(s)	429
DpnII	GATC	1 cut(s)	427
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
EciI	GGCGGA	1 cut(s)	267
Eco32I	GATATC	1 cut(s)	535
EcoRII	CCWGG	1 cut(s)	501
EcoRV	GATATC	1 cut(s)	535
EcoT22I	ATGCAT	1 cut(s)	107
FaeI	CATG	4 cut(s)	105, 109, 131, 466
FaiI	YATR	8 cut(s)	103, 107, 129, 227, 395, 464, 511, 546
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	4 cut(s)	101, 105, 127, 462
Fnu4HI	GCNGC	2 cut(s)	116, 180
Fsp4HI	GCNGC	2 cut(s)	116, 180
FspBI	CTAG	2 cut(s)	423, 468
FspI	TGCGCA	1 cut(s)	294
GlaI	GCGC	2 cut(s)	207, 294
GluI	GCNGC	2 cut(s)	116, 180
GsuI	CTGGAG	1 cut(s)	471
HhaI	GCGC	2 cut(s)	208, 295
Hin1II	CATG	4 cut(s)	105, 109, 131, 466
Hin6I	GCGC	2 cut(s)	206, 293
HinP1I	GCGC	2 cut(s)	206, 293
HindIII	AAGCTT	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188III	TCNNGA	1 cut(s)	526
Hpy8I	GTNNAC	1 cut(s)	348
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	138
HpyCH4V	TGCA	6 cut(s)	105, 115, 170, 182, 287, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 185, 341
HpyF3I	CTNAG	1 cut(s)	331
Hsp92II	CATG	4 cut(s)	105, 109, 131, 466
HspAI	GCGC	2 cut(s)	206, 293
Kzo9I	GATC	1 cut(s)	427
LpnPI	CCDG	6 cut(s)	85, 361, 426, 435, 488, 515
Lsp1109I	GCAGC	2 cut(s)	127, 166
LweI	GCATC	1 cut(s)	399
MaeI	CTAG	2 cut(s)	423, 468
MaeIII	GTNAC	2 cut(s)	478, 551
MalI	GATC	1 cut(s)	429
MboI	GATC	1 cut(s)	427
MboII	GAAGA	3 cut(s)	34, 451, 476
MflI	RGATCY	1 cut(s)	427
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	4 cut(s)	20, 190, 218, 265
MmeI	TCCRAC	1 cut(s)	421
MnlI	CCTC	3 cut(s)	437, 464, 533
Mph1103I	ATGCAT	1 cut(s)	107
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	110
MspA1I	CMGCKG	1 cut(s)	118
MspR9I	CCNGG	1 cut(s)	503
Mva1269I	GAATGC	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	503
MwoI	GCNNNNNNNGC	3 cut(s)	176, 185, 341
NdeII	GATC	1 cut(s)	427
NlaIII	CATG	4 cut(s)	105, 109, 131, 466
NmuCI	GTSAC	1 cut(s)	478
NsbI	TGCGCA	1 cut(s)	294
NsiI	ATGCAT	1 cut(s)	107
PctI	GAATGC	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	117, 181
Psp6I	CCWGG	1 cut(s)	501
PspGI	CCWGG	1 cut(s)	501
PstI	CTGCAG	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	427
PvuII	CAGCTG	1 cut(s)	118
RsaI	GTAC	2 cut(s)	347, 382
RsaNI	GTAC	2 cut(s)	346, 381
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	2 cut(s)	116, 180
Sau3AI	GATC	1 cut(s)	427
ScrFI	CCNGG	1 cut(s)	503
SduI	GDGCHC	1 cut(s)	375
SetI	ASST	3 cut(s)	120, 204, 337
SfaNI	GCATC	1 cut(s)	399
SfcI	CTRYAG	1 cut(s)	180
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	2 cut(s)	364, 524
SmoI	CTYRAG	2 cut(s)	364, 524
Sse9I	AATT	4 cut(s)	20, 190, 218, 265
SsiI	CCGC	2 cut(s)	278, 401
SspI	AATATT	1 cut(s)	391
SspMI	CTAG	2 cut(s)	423, 468
StyD4I	CCNGG	1 cut(s)	501
TaaI	ACNGT	1 cut(s)	138
TaqI	TCGA	1 cut(s)	79
TasI	AATT	4 cut(s)	20, 190, 218, 265
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	2 cut(s)	115, 179
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	1 cut(s)	451
XapI	RAATTY	2 cut(s)	20, 190
XspI	CTAG	2 cut(s)	423, 468
Zsp2I	ATGCAT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.