Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0004981

Physical Location & Seq

Genomic Coordinates Reverse (-)

23097425 .. 23097877

Gene Structure 453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1096600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAGAATGCAGCTGTATTATCACGACAAACTATTTGACGGCACGCACAAGGATAAGACTAATGCAACATCTGCTGCAACCGCAAATCCAACCAAGCTTGCGCCAGGCTCTCAATTTGGTATGCTTGTTGTCTTTAATGACCCTATTACAAGGGACGACAAGTATCACTCTCCGCACATCGCAAACGCTCAAGGCTTCTATTTCTACGACAGGAAAGACACCTACTCAGCTTGGTTTGCATTCACATTGGTGTTCAACTCAAGTGAGCACAGGGGTACATCGAATATTATGGGTGCGGATTTGATGCCGGAGAAAACTAGGGATCTTTCGGTGGTCGGAGGGACTGGAGACTTCTTCATGGCTAGAGGGATTGCCAGTCTTCAAACTGATACTTTCCAGGGTCAATATTATTTTCGCCTCAAGATGGATATCAAGTTGTATGAACGTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0018130 GO:0018904 GO:0018958 GO:0019438 GO:0019748 GO:0030234 GO:0042349 GO:0042537 GO:0044237 GO:0044249 GO:0044281 GO:0044550 GO:0046189 GO:0046483 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901360 GO:1901362 GO:1901503 GO:1901576 GO:1901598 GO:1901599 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

151

Amino Acids

17.14

Weight (kDa)

7.85

Isoelectric Point (pI)

28.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	2 - 145	1.2e-33	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64160 AT4G23690
fragaria_vesca	FvH4_5g03711 FvH4_5g03720
malus_domestica	MD06G1096600.v1.1 MD14G1116900.v1.1
prunus_persica	Prupe.5G111400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480301 RchiOBHm_Chr7g0195991 RchiOBHm_Chr7g0196001
rosa_laevigata	RLG00000004076 RLG00000023497
rosa_multiflora	Rmu_sc0000311.1_g000009 Rmu_sc0001640.1_g000015 Rmu_sc0005575.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259960
rosa_rugosa	Rorug07G0028700 Rorug07G0028900
rosa_samantha	Rh3AG233800 Rh3BG266100 Rh3CG263800 Rh7AG155400 Rh7BG157300 Rh7BG157400 Rh7CG160800 Rh7DG156400 Rh7DG156500
rosa_wichuraiana	Rw3G021010 Rw7G013290 Rw7G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	81, 173, 296
AclI	AACGTT	1 cut(s)	445
AclWI	GGATC	1 cut(s)	330
AfaI	GTAC	1 cut(s)	277
AfiI	CCNNNNNNNGG	1 cut(s)	424
AgsI	TTSAA	2 cut(s)	256, 383
AjnI	CCWGG	2 cut(s)	103, 396
AleI	CACNNNNGTG	1 cut(s)	248
AluBI	AGCT	3 cut(s)	13, 97, 230
AluI	AGCT	3 cut(s)	13, 97, 230
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	1 cut(s)	342
AlwI	GGATC	1 cut(s)	330
ApeKI	GCWGC	2 cut(s)	10, 74
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
AspLEI	GCGC	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	22, 61
BccI	CCATC	1 cut(s)	418
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	2 cut(s)	105, 398
BcoDI	GTCTC	1 cut(s)	342
BfaI	CTAG	2 cut(s)	318, 363
BisI	GCNGC	2 cut(s)	11, 75
BlsI	GCNGC	2 cut(s)	12, 76
Bme1390I	CCNGG	2 cut(s)	105, 398
BmrFI	CCNGG	2 cut(s)	105, 398
BmsI	GCATC	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	371
BpmI	CTGGAG	1 cut(s)	366
BpuEI	CTTGAG	3 cut(s)	174, 244, 404
BsaBI	GATNNNNATC	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
Bse1I	ACTGG	2 cut(s)	349, 375
Bse8I	GATNNNNATC	1 cut(s)	428
BseBI	CCWGG	2 cut(s)	105, 398
BseDI	CCNNGG	1 cut(s)	397
BseJI	GATNNNNATC	1 cut(s)	428
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	2 cut(s)	349, 375
BseXI	GCAGC	2 cut(s)	22, 61
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	308
BslFI	GGGAC	2 cut(s)	167, 355
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmAI	GTCTC	1 cut(s)	342
BsmFI	GGGAC	2 cut(s)	167, 355
BsmI	GAATGC	2 cut(s)	12, 239
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	322
BspACI	CCGC	3 cut(s)	81, 173, 296
BspCNI	CTCAG	1 cut(s)	239
BspPI	GGATC	1 cut(s)	330
BsrI	ACTGG	2 cut(s)	349, 375
BssECI	CCNNGG	1 cut(s)	397
BssMI	GATC	1 cut(s)	322
Bst2UI	CCWGG	2 cut(s)	105, 398
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstC8I	GCNNGC	2 cut(s)	44, 99
BstDEI	CTNAG	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	1 cut(s)	325
BstMAI	GTCTC	1 cut(s)	342
BstMBI	GATC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 80, 236
BstNI	CCWGG	2 cut(s)	105, 398
BstSCI	CCNGG	2 cut(s)	103, 396
BstV1I	GCAGC	2 cut(s)	22, 61
BstV2I	GAAGAC	1 cut(s)	371
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BtgZI	GCGATG	1 cut(s)	163
Cac8I	GCNNGC	2 cut(s)	44, 99
CfoI	GCGC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	276
CviAII	CATG	1 cut(s)	358
CviJI	RGCY	6 cut(s)	13, 97, 108, 195, 230, 362
CviKI_1	RGCY	6 cut(s)	13, 97, 108, 195, 230, 362
CviQI	GTAC	1 cut(s)	276
DdeI	CTNAG	1 cut(s)	226
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
Eco32I	GATATC	1 cut(s)	430
EcoRII	CCWGG	2 cut(s)	103, 396
EcoRV	GATATC	1 cut(s)	430
FaeI	CATG	1 cut(s)	361
FaiI	YATR	4 cut(s)	122, 290, 359, 441
FaqI	GGGAC	2 cut(s)	167, 355
FatI	CATG	1 cut(s)	357
Fnu4HI	GCNGC	2 cut(s)	11, 75
Fsp4HI	GCNGC	2 cut(s)	11, 75
FspBI	CTAG	2 cut(s)	318, 363
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	2 cut(s)	11, 75
GsuI	CTGGAG	1 cut(s)	366
HapII	CCGG	1 cut(s)	308
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	1 cut(s)	361
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HindIII	AAGCTT	1 cut(s)	95
HpaII	CCGG	1 cut(s)	308
Hpy188I	TCNGA	1 cut(s)	338
Hpy188III	TCNNGA	2 cut(s)	23, 421
HpyCH4IV	ACGT	1 cut(s)	445
HpyCH4V	TGCA	4 cut(s)	10, 65, 77, 239
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 80, 236
HpyF3I	CTNAG	1 cut(s)	226
HpySE526I	ACGT	1 cut(s)	445
Hsp92II	CATG	1 cut(s)	361
HspAI	GCGC	1 cut(s)	101
Kzo9I	GATC	1 cut(s)	322
LpnPI	CCDG	9 cut(s)	90, 117, 196, 256, 321, 330, 383, 388, 410
Lsp1109I	GCAGC	2 cut(s)	22, 61
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	2 cut(s)	318, 363
MaeII	ACGT	1 cut(s)	445
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	2 cut(s)	346, 371
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	1 cut(s)	113
MmeI	TCCRAC	2 cut(s)	113, 316
MnlI	CCTC	3 cut(s)	332, 359, 428
MseI	TTAA	2 cut(s)	135, 451
MslI	CAYNNNNRTG	1 cut(s)	248
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	2 cut(s)	105, 398
Mva1269I	GAATGC	2 cut(s)	12, 239
MvaI	CCWGG	2 cut(s)	105, 398
MwoI	GCNNNNNNNGC	3 cut(s)	71, 80, 236
NdeII	GATC	1 cut(s)	322
NlaIII	CATG	1 cut(s)	361
OliI	CACNNNNGTG	1 cut(s)	248
PctI	GAATGC	2 cut(s)	12, 239
PkrI	GCNGC	2 cut(s)	12, 76
Psp1406I	AACGTT	1 cut(s)	445
Psp6I	CCWGG	2 cut(s)	103, 396
PspGI	CCWGG	2 cut(s)	103, 396
PsuI	RGATCY	1 cut(s)	322
PvuII	CAGCTG	1 cut(s)	13
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
RseI	CAYNNNNRTG	1 cut(s)	248
SaqAI	TTAA	2 cut(s)	135, 451
SatI	GCNGC	2 cut(s)	11, 75
Sau3AI	GATC	1 cut(s)	322
ScrFI	CCNGG	2 cut(s)	105, 398
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	5 cut(s)	15, 99, 224, 232, 448
SfaNI	GCATC	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	248
SmlI	CTYRAG	3 cut(s)	189, 259, 419
SmoI	CTYRAG	3 cut(s)	189, 259, 419
Sse9I	AATT	1 cut(s)	113
SsiI	CCGC	3 cut(s)	81, 173, 296
SspI	AATATT	2 cut(s)	286, 407
SspMI	CTAG	2 cut(s)	318, 363
StyD4I	CCNGG	2 cut(s)	103, 396
TaiI	ACGT	1 cut(s)	448
TaqI	TCGA	1 cut(s)	281
TasI	AATT	1 cut(s)	113
Tru1I	TTAA	2 cut(s)	135, 451
Tru9I	TTAA	2 cut(s)	135, 451
TseI	GCWGC	2 cut(s)	10, 74
TspDTI	ATGAA	1 cut(s)	346
XspI	CTAG	2 cut(s)	318, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.