Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004981

Physical Location & Seq

Genomic Coordinates Reverse (-)

2173324 .. 2173881

Gene Structure 558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g03720.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTCAACTATAGTAGCGAAAAGTTCCATTCTTCTGATCCTCACCTTCATTATGTTGGTCTTCCCTTCTGTTTTGGCAACTAAAACTCCATTCAAAGAGTCGAAGCCATGCAAGAGGCTTGTGCTCTATTACCACGACATTCTATTCAACGGCACTGATGCGAGCAATGCAACATCAGCTGCAGTGGCCAATGCAACAGGGCTTGCCACACCGCACAAGTTTGGTATGCTGGTAGTGTTCAATGATCCTCTTACCAAAGACCACCATCTTCTGTCTCCTGCCGTTGGAAGAGCTCAAGGCTTCTATTTCTATGACATGAAAGACGAGTACACTGCTTGGTTTGCCTACACTTTGGTGTTCAACTCGAGCGAGCACAAGGGTACTCTCAATATCATGGGGGCGGATTTGATGTATGACAAGACTAGGGATCTTTCGGTCGTCGGAGGAACAGGAGATTTCTTCATGGCTAGAGGGATTTGCACCTTTCAAACTGATACTTTTCAGGGTGACTATTACTTTCGCCTCAAAATGGATATCAAGTTGTATGAATGTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0018130 GO:0018904 GO:0018958 GO:0019438 GO:0019748 GO:0030234 GO:0042349 GO:0042537 GO:0044237 GO:0044249 GO:0044281 GO:0044550 GO:0046189 GO:0046483 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901360 GO:1901362 GO:1901503 GO:1901576 GO:1901598 GO:1901599 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

186

Amino Acids

20.81

Weight (kDa)

6.95

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	37 - 179	4.8e-39	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64160 AT4G23690
fragaria_vesca	FvH4_5g03711 FvH4_5g03720
malus_domestica	MD06G1096600.v1.1 MD14G1116900.v1.1
prunus_persica	Prupe.5G111400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480301 RchiOBHm_Chr7g0195991 RchiOBHm_Chr7g0196001
rosa_laevigata	RLG00000004076 RLG00000023497
rosa_multiflora	Rmu_sc0000311.1_g000009 Rmu_sc0001640.1_g000015 Rmu_sc0005575.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259960
rosa_rugosa	Rorug07G0028700 Rorug07G0028900
rosa_samantha	Rh3AG233800 Rh3BG266100 Rh3CG263800 Rh7AG155400 Rh7BG157300 Rh7BG157400 Rh7CG160800 Rh7DG156400 Rh7DG156500
rosa_wichuraiana	Rw3G021010 Rw7G013290 Rw7G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	212, 401
AclWI	GGATC	3 cut(s)	31, 239, 435
AcoI	YGGCCR	1 cut(s)	186
AfaI	GTAC	2 cut(s)	329, 382
AfiI	CCNNNNNNNGG	2 cut(s)	284, 529
AgsI	TTSAA	5 cut(s)	94, 148, 241, 361, 488
AleI	CACNNNNGTG	1 cut(s)	353
AluBI	AGCT	2 cut(s)	179, 293
AluI	AGCT	2 cut(s)	179, 293
Alw21I	GWGCWC	3 cut(s)	126, 295, 375
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	3 cut(s)	31, 239, 435
Ama87I	CYCGRG	1 cut(s)	364
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	1 cut(s)	179
AsuHPI	GGTGA	2 cut(s)	34, 518
AvaI	CYCGRG	1 cut(s)	364
BalI	TGGCCA	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	295
BbsI	GAAGAC	1 cut(s)	52
Bbv12I	GWGCWC	3 cut(s)	126, 295, 375
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	1 cut(s)	273
BceAI	ACGGC	2 cut(s)	166, 266
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BcoDI	GTCTC	1 cut(s)	279
BfaI	CTAG	2 cut(s)	423, 468
BfmI	CTRYAG	2 cut(s)	9, 180
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	364
BmsI	GCATC	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	52
BpuEI	CTTGAG	1 cut(s)	279
BsaXI	ACNNNNNCTCC	2 cut(s)	70, 100
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 529
Bse3DI	GCAATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	2 cut(s)	284, 529
BseMI	GCAATG	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	166
Bsh1285I	CGRYCG	1 cut(s)	438
BshFI	GGCC	1 cut(s)	188
BsiEI	CGRYCG	1 cut(s)	438
BsiHKAI	GWGCWC	3 cut(s)	126, 295, 375
BsiHKCI	CYCGRG	1 cut(s)	364
BslI	CCNNNNNNNGG	2 cut(s)	284, 529
BsmAI	GTCTC	1 cut(s)	279
BsnI	GGCC	1 cut(s)	188
BsoBI	CYCGRG	1 cut(s)	364
Bsp1286I	GDGCHC	3 cut(s)	126, 295, 375
Bsp143I	GATC	3 cut(s)	36, 244, 427
BspACI	CCGC	2 cut(s)	212, 401
BspANI	GGCC	1 cut(s)	188
BspMAI	CTGCAG	1 cut(s)	184
BspPI	GGATC	3 cut(s)	31, 239, 435
BspQI	GCTCTTC	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	172
BssMI	GATC	3 cut(s)	36, 244, 427
Bst6I	CTCTTC	1 cut(s)	283
BstC8I	GCNNGC	3 cut(s)	163, 204, 371
BstKTI	GATC	3 cut(s)	39, 247, 430
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	3 cut(s)	36, 244, 427
BstMCI	CGRYCG	1 cut(s)	438
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 176, 185, 341
BstSFI	CTRYAG	2 cut(s)	9, 180
BstV1I	GCAGC	1 cut(s)	166
BstV2I	GAAGAC	1 cut(s)	52
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
BsuRI	GGCC	1 cut(s)	188
BtsI	GCAGTG	2 cut(s)	189, 330
BtsIMutI	CAGTG	3 cut(s)	153, 189, 330
Cac8I	GCNNGC	3 cut(s)	163, 204, 371
Csp6I	GTAC	2 cut(s)	328, 381
CviAII	CATG	4 cut(s)	108, 316, 394, 463
CviJI	RGCY	8 cut(s)	106, 118, 179, 188, 202, 293, 300, 467
CviKI_1	RGCY	8 cut(s)	106, 118, 179, 188, 202, 293, 300, 467
CviQI	GTAC	2 cut(s)	328, 381
DpnI	GATC	3 cut(s)	38, 246, 429
DpnII	GATC	3 cut(s)	36, 244, 427
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	283
EciI	GGCGGA	1 cut(s)	416
Ecl136II	GAGCTC	1 cut(s)	293
Eco24I	GRGCYC	1 cut(s)	295
Eco32I	GATATC	1 cut(s)	535
Eco53kI	GAGCTC	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	364
EcoICRI	GAGCTC	1 cut(s)	293
EcoRV	GATATC	1 cut(s)	535
EcoT38I	GRGCYC	1 cut(s)	295
FaeI	CATG	4 cut(s)	111, 319, 397, 466
FatI	CATG	4 cut(s)	107, 315, 393, 462
Fnu4HI	GCNGC	1 cut(s)	180
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	2 cut(s)	423, 468
GluI	GCNGC	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	188
Hin1II	CATG	4 cut(s)	111, 319, 397, 466
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	98
HphI	GGTGA	2 cut(s)	34, 518
Hpy166II	GTNNAC	2 cut(s)	6, 330
Hpy188I	TCNGA	2 cut(s)	36, 443
Hpy8I	GTNNAC	2 cut(s)	6, 330
Hpy99I	CGWCG	1 cut(s)	443
HpyAV	CCTTC	2 cut(s)	55, 75
HpyCH4V	TGCA	5 cut(s)	111, 170, 182, 194, 480
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 176, 185, 341
Hsp92II	CATG	4 cut(s)	111, 319, 397, 466
Kzo9I	GATC	3 cut(s)	36, 244, 427
LguI	GCTCTTC	1 cut(s)	283
LpnPI	CCDG	5 cut(s)	183, 215, 291, 435, 488
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	2 cut(s)	423, 468
MaeIII	GTNAC	1 cut(s)	506
MalI	GATC	3 cut(s)	38, 246, 429
MboI	GATC	3 cut(s)	36, 244, 427
MboII	GAAGA	5 cut(s)	23, 52, 260, 300, 451
MflI	RGATCY	1 cut(s)	427
MhlI	GDGCHC	3 cut(s)	126, 295, 375
MlsI	TGGCCA	1 cut(s)	188
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	2 cut(s)	265, 421
MnlI	CCTC	6 cut(s)	50, 108, 258, 437, 464, 533
Mox20I	TGGCCA	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	353
Msp20I	TGGCCA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	179
MwoI	GCNNNNNNNGC	4 cut(s)	167, 176, 185, 341
NdeII	GATC	3 cut(s)	36, 244, 427
NlaIII	CATG	4 cut(s)	111, 319, 397, 466
NmuCI	GTSAC	1 cut(s)	506
OliI	CACNNNNGTG	1 cut(s)	353
PaeR7I	CTCGAG	1 cut(s)	364
PciSI	GCTCTTC	1 cut(s)	283
PkrI	GCNGC	1 cut(s)	181
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
Psp124BI	GAGCTC	1 cut(s)	295
PspXI	VCTCGAGB	1 cut(s)	364
PstI	CTGCAG	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	427
PvuII	CAGCTG	1 cut(s)	179
RsaI	GTAC	2 cut(s)	329, 382
RsaNI	GTAC	2 cut(s)	328, 381
RseI	CAYNNNNRTG	1 cut(s)	353
SacI	GAGCTC	1 cut(s)	295
SapI	GCTCTTC	1 cut(s)	283
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	3 cut(s)	36, 244, 427
SchI	GAGTC	1 cut(s)	107
SduI	GDGCHC	3 cut(s)	126, 295, 375
SetI	ASST	4 cut(s)	47, 181, 295, 485
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	2 cut(s)	9, 180
Sfr274I	CTCGAG	1 cut(s)	364
SlaI	CTCGAG	1 cut(s)	364
SmiMI	CAYNNNNRTG	1 cut(s)	353
SmlI	CTYRAG	2 cut(s)	294, 364
SmoI	CTYRAG	2 cut(s)	294, 364
SsiI	CCGC	2 cut(s)	212, 401
SspMI	CTAG	2 cut(s)	423, 468
SstI	GAGCTC	1 cut(s)	295
TaqI	TCGA	2 cut(s)	101, 365
TaqII	GACCGA	1 cut(s)	424
TatI	WGTACW	1 cut(s)	327
TscAI	CASTG	3 cut(s)	160, 189, 337
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	3 cut(s)	37, 332, 451
TspRI	CASTG	3 cut(s)	160, 189, 337
XhoI	CTCGAG	1 cut(s)	364
XspI	CTAG	2 cut(s)	423, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.