Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004981

Physical Location & Seq

Genomic Coordinates Reverse (-)

24628880 .. 24630587

Gene Structure 1708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023497

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTCAACTTTAGAAGCAAAAAGTTCCATTCTTTTGGTCCTCACATTCATGTTGGTGTTCCCATCTGTTTTGGCAACCAAAAATCCATTCAAAGATTCGAAACCATGCAAGAGGCTTGTGTTCTATTACCACGACACCCTATTCAACGGCACGGATGCGACCAATGCAACATCTGCTGCTGTAGCCAATATAACGGGGCTTGACAGAATGCACAAATTTGGTTTGCTGGACGACTACTCTACTTGGCTTGCCTACACTTTGGTGTTCAACTCGAGCGAGCACAAGGCCGGGGGCCGATATGAGGAAGTCATGGTTGGTCCCAAGCCTAACCAATACCTCAGAAACCGGGCCATCCAACTAGTCTACTCACCTGGTGGGATCAGGCAGGGGTGGATCCAGGATTTGAGGTTCGGTGGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0018130 GO:0018904 GO:0018958 GO:0019438 GO:0019748 GO:0030234 GO:0042349 GO:0042537 GO:0044237 GO:0044249 GO:0044281 GO:0044550 GO:0046189 GO:0046483 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901360 GO:1901362 GO:1901503 GO:1901576 GO:1901598 GO:1901599 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

141

Amino Acids

15.64

Weight (kDa)

9.27

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64160 AT4G23690
fragaria_vesca	FvH4_5g03711 FvH4_5g03720
malus_domestica	MD06G1096600.v1.1 MD14G1116900.v1.1
prunus_persica	Prupe.5G111400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480301 RchiOBHm_Chr7g0195991 RchiOBHm_Chr7g0196001
rosa_laevigata	RLG00000004076 RLG00000023497
rosa_multiflora	Rmu_sc0000311.1_g000009 Rmu_sc0001640.1_g000015 Rmu_sc0005575.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259960
rosa_rugosa	Rorug07G0028700 Rorug07G0028900
rosa_samantha	Rh3AG233800 Rh3BG266100 Rh3CG263800 Rh7AG155400 Rh7BG157300 Rh7BG157400 Rh7CG160800 Rh7DG156400 Rh7DG156500
rosa_wichuraiana	Rw3G021010 Rw7G013290 Rw7G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	363
AclWI	GGATC	3 cut(s)	386, 388, 401
AcsI	RAATTY	1 cut(s)	215
AdeI	CACNNNGTG	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	3 cut(s)	91, 145, 268
AhlI	ACTAGT	1 cut(s)	358
AjnI	CCWGG	2 cut(s)	370, 396
AjuI	GAANNNNNNNTTGG	4 cut(s)	71, 103, 297, 329
AleI	CACNNNNGTG	1 cut(s)	260
AloI	GAACNNNNNNTCC	1 cut(s)	392
Alw21I	GWGCWC	1 cut(s)	282
AlwI	GGATC	3 cut(s)	386, 388, 401
Ama87I	CYCGRG	1 cut(s)	271
AoxI	GGCC	3 cut(s)	285, 292, 348
ApeKI	GCWGC	1 cut(s)	176
ApoI	RAATTY	1 cut(s)	215
AspS9I	GGNCC	4 cut(s)	37, 292, 317, 348
AsuC2I	CCSGG	2 cut(s)	289, 347
AsuHPI	GGTGA	1 cut(s)	360
AsuII	TTCGAA	1 cut(s)	98
AvaI	CYCGRG	1 cut(s)	271
AvaII	GGWCC	2 cut(s)	37, 317
BamHI	GGATCC	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	2 cut(s)	70, 359
BceAI	ACGGC	1 cut(s)	163
BciT130I	CCWGG	2 cut(s)	372, 398
BcnI	CCSGG	2 cut(s)	289, 347
BcuI	ACTAGT	1 cut(s)	358
BfaI	CTAG	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	180
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	4 cut(s)	289, 347, 372, 398
Bme18I	GGWCC	2 cut(s)	37, 317
BmeT110I	CYCGRG	1 cut(s)	271
BmgT120I	GGNCC	4 cut(s)	37, 292, 317, 348
BmiI	GGNNCC	3 cut(s)	293, 319, 395
BmrFI	CCNGG	4 cut(s)	289, 347, 372, 398
BmsI	GCATC	1 cut(s)	145
Bpu14I	TTCGAA	1 cut(s)	98
BpuMI	CCSGG	2 cut(s)	289, 347
BsaJI	CCNNGG	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
BseBI	CCWGG	2 cut(s)	372, 398
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	2 cut(s)	160, 351
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMII	CTCAG	1 cut(s)	352
BseXI	GCAGC	1 cut(s)	163
BshFI	GGCC	3 cut(s)	287, 294, 350
BsiHKAI	GWGCWC	1 cut(s)	282
BsiHKCI	CYCGRG	1 cut(s)	271
BsiSI	CCGG	2 cut(s)	288, 346
BslFI	GGGAC	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	303
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	3 cut(s)	287, 294, 350
BsoBI	CYCGRG	1 cut(s)	271
Bsp119I	TTCGAA	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	2 cut(s)	378, 393
BspANI	GGCC	3 cut(s)	287, 294, 350
BspCNI	CTCAG	1 cut(s)	351
BspLI	GGNNCC	3 cut(s)	293, 319, 395
BspPI	GGATC	3 cut(s)	386, 388, 401
BspT104I	TTCGAA	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	2 cut(s)	378, 393
Bst2UI	CCWGG	2 cut(s)	372, 398
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstBI	TTCGAA	1 cut(s)	98
BstC8I	GCNNGC	2 cut(s)	249, 278
BstDEI	CTNAG	1 cut(s)	338
BstF5I	GGATG	2 cut(s)	160, 351
BstKTI	GATC	2 cut(s)	381, 396
BstMBI	GATC	2 cut(s)	378, 393
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 173, 182
BstNI	CCWGG	2 cut(s)	372, 398
BstSCI	CCNGG	4 cut(s)	287, 345, 370, 396
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	393
BstXI	CCANNNNNNTGG	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	393
BsuRI	GGCC	3 cut(s)	287, 294, 350
BtsCI	GGATG	2 cut(s)	160, 351
Cac8I	GCNNGC	2 cut(s)	249, 278
Cfr13I	GGNCC	4 cut(s)	37, 292, 317, 348
CsiI	ACCWGGT	1 cut(s)	370
CviAII	CATG	3 cut(s)	49, 105, 310
CviJI	RGCY	9 cut(s)	115, 185, 199, 247, 287, 294, 325, 350, 419
CviKI_1	RGCY	9 cut(s)	115, 185, 199, 247, 287, 294, 325, 350, 419
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	2 cut(s)	380, 395
DpnII	GATC	2 cut(s)	378, 393
DraIII	CACNNNGTG	1 cut(s)	374
Eco47I	GGWCC	2 cut(s)	37, 317
Eco88I	CYCGRG	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	370, 396
FaeI	CATG	3 cut(s)	52, 108, 313
FaiI	YATR	5 cut(s)	50, 106, 191, 300, 311
FaqI	GGGAC	1 cut(s)	303
FatI	CATG	3 cut(s)	48, 104, 309
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	2 cut(s)	167, 338
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	1 cut(s)	359
GluI	GCNGC	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	287, 294, 350
HapII	CCGG	2 cut(s)	288, 346
Hin1II	CATG	3 cut(s)	52, 108, 313
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	2 cut(s)	288, 346
HphI	GGTGA	1 cut(s)	360
Hpy166II	GTNNAC	2 cut(s)	6, 364
Hpy188I	TCNGA	1 cut(s)	341
Hpy8I	GTNNAC	2 cut(s)	6, 364
HpyCH4V	TGCA	3 cut(s)	108, 167, 211
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 173, 182
HpyF3I	CTNAG	1 cut(s)	338
Hsp92II	CATG	3 cut(s)	52, 108, 313
Kzo9I	GATC	2 cut(s)	378, 393
LpnPI	CCDG	9 cut(s)	212, 301, 357, 359, 367, 371, 383, 384, 410
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	1 cut(s)	145
MabI	ACCWGGT	1 cut(s)	370
MaeI	CTAG	1 cut(s)	359
MalI	GATC	2 cut(s)	380, 395
MboI	GATC	2 cut(s)	378, 393
MflI	RGATCY	1 cut(s)	393
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	5 cut(s)	50, 105, 295, 347, 399
MslI	CAYNNNNRTG	3 cut(s)	47, 53, 260
MspI	CCGG	2 cut(s)	288, 346
MspR9I	CCNGG	4 cut(s)	289, 347, 372, 398
Mva1269I	GAATGC	1 cut(s)	213
MvaI	CCWGG	2 cut(s)	372, 398
MwoI	GCNNNNNNNGC	3 cut(s)	164, 173, 182
NciI	CCSGG	2 cut(s)	289, 347
NdeII	GATC	2 cut(s)	378, 393
NlaIII	CATG	3 cut(s)	52, 108, 313
NlaIV	GGNNCC	3 cut(s)	293, 319, 395
NspV	TTCGAA	1 cut(s)	98
OliI	CACNNNNGTG	1 cut(s)	260
PaeR7I	CTCGAG	1 cut(s)	271
PctI	GAATGC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	95
PfoI	TCCNGGA	1 cut(s)	396
PkrI	GCNGC	1 cut(s)	178
Psp6I	CCWGG	2 cut(s)	370, 396
PspGI	CCWGG	2 cut(s)	370, 396
PspN4I	GGNNCC	3 cut(s)	293, 319, 395
PspPI	GGNCC	4 cut(s)	37, 292, 317, 348
PspXI	VCTCGAGB	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	393
RseI	CAYNNNNRTG	3 cut(s)	47, 53, 260
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	2 cut(s)	378, 393
Sau96I	GGNCC	4 cut(s)	37, 292, 317, 348
ScrFI	CCNGG	4 cut(s)	289, 347, 372, 398
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	3 cut(s)	339, 373, 410
SexAI	ACCWGGT	1 cut(s)	370
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	1 cut(s)	180
Sfr274I	CTCGAG	1 cut(s)	271
SfuI	TTCGAA	1 cut(s)	98
SinI	GGWCC	2 cut(s)	37, 317
SlaI	CTCGAG	1 cut(s)	271
SmiMI	CAYNNNNRTG	3 cut(s)	47, 53, 260
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
SpeI	ACTAGT	1 cut(s)	358
Sse9I	AATT	1 cut(s)	215
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	4 cut(s)	287, 345, 370, 396
TaqI	TCGA	2 cut(s)	98, 272
TasI	AATT	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	95
TseI	GCWGC	1 cut(s)	176
TspDTI	ATGAA	1 cut(s)	37
TspGWI	ACGGA	1 cut(s)	167
VpaK11BI	GGWCC	2 cut(s)	37, 317
XapI	RAATTY	1 cut(s)	215
XhoI	CTCGAG	1 cut(s)	271
XmiI	GTMKAC	1 cut(s)	363
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.