Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004981

Physical Location & Seq

Genomic Coordinates Reverse (-)

2171606 .. 2172151

Gene Structure 546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g03711.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCAACTTTTGTAGAAAAAAGTTATCTCATGATTTTGGTCCTCATTGCATTCCAATCTGTTTCAGCAACTAAACACTCGATCAAAGAGTCGAAACCATGCAAGAGGTTTGTGCTCTACTACCACGACACCCTATTCAACGGCACGGATGTGAACAATGCAACATCAGCTAGGGCAGCAAATGCAACGGGGCTCGGCAACTACAAGTTCGGAATGCTGGTTGTCTTCAATGATCCTCTTACGAAAGACCACCATCTTCTGTCTCCGGCAATCGGAAGAGCTCAAGGCTTCTATTTCTACGACATGAAGGACGACTACACTGCATGGTTTGCCTACACTTTGGTATTCAACTCGAGCCAGCACAAGGGTACGCTCAATATCATGGGGGCGGATTTGATGTATGCTGAGACTAGGGATCTTTCTGTAGTTGGAGGAACGGGAGATTTCTTCATGGCTAGAGGGATCTGCACATTCAAGACTGATACTTTTCAGGGTGCCAACTATTTTCGTCTCCAAATGGACATCAAGTTGTATGAATGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0018130 GO:0018904 GO:0018958 GO:0019438 GO:0019748 GO:0030234 GO:0042349 GO:0042537 GO:0044237 GO:0044249 GO:0044281 GO:0044550 GO:0046189 GO:0046483 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901360 GO:1901362 GO:1901503 GO:1901576 GO:1901598 GO:1901599 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

182

Amino Acids

20.48

Weight (kDa)

7.71

Isoelectric Point (pI)

31.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	34 - 176	1.7e-37	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64160 AT4G23690
fragaria_vesca	FvH4_5g03711 FvH4_5g03720
malus_domestica	MD06G1096600.v1.1 MD14G1116900.v1.1
prunus_persica	Prupe.5G111400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480301 RchiOBHm_Chr7g0195991 RchiOBHm_Chr7g0196001
rosa_laevigata	RLG00000004076 RLG00000023497
rosa_multiflora	Rmu_sc0000311.1_g000009 Rmu_sc0001640.1_g000015 Rmu_sc0005575.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259960
rosa_rugosa	Rorug07G0028700 Rorug07G0028900
rosa_samantha	Rh3AG233800 Rh3BG266100 Rh3CG263800 Rh7AG155400 Rh7BG157300 Rh7BG157400 Rh7CG160800 Rh7DG156400 Rh7DG156500
rosa_wichuraiana	Rw3G021010 Rw7G013290 Rw7G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	494
AciI	CCGC	1 cut(s)	389
AclWI	GGATC	3 cut(s)	227, 423, 470
AfaI	GTAC	1 cut(s)	370
AfiI	CCNNNNNNNGG	2 cut(s)	272, 364
AgsI	TTSAA	4 cut(s)	139, 229, 349, 475
AleI	CACNNNNGTG	1 cut(s)	149
AluBI	AGCT	2 cut(s)	170, 281
AluI	AGCT	2 cut(s)	170, 281
Alw21I	GWGCWC	2 cut(s)	117, 283
Alw26I	GTCTC	3 cut(s)	267, 401, 515
AlwI	GGATC	3 cut(s)	227, 423, 470
Ama87I	CYCGRG	1 cut(s)	352
ApeKI	GCWGC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	352
AvaII	GGWCC	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	494
BanII	GRGCYC	2 cut(s)	195, 283
BarI	GAAGNNNNNNTAC	2 cut(s)	299, 331
BbsI	GAAGAC	1 cut(s)	217
Bbv12I	GWGCWC	2 cut(s)	117, 283
BbvI	GCAGC	1 cut(s)	188
BccI	CCATC	1 cut(s)	261
BceAI	ACGGC	1 cut(s)	157
BcgI	CGANNNNNNTGC	2 cut(s)	302, 336
BcoDI	GTCTC	3 cut(s)	267, 401, 515
BfaI	CTAG	3 cut(s)	171, 411, 456
BfmI	CTRYAG	1 cut(s)	423
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	496
BpiI	GAAGAC	1 cut(s)	217
BpuEI	CTTGAG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 364
Bse3DI	GCAATG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	2 cut(s)	272, 364
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	396
BseXI	GCAGC	1 cut(s)	188
BsgI	GTGCAG	1 cut(s)	451
BshNI	GGYRCC	1 cut(s)	494
BsiHKAI	GWGCWC	2 cut(s)	117, 283
BsiHKCI	CYCGRG	1 cut(s)	352
BsiSI	CCGG	1 cut(s)	266
BslI	CCNNNNNNNGG	2 cut(s)	272, 364
BsmAI	GTCTC	3 cut(s)	267, 401, 515
BsmBI	CGTCTC	1 cut(s)	515
BsmI	GAATGC	2 cut(s)	50, 219
BsoBI	CYCGRG	1 cut(s)	352
Bsp1286I	GDGCHC	3 cut(s)	117, 195, 283
Bsp143I	GATC	4 cut(s)	81, 232, 415, 462
BspACI	CCGC	1 cut(s)	389
BspCNI	CTCAG	1 cut(s)	397
BspHI	TCATGA	1 cut(s)	30
BspLI	GGNNCC	1 cut(s)	496
BspPI	GGATC	3 cut(s)	227, 423, 470
BspQI	GCTCTTC	1 cut(s)	271
BspT107I	GGYRCC	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	45
BssMI	GATC	4 cut(s)	81, 232, 415, 462
Bst6I	CTCTTC	1 cut(s)	271
BstAPI	GCANNNNNTGC	2 cut(s)	182, 329
BstC8I	GCNNGC	1 cut(s)	359
BstDEI	CTNAG	1 cut(s)	405
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	4 cut(s)	84, 235, 418, 465
BstMAI	GTCTC	3 cut(s)	267, 401, 515
BstMBI	GATC	4 cut(s)	81, 232, 415, 462
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 176, 182, 329
BstSFI	CTRYAG	1 cut(s)	423
BstV1I	GCAGC	1 cut(s)	188
BstV2I	GAAGAC	1 cut(s)	217
BstX2I	RGATCY	2 cut(s)	415, 462
BstYI	RGATCY	2 cut(s)	415, 462
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	1 cut(s)	359
CciI	TCATGA	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	369
CviAII	CATG	6 cut(s)	31, 99, 304, 324, 382, 451
CviJI	RGCY	6 cut(s)	170, 193, 281, 288, 357, 455
CviKI_1	RGCY	6 cut(s)	170, 193, 281, 288, 357, 455
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	4 cut(s)	83, 234, 417, 464
DpnII	GATC	4 cut(s)	81, 232, 415, 462
Eam1104I	CTCTTC	1 cut(s)	271
EarI	CTCTTC	1 cut(s)	271
EciI	GGCGGA	1 cut(s)	404
Ecl136II	GAGCTC	1 cut(s)	281
Eco24I	GRGCYC	2 cut(s)	195, 283
Eco47I	GGWCC	1 cut(s)	40
Eco53kI	GAGCTC	1 cut(s)	281
Eco88I	CYCGRG	1 cut(s)	352
EcoICRI	GAGCTC	1 cut(s)	281
EcoT38I	GRGCYC	2 cut(s)	195, 283
Esp3I	CGTCTC	1 cut(s)	515
FaeI	CATG	6 cut(s)	34, 102, 307, 327, 385, 454
FaiI	YATR	8 cut(s)	32, 100, 305, 325, 383, 402, 452, 534
FatI	CATG	6 cut(s)	30, 98, 303, 323, 381, 450
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	2 cut(s)	195, 283
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	3 cut(s)	171, 411, 456
GluI	GCNGC	1 cut(s)	177
HapII	CCGG	1 cut(s)	266
Hin1II	CATG	6 cut(s)	34, 102, 307, 327, 385, 454
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	1 cut(s)	266
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	2 cut(s)	212, 275
Hpy188III	TCNNGA	2 cut(s)	31, 475
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	1 cut(s)	301
HpyCH4V	TGCA	6 cut(s)	50, 102, 161, 185, 323, 468
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 176, 182, 329
HpyF3I	CTNAG	1 cut(s)	405
Hsp92II	CATG	6 cut(s)	34, 102, 307, 327, 385, 454
Kzo9I	GATC	4 cut(s)	81, 232, 415, 462
LguI	GCTCTTC	1 cut(s)	271
LpnPI	CCDG	4 cut(s)	203, 279, 371, 476
Lsp1109I	GCAGC	1 cut(s)	188
MaeI	CTAG	3 cut(s)	171, 411, 456
MalI	GATC	4 cut(s)	83, 234, 417, 464
MboI	GATC	4 cut(s)	81, 232, 415, 462
MboII	GAAGA	4 cut(s)	217, 248, 288, 439
MflI	RGATCY	2 cut(s)	415, 462
MhlI	GDGCHC	3 cut(s)	117, 195, 283
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	409
MnlI	CCTC	5 cut(s)	53, 99, 246, 425, 452
MseI	TTAA	1 cut(s)	544
MslI	CAYNNNNRTG	1 cut(s)	149
MspI	CCGG	1 cut(s)	266
Mva1269I	GAATGC	2 cut(s)	50, 219
MwoI	GCNNNNNNNGC	4 cut(s)	167, 176, 182, 329
NdeII	GATC	4 cut(s)	81, 232, 415, 462
NlaIII	CATG	6 cut(s)	34, 102, 307, 327, 385, 454
NlaIV	GGNNCC	1 cut(s)	496
NmeAIII	GCCGAG	1 cut(s)	174
OliI	CACNNNNGTG	1 cut(s)	149
PaeR7I	CTCGAG	1 cut(s)	352
PagI	TCATGA	1 cut(s)	30
PciSI	GCTCTTC	1 cut(s)	271
PctI	GAATGC	2 cut(s)	50, 219
PkrI	GCNGC	1 cut(s)	178
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
Psp124BI	GAGCTC	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	496
PspPI	GGNCC	1 cut(s)	40
PspXI	VCTCGAGB	1 cut(s)	352
PsuI	RGATCY	2 cut(s)	415, 462
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
RseI	CAYNNNNRTG	1 cut(s)	149
SacI	GAGCTC	1 cut(s)	283
SapI	GCTCTTC	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	544
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	4 cut(s)	81, 232, 415, 462
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	1 cut(s)	98
SduI	GDGCHC	3 cut(s)	117, 195, 283
SetI	ASST	3 cut(s)	110, 172, 283
SfcI	CTRYAG	1 cut(s)	423
Sfr274I	CTCGAG	1 cut(s)	352
SinI	GGWCC	1 cut(s)	40
SlaI	CTCGAG	1 cut(s)	352
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	2 cut(s)	282, 352
SmoI	CTYRAG	2 cut(s)	282, 352
SsiI	CCGC	1 cut(s)	389
SspMI	CTAG	3 cut(s)	171, 411, 456
SstI	GAGCTC	1 cut(s)	283
TaqI	TCGA	3 cut(s)	80, 92, 353
Tru1I	TTAA	1 cut(s)	544
Tru9I	TTAA	1 cut(s)	544
TscAI	CASTG	1 cut(s)	325
TseI	GCWGC	1 cut(s)	176
TspDTI	ATGAA	2 cut(s)	320, 439
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	40
XhoI	CTCGAG	1 cut(s)	352
XspI	CTAG	3 cut(s)	171, 411, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.