Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0004981

Physical Location & Seq

Genomic Coordinates Forward (+)

24103901 .. 24104455

Gene Structure 555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG233800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCAACTTTAGTAGCAAAAAGTTCCATTCTTTTGGTCCTCACATTCATGTTGGTGTTCCCATCTGTTTTGGCAACCAAAAATCCATTCAAAGAGTCGAAACCATGCAAGAGGCTTGTGTTCTATTTCCACGACACCCTATTCAACGGCACGGATACGACCAATGCAACATCTGCTGCTGTAGCCAATATAACAGGGCTTGACAGAAAGCACAAATTTGGTTTGCTGGTTGTCTTCAACGATCCTCTGACCAAAGACCACCATCTTCTGTCTCCTCCCGTCGGAAGAGCTCAAGGCTTCTATTTCTTTGACATGAAGGACGACTACTCTGCTTGGCTTGCCTACACTTTGGTGTTCAACTCGAGCGAGCACAAGGGTACACTCAATATCATGGGGGCGGATTTGATTTATGAAAAAACTAGAGATCTTTCGGTTGTCGGAGGGACGGGAGATTTCTTCATGGCTCGAGGGATATGCACAATTCAAACTGACACTATTCAGGATGACTACTATTTTCGCCTCAAGATGGATATCAAGTTGTATGAATGTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0018130 GO:0018904 GO:0018958 GO:0019438 GO:0019748 GO:0030234 GO:0042349 GO:0042537 GO:0044237 GO:0044249 GO:0044281 GO:0044550 GO:0046189 GO:0046483 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901360 GO:1901362 GO:1901503 GO:1901576 GO:1901598 GO:1901599 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

184

Amino Acids

20.83

Weight (kDa)

6.95

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	36 - 179	1.4e-38	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64160 AT4G23690
fragaria_vesca	FvH4_5g03711 FvH4_5g03720
malus_domestica	MD06G1096600.v1.1 MD14G1116900.v1.1
prunus_persica	Prupe.5G111400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480301 RchiOBHm_Chr7g0195991 RchiOBHm_Chr7g0196001
rosa_laevigata	RLG00000004076 RLG00000023497
rosa_multiflora	Rmu_sc0000311.1_g000009 Rmu_sc0001640.1_g000015 Rmu_sc0005575.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259960
rosa_rugosa	Rorug07G0028700 Rorug07G0028900
rosa_samantha	Rh3AG233800 Rh3BG266100 Rh3CG263800 Rh7AG155400 Rh7BG157300 Rh7BG157400 Rh7CG160800 Rh7DG156400 Rh7DG156500
rosa_wichuraiana	Rw3G021010 Rw7G013290 Rw7G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	398
AclWI	GGATC	1 cut(s)	236
AcsI	RAATTY	1 cut(s)	215
AfaI	GTAC	1 cut(s)	379
AfiI	CCNNNNNNNGG	2 cut(s)	281, 526
AgsI	TTSAA	5 cut(s)	91, 145, 238, 358, 485
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AleI	CACNNNNGTG	1 cut(s)	350
AluBI	AGCT	1 cut(s)	290
AluI	AGCT	1 cut(s)	290
Alw21I	GWGCWC	2 cut(s)	292, 372
Alw26I	GTCTC	1 cut(s)	276
AlwI	GGATC	1 cut(s)	236
Ama87I	CYCGRG	2 cut(s)	361, 465
ApeKI	GCWGC	1 cut(s)	176
ApoI	RAATTY	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	37
AvaI	CYCGRG	2 cut(s)	361, 465
AvaII	GGWCC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	292
BarI	GAAGNNNNNNTAC	2 cut(s)	308, 340
BbsI	GAAGAC	1 cut(s)	226
Bbv12I	GWGCWC	2 cut(s)	292, 372
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	3 cut(s)	70, 270, 520
BceAI	ACGGC	1 cut(s)	163
BcgI	CGANNNNNNTGC	4 cut(s)	311, 345, 456, 490
BciVI	GTATCC	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	276
BfaI	CTAG	1 cut(s)	420
BfmI	CTRYAG	1 cut(s)	180
BfuI	GTATCC	1 cut(s)	148
BglII	AGATCT	1 cut(s)	424
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	37
BmeT110I	CYCGRG	2 cut(s)	361, 465
BmgT120I	GGNCC	1 cut(s)	37
BpiI	GAAGAC	1 cut(s)	226
BpuEI	CTTGAG	2 cut(s)	276, 506
BsaBI	GATNNNNATC	1 cut(s)	530
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 526
Bse8I	GATNNNNATC	1 cut(s)	530
BseGI	GGATG	1 cut(s)	508
BseJI	GATNNNNATC	1 cut(s)	530
BseLI	CCNNNNNNNGG	2 cut(s)	281, 526
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	163
BsiHKAI	GWGCWC	2 cut(s)	292, 372
BsiHKCI	CYCGRG	2 cut(s)	361, 465
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	2 cut(s)	281, 526
BsmAI	GTCTC	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	457
BsoBI	CYCGRG	2 cut(s)	361, 465
Bsp1286I	GDGCHC	2 cut(s)	292, 372
Bsp143I	GATC	2 cut(s)	241, 424
BspACI	CCGC	1 cut(s)	398
BspPI	GGATC	1 cut(s)	236
BspQI	GCTCTTC	1 cut(s)	280
BssMI	GATC	2 cut(s)	241, 424
Bst6I	CTCTTC	1 cut(s)	280
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	339, 368
BstF5I	GGATG	1 cut(s)	508
BstKTI	GATC	2 cut(s)	244, 427
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	2 cut(s)	241, 424
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 182, 338
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	424
BstXI	CCANNNNNNTGG	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	424
BsuI	GTATCC	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	508
Cac8I	GCNNGC	2 cut(s)	339, 368
Cfr13I	GGNCC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	378
CviAII	CATG	5 cut(s)	49, 105, 313, 391, 460
CviJI	RGCY	7 cut(s)	115, 185, 199, 290, 297, 337, 464
CviKI_1	RGCY	7 cut(s)	115, 185, 199, 290, 297, 337, 464
CviQI	GTAC	1 cut(s)	378
DpnI	GATC	2 cut(s)	243, 426
DpnII	GATC	2 cut(s)	241, 424
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
EciI	GGCGGA	1 cut(s)	413
Ecl136II	GAGCTC	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	292
Eco32I	GATATC	1 cut(s)	532
Eco47I	GGWCC	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	290
Eco88I	CYCGRG	2 cut(s)	361, 465
EcoICRI	GAGCTC	1 cut(s)	290
EcoRV	GATATC	1 cut(s)	532
EcoT38I	GRGCYC	1 cut(s)	292
FaeI	CATG	5 cut(s)	52, 108, 316, 394, 463
FaiI	YATR	9 cut(s)	50, 106, 191, 314, 392, 411, 461, 475, 543
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	5 cut(s)	48, 104, 312, 390, 459
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	1 cut(s)	515
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	1 cut(s)	420
GluI	GCNGC	1 cut(s)	177
Hin1II	CATG	5 cut(s)	52, 108, 316, 394, 463
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	95
Hpy166II	GTNNAC	2 cut(s)	6, 380
Hpy188I	TCNGA	3 cut(s)	249, 284, 440
Hpy188III	TCNNGA	2 cut(s)	500, 523
Hpy8I	GTNNAC	2 cut(s)	6, 380
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	1 cut(s)	310
HpyCH4V	TGCA	3 cut(s)	108, 167, 477
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 182, 338
Hsp92II	CATG	5 cut(s)	52, 108, 316, 394, 463
Kzo9I	GATC	2 cut(s)	241, 424
LguI	GCTCTTC	1 cut(s)	280
LpnPI	CCDG	3 cut(s)	180, 212, 485
Lsp1109I	GCAGC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	420
MalI	GATC	2 cut(s)	243, 426
MboI	GATC	2 cut(s)	241, 424
MboII	GAAGA	4 cut(s)	226, 257, 297, 448
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	2 cut(s)	292, 372
MluCI	AATT	2 cut(s)	215, 480
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	2 cut(s)	262, 418
MnlI	CCTC	7 cut(s)	50, 105, 255, 285, 434, 461, 530
MslI	CAYNNNNRTG	3 cut(s)	47, 53, 350
MwoI	GCNNNNNNNGC	3 cut(s)	173, 182, 338
NdeII	GATC	2 cut(s)	241, 424
NlaIII	CATG	5 cut(s)	52, 108, 316, 394, 463
OliI	CACNNNNGTG	1 cut(s)	350
PaeR7I	CTCGAG	2 cut(s)	361, 465
PciSI	GCTCTTC	1 cut(s)	280
PkrI	GCNGC	1 cut(s)	178
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Psp124BI	GAGCTC	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	37
PspXI	VCTCGAGB	2 cut(s)	361, 465
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
RseI	CAYNNNNRTG	3 cut(s)	47, 53, 350
SacI	GAGCTC	1 cut(s)	292
SapI	GCTCTTC	1 cut(s)	280
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	2 cut(s)	241, 424
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	1 cut(s)	104
SduI	GDGCHC	2 cut(s)	292, 372
SetI	ASST	1 cut(s)	292
SfcI	CTRYAG	1 cut(s)	180
Sfr274I	CTCGAG	2 cut(s)	361, 465
SinI	GGWCC	1 cut(s)	37
SlaI	CTCGAG	2 cut(s)	361, 465
SmiMI	CAYNNNNRTG	3 cut(s)	47, 53, 350
SmlI	CTYRAG	4 cut(s)	291, 361, 465, 521
SmoI	CTYRAG	4 cut(s)	291, 361, 465, 521
Sse9I	AATT	2 cut(s)	215, 480
SsiI	CCGC	1 cut(s)	398
SspMI	CTAG	1 cut(s)	420
SstI	GAGCTC	1 cut(s)	292
TaqI	TCGA	3 cut(s)	98, 362, 466
TasI	AATT	2 cut(s)	215, 480
TseI	GCWGC	1 cut(s)	176
TspDTI	ATGAA	4 cut(s)	37, 329, 426, 448
TspGWI	ACGGA	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	1 cut(s)	215
XhoI	CTCGAG	2 cut(s)	361, 465
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.