Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004981

Physical Location & Seq

Genomic Coordinates Reverse (-)

12338829 .. 12339967

Gene Structure 1139 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G23690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCATTTCTAGTAGAGAAACAACTCTTCAAAGCCCTCTTCTCATTCTTCTTATTAGTTTTACTCTTCTCCGATACCGTCTTATCTTTCCGAAAAACAATCGACCAGAAAAAACCCTGCAAACACTTCTCGTTCTATTTCCATGACATCCTCTACGATGGCGACAATGTAGCAAACGCAACCTCCGCCGCCATCGTGAGCCCTCCAGGACTAGGAAACTTCAAGTTCGGTAAGTTTGTGATCTTTGATGGGCCCATAACAATGGACAAGAACTATCTCTCAAAACCCGTGGCTCGCGCACAAGGCTTCTATTTCTATGACATGAAGATGGACTTCAATTCGTGGTTTTCCTACACGTTGGTGTTTAACTCAACGGAACACAAAGGGACATTGAACATAATGGGTGCTGATTTGATGATGGAGCCAACAAGAGATCTATCGGTCGTTGGTGGGACAGGTGACTTCTTCATGGCTCGTGGGATCGCTACCTTCGTGACTGATTTATTTCAAGGGGCTAAGTATTTCCGAGTTAAGATGGATATTAAGCTCTATGAATGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0018130 GO:0018904 GO:0018958 GO:0019438 GO:0019748 GO:0030234 GO:0042349 GO:0042537 GO:0042802 GO:0042803 GO:0044237 GO:0044249 GO:0044281 GO:0044550 GO:0046189 GO:0046483 GO:0046983 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901360 GO:1901362 GO:1901503 GO:1901576 GO:1901598 GO:1901599 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

187

Amino Acids

21.41

Weight (kDa)

8.43

Isoelectric Point (pI)

24.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	40 - 182	5.3e-38	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64160 AT4G23690
fragaria_vesca	FvH4_5g03711 FvH4_5g03720
malus_domestica	MD06G1096600.v1.1 MD14G1116900.v1.1
prunus_persica	Prupe.5G111400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480301 RchiOBHm_Chr7g0195991 RchiOBHm_Chr7g0196001
rosa_laevigata	RLG00000004076 RLG00000023497
rosa_multiflora	Rmu_sc0000311.1_g000009 Rmu_sc0001640.1_g000015 Rmu_sc0005575.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259960
rosa_rugosa	Rorug07G0028700 Rorug07G0028900
rosa_samantha	Rh3AG233800 Rh3BG266100 Rh3CG263800 Rh7AG155400 Rh7BG157300 Rh7BG157400 Rh7CG160800 Rh7DG156400 Rh7DG156500
rosa_wichuraiana	Rw3G021010 Rw7G013290 Rw7G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	297
AciI	CCGC	2 cut(s)	186, 189
AclWI	GGATC	1 cut(s)	488
AfiI	CCNNNNNNNGG	1 cut(s)	212
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	5 cut(s)	31, 223, 337, 394, 509
AjnI	CCWGG	1 cut(s)	205
AleI	CACNNNNGTG	1 cut(s)	359
AluBI	AGCT	1 cut(s)	547
AluI	AGCT	1 cut(s)	547
AlwI	GGATC	1 cut(s)	488
AoxI	GGCC	1 cut(s)	251
ApaI	GGGCCC	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	251, 252
AsuHPI	GGTGA	1 cut(s)	470
BaeGI	GKGCMC	1 cut(s)	255
BanII	GRGCYC	2 cut(s)	203, 255
BauI	CACGAG	1 cut(s)	474
BccI	CCATC	6 cut(s)	152, 200, 242, 322, 412, 529
BciT130I	CCWGG	1 cut(s)	207
BfaI	CTAG	2 cut(s)	11, 212
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	1 cut(s)	207
BmgT120I	GGNCC	2 cut(s)	251, 252
BmiI	GGNNCC	2 cut(s)	253, 423
BmrFI	CCNGG	1 cut(s)	207
BpmI	CTGGAG	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	288
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseSI	GKGCMC	1 cut(s)	255
Bsh1236I	CGCG	1 cut(s)	297
Bsh1285I	CGRYCG	1 cut(s)	444
BshFI	GGCC	1 cut(s)	253
BsiEI	CGRYCG	1 cut(s)	444
BslFI	GGGAC	2 cut(s)	400, 466
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmFI	GGGAC	2 cut(s)	400, 466
BsnI	GGCC	1 cut(s)	253
Bsp120I	GGGCCC	1 cut(s)	251
Bsp1286I	GDGCHC	2 cut(s)	203, 255
Bsp143I	GATC	3 cut(s)	240, 433, 480
BspACI	CCGC	2 cut(s)	186, 189
BspANI	GGCC	1 cut(s)	253
BspFNI	CGCG	1 cut(s)	297
BspLI	GGNNCC	2 cut(s)	253, 423
BspPI	GGATC	1 cut(s)	488
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	3 cut(s)	240, 433, 480
BssSI	CACGAG	1 cut(s)	474
Bst2BI	CACGAG	1 cut(s)	474
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	79
Bst6I	CTCTTC	3 cut(s)	32, 44, 71
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	516
BstDSI	CCRYGG	1 cut(s)	288
BstF5I	GGATG	1 cut(s)	147
BstFNI	CGCG	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	3 cut(s)	243, 436, 483
BstMBI	GATC	3 cut(s)	240, 433, 480
BstMCI	CGRYCG	1 cut(s)	444
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 303
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	205
BstSLI	GKGCMC	1 cut(s)	255
BstUI	CGCG	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	433
BstXI	CCANNNNNNTGG	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	433
BsuRI	GGCC	1 cut(s)	253
BtgI	CCRYGG	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	295
CfoI	GCGC	1 cut(s)	299
Cfr13I	GGNCC	2 cut(s)	251, 252
CspCI	CAANNNNNGTGG	2 cut(s)	270, 305
CviAII	CATG	3 cut(s)	143, 322, 469
CviJI	RGCY	9 cut(s)	35, 201, 253, 293, 306, 424, 473, 515, 547
CviKI_1	RGCY	9 cut(s)	35, 201, 253, 293, 306, 424, 473, 515, 547
DdeI	CTNAG	1 cut(s)	516
DpnI	GATC	3 cut(s)	242, 435, 482
DpnII	GATC	3 cut(s)	240, 433, 480
Eam1104I	CTCTTC	3 cut(s)	32, 44, 71
EarI	CTCTTC	3 cut(s)	32, 44, 71
EciI	GGCGGA	1 cut(s)	175
Eco24I	GRGCYC	2 cut(s)	203, 255
EcoRII	CCWGG	1 cut(s)	205
EcoT38I	GRGCYC	2 cut(s)	203, 255
FaeI	CATG	3 cut(s)	146, 325, 472
FaiI	YATR	7 cut(s)	144, 257, 318, 323, 398, 470, 552
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FaqI	GGGAC	2 cut(s)	400, 466
FatI	CATG	3 cut(s)	142, 321, 468
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	1 cut(s)	134
FriOI	GRGCYC	2 cut(s)	203, 255
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	2 cut(s)	11, 212
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	1 cut(s)	189
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	253
HhaI	GCGC	1 cut(s)	299
Hin1II	CATG	3 cut(s)	146, 325, 472
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HphI	GGTGA	1 cut(s)	470
Hpy188I	TCNGA	3 cut(s)	73, 92, 527
Hpy188III	TCNNGA	2 cut(s)	196, 493
HpyAV	CCTTC	1 cut(s)	499
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4IV	ACGT	1 cut(s)	356
HpyCH4V	TGCA	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 303
HpyF3I	CTNAG	1 cut(s)	516
HpySE526I	ACGT	1 cut(s)	356
Hsp92II	CATG	3 cut(s)	146, 325, 472
HspAI	GCGC	1 cut(s)	297
Kzo9I	GATC	3 cut(s)	240, 433, 480
LmnI	GCTCC	1 cut(s)	421
LpnPI	CCDG	5 cut(s)	119, 130, 192, 219, 441
MaeI	CTAG	2 cut(s)	11, 212
MaeII	ACGT	1 cut(s)	356
MaeIII	GTNAC	3 cut(s)	458, 493, 557
MalI	GATC	3 cut(s)	242, 435, 482
MboI	GATC	3 cut(s)	240, 433, 480
MboII	GAAGA	6 cut(s)	19, 31, 40, 58, 337, 457
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	2 cut(s)	203, 255
MluCI	AATT	1 cut(s)	337
MnlI	CCTC	4 cut(s)	47, 161, 193, 213
MseI	TTAA	3 cut(s)	366, 531, 543
MslI	CAYNNNNRTG	3 cut(s)	260, 326, 359
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	2 cut(s)	185, 303
NdeII	GATC	3 cut(s)	240, 433, 480
NlaIII	CATG	3 cut(s)	146, 325, 472
NlaIV	GGNNCC	2 cut(s)	253, 423
NmuCI	GTSAC	2 cut(s)	458, 493
OliI	CACNNNNGTG	1 cut(s)	359
PcsI	WCGNNNNNNNCGW	1 cut(s)	489
PfoI	TCCNGGA	1 cut(s)	205
PkrI	GCNGC	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	2 cut(s)	253, 423
PspOMI	GGGCCC	1 cut(s)	251
PspPI	GGNCC	2 cut(s)	251, 252
PsuI	RGATCY	1 cut(s)	433
RseI	CAYNNNNRTG	3 cut(s)	260, 326, 359
SaqAI	TTAA	3 cut(s)	366, 531, 543
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	3 cut(s)	240, 433, 480
Sau96I	GGNCC	2 cut(s)	251, 252
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	2 cut(s)	203, 255
SetI	ASST	5 cut(s)	185, 359, 460, 491, 549
SmiMI	CAYNNNNRTG	3 cut(s)	260, 326, 359
Sse9I	AATT	1 cut(s)	337
SsiI	CCGC	2 cut(s)	186, 189
SspMI	CTAG	2 cut(s)	11, 212
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	1 cut(s)	79
TaiI	ACGT	1 cut(s)	359
TaqI	TCGA	1 cut(s)	102
TaqII	GACCGA	1 cut(s)	430
TasI	AATT	1 cut(s)	337
TauI	GCSGC	1 cut(s)	191
Tru1I	TTAA	3 cut(s)	366, 531, 543
Tru9I	TTAA	3 cut(s)	366, 531, 543
TseFI	GTSAC	2 cut(s)	458, 493
Tsp45I	GTSAC	2 cut(s)	458, 493
TspDTI	ATGAA	2 cut(s)	338, 457
TspGWI	ACGGA	1 cut(s)	389
XspI	CTAG	2 cut(s)	11, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.