Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001640.1

Orthogroup ID

OG0004981

Physical Location & Seq

Genomic Coordinates Reverse (-)

70111 .. 74355

Gene Structure 4245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001640.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atggcaacttttgtagaaaaaatttgtttcatcattttgatcctcattgcattccaatctgtttcggcaacgaaacattcaatcatagagtcgaaaccatgcaagaggctcgtgctctattaccacgacatccttttcaatggcactgatgtggcaaatgctacatctgctagggcagcaaatgggacgggcctcggcaactaccagtttggtatgctggttgtcttcaatgatcctctgaccaaagaccaccatcttctgtctcctgccgtcggaagagctcaaggcttctttttctatgacatgaaggacgactacactgcctggtttgcctacactttggtgttcaactcgagcgagcacaagggtacactcaatatcatgggggcggatttgatgtatgccgagactagggatctttcggtggttggaggaacgggagatttcttcatggctagagggatttgcacattcaagactgatacttttcagggtgccaactattttcgtctccaaatggacatcaagttgtatgaatgtcttgagcttaaagcgggaggtggtggcatcatcgctgatggtgacatcaacattggtggcggcggctgcgactgcgacgtgggtggtagttgcatcgacgctggtggcggcgacagtgcagtggctgcagtggccaatctaacagttttagattggtctaggcctgtagttgagcctgggcttcaagttttgctagggaaggcttcgcctagggatatctcgcttgtctggcttgcacattttgcagttgatcctcatgccacttgtaccaaggcccaatggacgttgtggaagtctcctatagcccgcaaggccctcaaggacctggtcctcatgttggtcgcgacttctattgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0018130 GO:0018904 GO:0018958 GO:0019438 GO:0019748 GO:0030234 GO:0042349 GO:0042537 GO:0044237 GO:0044249 GO:0044281 GO:0044550 GO:0046189 GO:0046483 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901360 GO:1901362 GO:1901503 GO:1901576 GO:1901598 GO:1901599 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

299

Amino Acids

32.26

Weight (kDa)

5.77

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64160 AT4G23690
fragaria_vesca	FvH4_5g03711 FvH4_5g03720
malus_domestica	MD06G1096600.v1.1 MD14G1116900.v1.1
prunus_persica	Prupe.5G111400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480301 RchiOBHm_Chr7g0195991 RchiOBHm_Chr7g0196001
rosa_laevigata	RLG00000004076 RLG00000023497
rosa_multiflora	Rmu_sc0000311.1_g000009 Rmu_sc0001640.1_g000015 Rmu_sc0005575.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259960
rosa_rugosa	Rorug07G0028700 Rorug07G0028900
rosa_samantha	Rh3AG233800 Rh3BG266100 Rh3CG263800 Rh7AG155400 Rh7BG157300 Rh7BG157400 Rh7CG160800 Rh7DG156400 Rh7DG156500
rosa_wichuraiana	Rw3G021010 Rw7G013290 Rw7G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	494
AccII	CGCG	1 cut(s)	884
AciI	CCGC	6 cut(s)	389, 554, 600, 603, 648, 847
AclWI	GGATC	4 cut(s)	34, 227, 423, 785
AcoI	YGGCCR	1 cut(s)	672
AcsI	RAATTY	1 cut(s)	21
AfaI	GTAC	2 cut(s)	370, 808
AfiI	CCNNNNNNNGG	3 cut(s)	272, 411, 877
AgsI	TTSAA	6 cut(s)	81, 139, 229, 349, 475, 725
AjiI	CACGTC	1 cut(s)	619
AjnI	CCWGG	3 cut(s)	323, 715, 864
AleI	CACNNNNGTG	2 cut(s)	149, 341
AluBI	AGCT	2 cut(s)	281, 547
AluI	AGCT	2 cut(s)	281, 547
Alw21I	GWGCWC	3 cut(s)	117, 283, 363
Alw26I	GTCTC	4 cut(s)	267, 401, 515, 840
AlwI	GGATC	4 cut(s)	34, 227, 423, 785
AlwNI	CAGNNNCTG	1 cut(s)	665
Ama87I	CYCGRG	1 cut(s)	352
AoxI	GGCC	5 cut(s)	190, 672, 701, 813, 852
ApeKI	GCWGC	3 cut(s)	176, 606, 665
ApoI	RAATTY	1 cut(s)	21
AspA2I	CCTAGG	1 cut(s)	749
AspS9I	GGNCC	5 cut(s)	190, 814, 853, 862, 868
AsuHPI	GGTGA	1 cut(s)	593
AvaI	CYCGRG	1 cut(s)	352
AvaII	GGWCC	2 cut(s)	862, 868
AvrII	CCTAGG	1 cut(s)	749
BalI	TGGCCA	1 cut(s)	674
BanI	GGYRCC	1 cut(s)	494
BanII	GRGCYC	1 cut(s)	283
BarI	GAAGNNNNNNTAC	2 cut(s)	299, 331
BauI	CACGAG	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	217
Bbv12I	GWGCWC	3 cut(s)	117, 283, 363
BbvI	GCAGC	3 cut(s)	188, 593, 652
BccI	CCATC	2 cut(s)	261, 572
BceAI	ACGGC	1 cut(s)	254
BcgI	CGANNNNNNTGC	4 cut(s)	91, 125, 302, 336
BciT130I	CCWGG	3 cut(s)	325, 717, 866
BcoDI	GTCTC	4 cut(s)	267, 401, 515, 840
BfaI	CTAG	6 cut(s)	171, 411, 456, 699, 734, 750
BfmI	CTRYAG	3 cut(s)	666, 705, 840
BglI	GCCNNNNNGGC	1 cut(s)	851
BisI	GCNGC	6 cut(s)	177, 601, 604, 607, 649, 666
BlnI	CCTAGG	1 cut(s)	749
BlsI	GCNGC	6 cut(s)	178, 602, 605, 608, 650, 667
Bme1390I	CCNGG	3 cut(s)	325, 717, 866
Bme18I	GGWCC	2 cut(s)	862, 868
BmeT110I	CYCGRG	1 cut(s)	352
BmgBI	CACGTC	1 cut(s)	619
BmgT120I	GGNCC	5 cut(s)	190, 814, 853, 862, 868
BmiI	GGNNCC	1 cut(s)	496
BmrFI	CCNGG	3 cut(s)	325, 717, 866
BmsI	GCATC	2 cut(s)	576, 642
BpiI	GAAGAC	1 cut(s)	217
BpuEI	CTTGAG	3 cut(s)	267, 563, 842
BsaJI	CCNNGG	4 cut(s)	193, 716, 749, 810
Bsc4I	CCNNNNNNNGG	3 cut(s)	272, 411, 877
Bse1I	ACTGG	1 cut(s)	205
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	3 cut(s)	325, 717, 866
BseDI	CCNNGG	4 cut(s)	193, 716, 749, 810
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	3 cut(s)	272, 411, 877
BseMI	GCAATG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	205
BseXI	GCAGC	3 cut(s)	188, 593, 652
BsgI	GTGCAG	1 cut(s)	678
Bsh1236I	CGCG	1 cut(s)	884
BshFI	GGCC	5 cut(s)	192, 674, 703, 815, 854
BshNI	GGYRCC	1 cut(s)	494
BsiHKAI	GWGCWC	3 cut(s)	117, 283, 363
BsiHKCI	CYCGRG	1 cut(s)	352
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	3 cut(s)	272, 411, 877
BsmAI	GTCTC	4 cut(s)	267, 401, 515, 840
BsmBI	CGTCTC	1 cut(s)	515
BsmFI	GGGAC	1 cut(s)	199
BsmI	GAATGC	1 cut(s)	50
BsnI	GGCC	5 cut(s)	192, 674, 703, 815, 854
BsoBI	CYCGRG	1 cut(s)	352
Bsp1286I	GDGCHC	3 cut(s)	117, 283, 363
Bsp143I	GATC	4 cut(s)	39, 232, 415, 790
Bsp68I	TCGCGA	1 cut(s)	884
BspACI	CCGC	6 cut(s)	389, 554, 600, 603, 648, 847
BspANI	GGCC	5 cut(s)	192, 674, 703, 815, 854
BspFNI	CGCG	1 cut(s)	884
BspLI	GGNNCC	1 cut(s)	496
BspMAI	CTGCAG	1 cut(s)	670
BspPI	GGATC	4 cut(s)	34, 227, 423, 785
BspQI	GCTCTTC	1 cut(s)	271
BspT107I	GGYRCC	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	4 cut(s)	193, 716, 749, 810
BssMI	GATC	4 cut(s)	39, 232, 415, 790
BssSI	CACGAG	1 cut(s)	110
BssT1I	CCWWGG	2 cut(s)	749, 810
Bst2BI	CACGAG	1 cut(s)	110
Bst2UI	CCWGG	3 cut(s)	325, 717, 866
Bst4CI	ACNGT	2 cut(s)	656, 685
Bst6I	CTCTTC	1 cut(s)	271
BstAPI	GCANNNNNTGC	2 cut(s)	665, 782
BstC8I	GCNNGC	3 cut(s)	359, 774, 847
BstF5I	GGATG	1 cut(s)	129
BstFNI	CGCG	1 cut(s)	884
BstKTI	GATC	4 cut(s)	42, 235, 418, 793
BstMAI	GTCTC	4 cut(s)	267, 401, 515, 840
BstMBI	GATC	4 cut(s)	39, 232, 415, 790
BstNI	CCWGG	3 cut(s)	325, 717, 866
BstSCI	CCNGG	3 cut(s)	323, 715, 864
BstSFI	CTRYAG	3 cut(s)	666, 705, 840
BstUI	CGCG	1 cut(s)	884
BstV1I	GCAGC	3 cut(s)	188, 593, 652
BstV2I	GAAGAC	1 cut(s)	217
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	5 cut(s)	192, 674, 703, 815, 854
BtgZI	GCGATG	1 cut(s)	556
BtrI	CACGTC	1 cut(s)	619
BtsCI	GGATG	1 cut(s)	129
BtsI	GCAGTG	3 cut(s)	318, 666, 675
BtsIMutI	CAGTG	5 cut(s)	144, 318, 661, 666, 675
BtuMI	TCGCGA	1 cut(s)	884
Cac8I	GCNNGC	3 cut(s)	359, 774, 847
CaiI	CAGNNNCTG	1 cut(s)	665
Cfr13I	GGNCC	5 cut(s)	190, 814, 853, 862, 868
CseI	GACGC	1 cut(s)	647
CsiI	ACCWGGT	1 cut(s)	864
Csp6I	GTAC	2 cut(s)	369, 807
CspCI	CAANNNNNGTGG	2 cut(s)	577, 612
CviAII	CATG	6 cut(s)	99, 304, 382, 451, 797, 874
CviQI	GTAC	2 cut(s)	369, 807
DpnI	GATC	4 cut(s)	41, 234, 417, 792
DpnII	GATC	4 cut(s)	39, 232, 415, 790
EaeI	YGGCCR	1 cut(s)	672
Eam1104I	CTCTTC	1 cut(s)	271
EarI	CTCTTC	1 cut(s)	271
EciI	GGCGGA	1 cut(s)	404
Ecl136II	GAGCTC	1 cut(s)	281
Eco130I	CCWWGG	2 cut(s)	749, 810
Eco147I	AGGCCT	1 cut(s)	703
Eco24I	GRGCYC	1 cut(s)	283
Eco32I	GATATC	1 cut(s)	757
Eco47I	GGWCC	2 cut(s)	862, 868
Eco53kI	GAGCTC	1 cut(s)	281
Eco88I	CYCGRG	1 cut(s)	352
EcoICRI	GAGCTC	1 cut(s)	281
EcoO109I	RGGNCCY	2 cut(s)	853, 862
EcoRII	CCWGG	3 cut(s)	323, 715, 864
EcoRV	GATATC	1 cut(s)	757
EcoT14I	CCWWGG	2 cut(s)	749, 810
EcoT38I	GRGCYC	1 cut(s)	283
ErhI	CCWWGG	2 cut(s)	749, 810
Esp3I	CGTCTC	1 cut(s)	515
FaeI	CATG	6 cut(s)	102, 307, 385, 454, 800, 877
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	6 cut(s)	98, 303, 381, 450, 796, 873
FauI	CCCGC	2 cut(s)	547, 854
Fnu4HI	GCNGC	6 cut(s)	177, 601, 604, 607, 649, 666
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	283
Fsp4HI	GCNGC	6 cut(s)	177, 601, 604, 607, 649, 666
FspBI	CTAG	6 cut(s)	171, 411, 456, 699, 734, 750
GluI	GCNGC	6 cut(s)	177, 601, 604, 607, 649, 666
HaeIII	GGCC	5 cut(s)	192, 674, 703, 815, 854
HgaI	GACGC	1 cut(s)	647
Hin1II	CATG	6 cut(s)	102, 307, 385, 454, 800, 877
HinfI	GANTC	1 cut(s)	89
HphI	GGTGA	1 cut(s)	593
Hpy166II	GTNNAC	1 cut(s)	371
Hpy188I	TCNGA	2 cut(s)	240, 275
Hpy188III	TCNNGA	3 cut(s)	475, 542, 883
Hpy8I	GTNNAC	1 cut(s)	371
Hpy99I	CGWCG	3 cut(s)	275, 620, 641
HpyAV	CCTTC	2 cut(s)	301, 733
HpyCH4III	ACNGT	2 cut(s)	656, 685
HpyCH4IV	ACGT	2 cut(s)	618, 824
HpyCH4V	TGCA	8 cut(s)	50, 102, 468, 633, 659, 668, 776, 785
HpySE526I	ACGT	2 cut(s)	618, 824
Hsp92II	CATG	6 cut(s)	102, 307, 385, 454, 800, 877
Kzo9I	GATC	4 cut(s)	39, 232, 415, 790
LguI	GCTCTTC	1 cut(s)	271
Lsp1109I	GCAGC	3 cut(s)	188, 593, 652
LweI	GCATC	2 cut(s)	576, 642
MabI	ACCWGGT	1 cut(s)	864
MaeI	CTAG	6 cut(s)	171, 411, 456, 699, 734, 750
MaeII	ACGT	2 cut(s)	618, 824
MaeIII	GTNAC	1 cut(s)	581
MalI	GATC	4 cut(s)	41, 234, 417, 792
MboI	GATC	4 cut(s)	39, 232, 415, 790
MboII	GAAGA	4 cut(s)	217, 248, 288, 439
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	3 cut(s)	117, 283, 363
MlsI	TGGCCA	1 cut(s)	674
MluCI	AATT	1 cut(s)	21
MluNI	TGGCCA	1 cut(s)	674
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	2 cut(s)	253, 409
Mox20I	TGGCCA	1 cut(s)	674
MscI	TGGCCA	1 cut(s)	674
MseI	TTAA	2 cut(s)	549, 898
MslI	CAYNNNNRTG	2 cut(s)	149, 341
Msp20I	TGGCCA	1 cut(s)	674
MspR9I	CCNGG	3 cut(s)	325, 717, 866
Mva1269I	GAATGC	1 cut(s)	50
MvaI	CCWGG	3 cut(s)	325, 717, 866
MvnI	CGCG	1 cut(s)	884
NdeII	GATC	4 cut(s)	39, 232, 415, 790
NlaIII	CATG	6 cut(s)	102, 307, 385, 454, 800, 877
NlaIV	GGNNCC	1 cut(s)	496
NmeAIII	GCCGAG	2 cut(s)	174, 430
NmuCI	GTSAC	1 cut(s)	581
NruI	TCGCGA	1 cut(s)	884
OliI	CACNNNNGTG	2 cut(s)	149, 341
PaeR7I	CTCGAG	1 cut(s)	352
PceI	AGGCCT	1 cut(s)	703
PciSI	GCTCTTC	1 cut(s)	271
PctI	GAATGC	1 cut(s)	50
PflFI	GACNNNGTC	1 cut(s)	866
PkrI	GCNGC	6 cut(s)	178, 602, 605, 608, 650, 667
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PpuMI	RGGWCCY	1 cut(s)	862
Psp124BI	GAGCTC	1 cut(s)	283
Psp5II	RGGWCCY	1 cut(s)	862
Psp6I	CCWGG	3 cut(s)	323, 715, 864
PspGI	CCWGG	3 cut(s)	323, 715, 864
PspN4I	GGNNCC	1 cut(s)	496
PspPI	GGNCC	5 cut(s)	190, 814, 853, 862, 868
PspPPI	RGGWCCY	1 cut(s)	862
PspXI	VCTCGAGB	1 cut(s)	352
PstI	CTGCAG	1 cut(s)	670
PstNI	CAGNNNCTG	1 cut(s)	665
PsuI	RGATCY	1 cut(s)	415
PsyI	GACNNNGTC	1 cut(s)	866
RruI	TCGCGA	1 cut(s)	884
RsaI	GTAC	2 cut(s)	370, 808
RsaNI	GTAC	2 cut(s)	369, 807
RseI	CAYNNNNRTG	2 cut(s)	149, 341
SacI	GAGCTC	1 cut(s)	283
SapI	GCTCTTC	1 cut(s)	271
SaqAI	TTAA	2 cut(s)	549, 898
SatI	GCNGC	6 cut(s)	177, 601, 604, 607, 649, 666
Sau3AI	GATC	4 cut(s)	39, 232, 415, 790
Sau96I	GGNCC	5 cut(s)	190, 814, 853, 862, 868
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	3 cut(s)	325, 717, 866
SduI	GDGCHC	3 cut(s)	117, 283, 363
SetI	ASST	6 cut(s)	283, 549, 562, 621, 827, 867
SexAI	ACCWGGT	1 cut(s)	864
SfaNI	GCATC	2 cut(s)	576, 642
SfcI	CTRYAG	3 cut(s)	666, 705, 840
Sfr274I	CTCGAG	1 cut(s)	352
SinI	GGWCC	2 cut(s)	862, 868
SlaI	CTCGAG	1 cut(s)	352
SmiMI	CAYNNNNRTG	2 cut(s)	149, 341
SmlI	CTYRAG	4 cut(s)	282, 352, 542, 857
SmoI	CTYRAG	4 cut(s)	282, 352, 542, 857
Sse9I	AATT	1 cut(s)	21
SseBI	AGGCCT	1 cut(s)	703
SsiI	CCGC	6 cut(s)	389, 554, 600, 603, 648, 847
SspMI	CTAG	6 cut(s)	171, 411, 456, 699, 734, 750
SstI	GAGCTC	1 cut(s)	283
StuI	AGGCCT	1 cut(s)	703
StyD4I	CCNGG	3 cut(s)	323, 715, 864
StyI	CCWWGG	2 cut(s)	749, 810
TaaI	ACNGT	2 cut(s)	656, 685
TaiI	ACGT	2 cut(s)	621, 827
TaqI	TCGA	3 cut(s)	92, 353, 636
TasI	AATT	1 cut(s)	21
TauI	GCSGC	3 cut(s)	603, 606, 651
Tru1I	TTAA	2 cut(s)	549, 898
Tru9I	TTAA	2 cut(s)	549, 898
TscAI	CASTG	5 cut(s)	151, 325, 661, 666, 675
TseFI	GTSAC	1 cut(s)	581
TseI	GCWGC	3 cut(s)	176, 606, 665
Tsp45I	GTSAC	1 cut(s)	581
TspDTI	ATGAA	4 cut(s)	19, 320, 439, 549
TspRI	CASTG	5 cut(s)	151, 325, 661, 666, 675
Tth111I	GACNNNGTC	1 cut(s)	866
VpaK11BI	GGWCC	2 cut(s)	862, 868
XapI	RAATTY	1 cut(s)	21
XhoI	CTCGAG	1 cut(s)	352
XmaJI	CCTAGG	1 cut(s)	749
XspI	CTAG	6 cut(s)	171, 411, 456, 699, 734, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.