Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004981

Physical Location & Seq

Genomic Coordinates Forward (+)

2021590 .. 2023937

Gene Structure 2348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0028900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTCCTCCGGCACCTGCTCCTCCACCGTCGATCCCGCCGCCGGCGCGGCCAAAGAGTTCATGCTGTTCGGCGTGCGCGTGGTGGTCGACTCCATGAGGAAGAGCGTCAGTCTCAACAATCTCTCGCAGTACGAACACCCTACCGAGGCCTCCAACAACAATAACAGCTCCGGCGCCGGCAAGGACGACGCCGTCGCTGGTTACGTATCTGAGAACGACGTCGTTCACAATTCTGGCGGGAATCGCGAGCGAGAACGCAAGCGAGGAGTTCCGTGGACGGAGGATGAGCACAAGCTATTTCTGGTTGGATTGCAGAAAGTAGGGAAAGGAGATTGGAGAGGGATCTCAAGGAACTATGTCAAGACTCGCACGCCGACTCAGGTGGCCAGCCATGCTCAGAAATACTTTCTCCGCCGGAGCAACCACAATCGCCGCCGCCGCAGATCTAGCCTATTTGATATCACCACTGATTCGGTCCCTGCAATTCCAATTCCAATGGAAGAAGAGCAAGATAACACATCTCACTCGCACTCGTTGCCACCACCTCCACCACAATCCGAATCTTGCAATCCTAACGGATTTTCGATGCTGCCAATTTTTCCAATGAACGTAGGTCCAGCTGTTGTACAAGTCCCCACTAAGAAACCAACAGGAAATCTGACACTGGGACAAGGAAATCCGGGGTGTCCTTCCCCTAAGATCGTCCATCCAGTTGCTCTGCACTCGGCCCCTCATGCTACAGAAGCATCTGATCTAAACTTGAATGCGACAATTGACACATCGCCTCTAGCTCTCAACCTCTCCTTGTCAATGAACTCGAGGGAATCATCGTCAAGGCATTCGGCTTTCCAAGCAATGTCAAGCTTCGGCAATGGGGACAACATCATCAGTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0018130 GO:0018904 GO:0018958 GO:0019438 GO:0019748 GO:0030234 GO:0042349 GO:0042537 GO:0044237 GO:0044249 GO:0044281 GO:0044550 GO:0046189 GO:0046483 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901360 GO:1901362 GO:1901503 GO:1901576 GO:1901598 GO:1901599 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

299

Amino Acids

32.26

Weight (kDa)

8.78

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	90 - 136	5.1e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64160 AT4G23690
fragaria_vesca	FvH4_5g03711 FvH4_5g03720
malus_domestica	MD06G1096600.v1.1 MD14G1116900.v1.1
prunus_persica	Prupe.5G111400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480301 RchiOBHm_Chr7g0195991 RchiOBHm_Chr7g0196001
rosa_laevigata	RLG00000004076 RLG00000023497
rosa_multiflora	Rmu_sc0000311.1_g000009 Rmu_sc0001640.1_g000015 Rmu_sc0005575.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259960
rosa_rugosa	Rorug07G0028700 Rorug07G0028900
rosa_samantha	Rh3AG233800 Rh3BG266100 Rh3CG263800 Rh7AG155400 Rh7BG157300 Rh7BG157400 Rh7CG160800 Rh7DG156400 Rh7DG156500
rosa_wichuraiana	Rw3G021010 Rw7G013290 Rw7G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	23
AasI	GACNNNNNNGTC	1 cut(s)	191
AatII	GACGTC	1 cut(s)	222
Acc36I	ACCTGC	1 cut(s)	23
AccB1I	GGYRCC	2 cut(s)	11, 173
AccI	GTMKAC	1 cut(s)	87
AccII	CGCG	3 cut(s)	47, 78, 246
AciI	CCGC	8 cut(s)	36, 39, 47, 237, 412, 433, 436, 439
AclWI	GGATC	2 cut(s)	26, 350
AcoI	YGGCCR	2 cut(s)	48, 384
AcyI	GRCGYC	3 cut(s)	174, 189, 219
AfaI	GTAC	2 cut(s)	131, 627
AfiI	CCNNNNNNNGG	2 cut(s)	41, 145
AgsI	TTSAA	1 cut(s)	763
AluBI	AGCT	5 cut(s)	168, 295, 620, 791, 864
AluI	AGCT	5 cut(s)	168, 295, 620, 791, 864
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	2 cut(s)	26, 350
Ama87I	CYCGRG	1 cut(s)	817
AoxI	GGCC	4 cut(s)	48, 147, 384, 726
ApeKI	GCWGC	1 cut(s)	589
AspLEI	GCGC	3 cut(s)	47, 78, 176
AspS9I	GGNCC	3 cut(s)	475, 614, 727
AsuC2I	CCSGG	1 cut(s)	681
AsuHPI	GGTGA	1 cut(s)	454
AvaI	CYCGRG	1 cut(s)	817
AvaII	GGWCC	2 cut(s)	475, 614
BalI	TGGCCA	1 cut(s)	386
BanI	GGYRCC	2 cut(s)	11, 173
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	1 cut(s)	576
BccI	CCATC	1 cut(s)	714
BceAI	ACGGC	1 cut(s)	176
BcnI	CCSGG	1 cut(s)	681
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	2 cut(s)	447, 788
BfmI	CTRYAG	1 cut(s)	738
BfoI	RGCGCY	1 cut(s)	177
BfuAI	ACCTGC	1 cut(s)	23
BglI	GCCNNNNNGGC	1 cut(s)	47
BglII	AGATCT	1 cut(s)	443
BisI	GCNGC	6 cut(s)	39, 48, 433, 436, 439, 590
BlsI	GCNGC	6 cut(s)	40, 49, 434, 437, 440, 591
Bme1390I	CCNGG	1 cut(s)	681
Bme18I	GGWCC	2 cut(s)	475, 614
BmeT110I	CYCGRG	1 cut(s)	817
BmgT120I	GGNCC	3 cut(s)	475, 614, 727
BmiI	GGNNCC	4 cut(s)	13, 175, 477, 729
BmrFI	CCNGG	1 cut(s)	681
BmrI	ACTGGG	1 cut(s)	674
BmsI	GCATC	2 cut(s)	576, 755
BmuI	ACTGGG	1 cut(s)	674
BpuEI	CTTGAG	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	681
BsaAI	YACGTR	1 cut(s)	205
BsaHI	GRCGYC	3 cut(s)	174, 189, 219
BsaJI	CCNNGG	3 cut(s)	144, 272, 680
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 145
Bse118I	RCCGGY	2 cut(s)	41, 176
Bse1I	ACTGG	2 cut(s)	669, 710
Bse3DI	GCAATG	2 cut(s)	861, 877
BseDI	CCNNGG	3 cut(s)	144, 272, 680
BseGI	GGATG	2 cut(s)	289, 706
BseLI	CCNNNNNNNGG	2 cut(s)	41, 145
BseMI	GCAATG	2 cut(s)	861, 877
BseMII	CTCAG	3 cut(s)	201, 392, 410
BseNI	ACTGG	2 cut(s)	669, 710
BseRI	GAGGAG	2 cut(s)	10, 279
BseXI	GCAGC	1 cut(s)	576
BsgI	GTGCAG	1 cut(s)	704
Bsh1236I	CGCG	3 cut(s)	47, 78, 246
BshFI	GGCC	4 cut(s)	50, 149, 386, 728
BshNI	GGYRCC	2 cut(s)	11, 173
BsiHKAI	GWGCWC	1 cut(s)	291
BsiHKCI	CYCGRG	1 cut(s)	817
BsiSI	CCGG	6 cut(s)	9, 42, 171, 177, 415, 680
BslFI	GGGAC	4 cut(s)	461, 617, 681, 890
BslI	CCNNNNNNNGG	2 cut(s)	41, 145
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	4 cut(s)	461, 617, 681, 890
BsmI	GAATGC	2 cut(s)	769, 838
BsnI	GGCC	4 cut(s)	50, 149, 386, 728
BsoBI	CYCGRG	1 cut(s)	817
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp1407I	TGTACA	1 cut(s)	625
Bsp143I	GATC	5 cut(s)	31, 342, 443, 699, 751
Bsp68I	TCGCGA	1 cut(s)	246
BspACI	CCGC	8 cut(s)	36, 39, 47, 237, 412, 433, 436, 439
BspANI	GGCC	4 cut(s)	50, 149, 386, 728
BspCNI	CTCAG	3 cut(s)	202, 391, 409
BspFNI	CGCG	3 cut(s)	47, 78, 246
BspLI	GGNNCC	4 cut(s)	13, 175, 477, 729
BspMI	ACCTGC	1 cut(s)	23
BspPI	GGATC	2 cut(s)	26, 350
BspQI	GCTCTTC	2 cut(s)	95, 498
BspT107I	GGYRCC	2 cut(s)	11, 173
BsrDI	GCAATG	2 cut(s)	861, 877
BsrFI	RCCGGY	2 cut(s)	41, 176
BsrGI	TGTACA	1 cut(s)	625
BsrI	ACTGG	2 cut(s)	669, 710
BssAI	RCCGGY	2 cut(s)	41, 176
BssECI	CCNNGG	3 cut(s)	144, 272, 680
BssMI	GATC	5 cut(s)	31, 342, 443, 699, 751
BssNI	GRCGYC	3 cut(s)	174, 189, 219
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	2 cut(s)	95, 498
BstACI	GRCGYC	3 cut(s)	174, 189, 219
BstAPI	GCANNNNNTGC	1 cut(s)	535
BstAUI	TGTACA	1 cut(s)	625
BstBAI	YACGTR	1 cut(s)	205
BstC8I	GCNNGC	7 cut(s)	43, 74, 178, 248, 260, 371, 388
BstDEI	CTNAG	5 cut(s)	210, 378, 396, 639, 696
BstDSI	CCRYGG	1 cut(s)	272
BstF5I	GGATG	2 cut(s)	289, 706
BstFNI	CGCG	3 cut(s)	47, 78, 246
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	3 cut(s)	47, 78, 176
BstKTI	GATC	5 cut(s)	34, 345, 446, 702, 754
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	5 cut(s)	31, 342, 443, 699, 751
BstSCI	CCNGG	1 cut(s)	679
BstSFI	CTRYAG	1 cut(s)	738
BstSNI	TACGTA	1 cut(s)	205
BstUI	CGCG	3 cut(s)	47, 78, 246
BstV1I	GCAGC	1 cut(s)	576
BstX2I	RGATCY	2 cut(s)	342, 443
BstYI	RGATCY	2 cut(s)	342, 443
BsuRI	GGCC	4 cut(s)	50, 149, 386, 728
BtgI	CCRYGG	1 cut(s)	272
BtgZI	GCGATG	1 cut(s)	765
BtsCI	GGATG	2 cut(s)	289, 706
BtsIMutI	CAGTG	3 cut(s)	465, 662, 895
BtuMI	TCGCGA	1 cut(s)	246
BveI	ACCTGC	1 cut(s)	23
Cac8I	GCNNGC	7 cut(s)	43, 74, 178, 248, 260, 371, 388
CfoI	GCGC	3 cut(s)	47, 78, 176
Cfr10I	RCCGGY	2 cut(s)	41, 176
Cfr13I	GGNCC	3 cut(s)	475, 614, 727
CseI	GACGC	2 cut(s)	94, 197
Csp6I	GTAC	2 cut(s)	130, 626
CviAII	CATG	4 cut(s)	61, 94, 392, 734
CviQI	GTAC	2 cut(s)	130, 626
DdeI	CTNAG	5 cut(s)	210, 378, 396, 639, 696
DinI	GGCGCC	1 cut(s)	175
DpnI	GATC	5 cut(s)	33, 344, 445, 701, 753
DpnII	GATC	5 cut(s)	31, 342, 443, 699, 751
DrdI	GACNNNNNNGTC	1 cut(s)	191
DseDI	GACNNNNNNGTC	1 cut(s)	191
EaeI	YGGCCR	2 cut(s)	48, 384
Eam1104I	CTCTTC	2 cut(s)	95, 498
EarI	CTCTTC	2 cut(s)	95, 498
EciI	GGCGGA	1 cut(s)	401
Eco105I	TACGTA	1 cut(s)	205
Eco147I	AGGCCT	1 cut(s)	149
Eco32I	GATATC	1 cut(s)	460
Eco47I	GGWCC	2 cut(s)	475, 614
Eco88I	CYCGRG	1 cut(s)	817
EcoRV	GATATC	1 cut(s)	460
EgeI	GGCGCC	1 cut(s)	175
EheI	GGCGCC	1 cut(s)	175
FaeI	CATG	4 cut(s)	64, 97, 395, 737
FaiI	YATR	5 cut(s)	62, 95, 357, 393, 735
FaqI	GGGAC	4 cut(s)	461, 617, 681, 890
FatI	CATG	4 cut(s)	60, 93, 391, 733
FauI	CCCGC	2 cut(s)	43, 230
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	6 cut(s)	39, 48, 433, 436, 439, 590
FokI	GGATG	2 cut(s)	296, 693
Fsp4HI	GCNGC	6 cut(s)	39, 48, 433, 436, 439, 590
FspBI	CTAG	2 cut(s)	447, 788
GlaI	GCGC	3 cut(s)	46, 77, 175
GluI	GCNGC	6 cut(s)	39, 48, 433, 436, 439, 590
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	4 cut(s)	50, 149, 386, 728
HapII	CCGG	6 cut(s)	9, 42, 171, 177, 415, 680
HgaI	GACGC	2 cut(s)	94, 197
HhaI	GCGC	3 cut(s)	47, 78, 176
Hin1I	GRCGYC	3 cut(s)	174, 189, 219
Hin1II	CATG	4 cut(s)	64, 97, 395, 737
Hin6I	GCGC	3 cut(s)	45, 76, 174
HinP1I	GCGC	3 cut(s)	45, 76, 174
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	862
HinfI	GANTC	7 cut(s)	89, 241, 364, 376, 470, 560, 824
HpaII	CCGG	6 cut(s)	9, 42, 171, 177, 415, 680
HphI	GGTGA	1 cut(s)	454
Hpy166II	GTNNAC	3 cut(s)	88, 226, 276
Hpy188I	TCNGA	5 cut(s)	211, 399, 559, 660, 751
Hpy188III	TCNNGA	2 cut(s)	245, 361
Hpy8I	GTNNAC	3 cut(s)	88, 226, 276
Hpy99I	CGWCG	5 cut(s)	32, 191, 197, 221, 224
HpyAV	CCTTC	1 cut(s)	699
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	3 cut(s)	204, 219, 609
HpyCH4V	TGCA	4 cut(s)	313, 482, 567, 721
HpyF3I	CTNAG	5 cut(s)	210, 378, 396, 639, 696
HpySE526I	ACGT	3 cut(s)	204, 219, 609
Hsp92I	GRCGYC	3 cut(s)	174, 189, 219
Hsp92II	CATG	4 cut(s)	64, 97, 395, 737
HspAI	GCGC	3 cut(s)	45, 76, 174
KasI	GGCGCC	1 cut(s)	173
KroI	GCCGGC	2 cut(s)	41, 176
KroNI	GCCGGC	2 cut(s)	43, 178
Kzo9I	GATC	5 cut(s)	31, 342, 443, 699, 751
LguI	GCTCTTC	2 cut(s)	95, 498
LmnI	GCTCC	3 cut(s)	23, 173, 417
Lsp1109I	GCAGC	1 cut(s)	576
LweI	GCATC	2 cut(s)	576, 755
MaeI	CTAG	2 cut(s)	447, 788
MaeII	ACGT	3 cut(s)	204, 219, 609
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	5 cut(s)	33, 344, 445, 701, 753
MboI	GATC	5 cut(s)	31, 342, 443, 699, 751
MboII	GAAGA	3 cut(s)	112, 512, 515
MfeI	CAATTG	1 cut(s)	771
MflI	RGATCY	2 cut(s)	342, 443
MhlI	GDGCHC	1 cut(s)	291
MlsI	TGGCCA	1 cut(s)	386
MluCI	AATT	5 cut(s)	229, 483, 489, 594, 771
MluNI	TGGCCA	1 cut(s)	386
Mly113I	GGCGCC	1 cut(s)	174
MlyI	GAGTC	3 cut(s)	83, 358, 370
MmeI	TCCRAC	2 cut(s)	177, 286
Mox20I	TGGCCA	1 cut(s)	386
MreI	CGCCGGCG	1 cut(s)	41
MroNI	GCCGGC	2 cut(s)	41, 176
MscI	TGGCCA	1 cut(s)	386
Msp20I	TGGCCA	1 cut(s)	386
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	6 cut(s)	9, 42, 171, 177, 415, 680
MspR9I	CCNGG	1 cut(s)	681
MunI	CAATTG	1 cut(s)	771
Mva1269I	GAATGC	2 cut(s)	769, 838
MvnI	CGCG	3 cut(s)	47, 78, 246
NaeI	GCCGGC	2 cut(s)	43, 178
NarI	GGCGCC	1 cut(s)	174
NciI	CCSGG	1 cut(s)	681
NdeII	GATC	5 cut(s)	31, 342, 443, 699, 751
NgoMIV	GCCGGC	2 cut(s)	41, 176
NlaIII	CATG	4 cut(s)	64, 97, 395, 737
NlaIV	GGNNCC	4 cut(s)	13, 175, 477, 729
NmeAIII	GCCGAG	1 cut(s)	704
NruI	TCGCGA	1 cut(s)	246
PaeR7I	CTCGAG	1 cut(s)	817
PaqCI	CACCTGC	1 cut(s)	23
PceI	AGGCCT	1 cut(s)	149
PciSI	GCTCTTC	2 cut(s)	95, 498
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 201
PctI	GAATGC	2 cut(s)	769, 838
PdiI	GCCGGC	2 cut(s)	43, 178
PfeI	GAWTC	4 cut(s)	241, 470, 560, 824
PflFI	GACNNNGTC	1 cut(s)	191
PkrI	GCNGC	6 cut(s)	40, 49, 434, 437, 440, 591
PleI	GAGTC	3 cut(s)	83, 358, 370
PluTI	GGCGCC	1 cut(s)	177
PpsI	GAGTC	3 cut(s)	83, 358, 370
Ppu21I	YACGTR	1 cut(s)	205
PspN4I	GGNNCC	4 cut(s)	13, 175, 477, 729
PspPI	GGNCC	3 cut(s)	475, 614, 727
PspXI	VCTCGAGB	1 cut(s)	817
PsuI	RGATCY	2 cut(s)	342, 443
PsyI	GACNNNGTC	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	620
RruI	TCGCGA	1 cut(s)	246
RsaI	GTAC	2 cut(s)	131, 627
RsaNI	GTAC	2 cut(s)	130, 626
SalI	GTCGAC	1 cut(s)	86
SapI	GCTCTTC	2 cut(s)	95, 498
SatI	GCNGC	6 cut(s)	39, 48, 433, 436, 439, 590
Sau3AI	GATC	5 cut(s)	31, 342, 443, 699, 751
Sau96I	GGNCC	3 cut(s)	475, 614, 727
SchI	GAGTC	3 cut(s)	83, 358, 370
ScrFI	CCNGG	1 cut(s)	681
SduI	GDGCHC	1 cut(s)	291
SfaNI	GCATC	2 cut(s)	576, 755
SfcI	CTRYAG	1 cut(s)	738
SfoI	GGCGCC	1 cut(s)	175
Sfr274I	CTCGAG	1 cut(s)	817
SgrAI	CRCCGGYG	1 cut(s)	41
SinI	GGWCC	2 cut(s)	475, 614
SlaI	CTCGAG	1 cut(s)	817
SmlI	CTYRAG	2 cut(s)	346, 817
SmoI	CTYRAG	2 cut(s)	346, 817
SnaBI	TACGTA	1 cut(s)	205
Sse9I	AATT	5 cut(s)	229, 483, 489, 594, 771
SseBI	AGGCCT	1 cut(s)	149
SsiI	CCGC	8 cut(s)	36, 39, 47, 237, 412, 433, 436, 439
SspDI	GGCGCC	1 cut(s)	173
SspMI	CTAG	2 cut(s)	447, 788
StuI	AGGCCT	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	679
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	3 cut(s)	207, 222, 612
TaqI	TCGA	4 cut(s)	30, 87, 584, 818
TaqII	GACCGA	1 cut(s)	463
TasI	AATT	5 cut(s)	229, 483, 489, 594, 771
TatI	WGTACW	1 cut(s)	625
TauI	GCSGC	5 cut(s)	41, 50, 435, 438, 441
TfiI	GAWTC	4 cut(s)	241, 470, 560, 824
TscAI	CASTG	3 cut(s)	472, 669, 895
TseI	GCWGC	1 cut(s)	589
TspDTI	ATGAA	3 cut(s)	49, 620, 827
TspGWI	ACGGA	3 cut(s)	261, 293, 591
TspRI	CASTG	3 cut(s)	472, 669, 895
Tth111I	GACNNNGTC	1 cut(s)	191
VpaK11BI	GGWCC	2 cut(s)	475, 614
XhoI	CTCGAG	1 cut(s)	817
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	2 cut(s)	447, 788
ZraI	GACGTC	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.