AT1G64625
BHLH Family

transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
24016643 .. 24019380
2738 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G64625.1

Sequence Viewer

Length: 1584 bp
ATGGGTTCAGAGTATAAGCATATATTGAAGAGTCTCTGTTTAAGCCATGGATGGTCTTATGCTGTGTTTTGGCGTTATGATCCCATCAATTCCATGATATTGAGATTTGAAGAAGCATACAATGATGAACAATCAGTCGCACTAGTTGATGATATGGTTCTCCAGGCTCCTATCTTAGGCCAAGGAATTGTGGGAGAAGTAGCTTCATCCGGAAACCATCAATGGCTGTTCTCAGACACATTGTTTCAGTGGGAACATGAGTTTCAGAATCAGTTTCTCTGTGGCTTTAAGATTCTTATACGGCAGTTTACTTATACACAGACTATCGCAATCATTCCACTAGGATCCAGCGGCGTTGTTCAGCTAGGATCTACTCAAAAGATTCTTGAGAGCACAGAGATATTGGAACAAACAACAAGAGCTCTCCAGGAGACGTGTTTAAAGCCACATGATTCCGGTGATCTCGATACTCTGTTTGAGTCACTGGGAGATTGTGAGATTTTCCCAGCTGAATCTTTTCAAGGATTTAGCTTTGATGACATCTTCGCTGAGGACAATCCTCCTTCTTTGCTCAGCCCTGAGATGATCTCCTCTGAAGCAGCTTCTTCCAACCAAGATCTGACCAATGGAGATGATTATGGGTTCGACATTCTCCAGTCTTACTCTCTGGACGATCTATACCAGCTGCTCGCTGATCCACCAGAACAGAACTGCTCTTCCATGGTGATCCAAGGAGTTGACAAGGATCTTTTCGACATTTTGGGGATGAATTCTCAAACGCCTACAATGGCTTTGCCACCTAAAGGACTCTTCTCAGAGCTCATAAGCAGCAGTCTTAGCAACAACACTTGTAGTAGTTCTCTCACGAACGTGCAAGAGTACTCTGGTGTGAACCAGAGCAAAAGACGGAAGCTTGATACATCATCGGCGCATAGCTCAAGCTTGTTCCCTCAGGAGGAGACAGTAACAAGTCGGAGTTTGTGGATTGATGATGATGAGAGATCAAGTATTGGAGGGAACTGGAAGAAGCCTCACGAAGAAGGTGTGAAGAAGAAAAGAGCAAAGGCAGGAGAAAGCAGGAGGCCGAGGCCTAAGGACCGTCAGATGATACAAGACCGTATCAAGGAGTTGCGAGGGATGATTCCAAATGGAGCTAAGTGTAGCATAGATACGTTGCTGGATCTGACCATAAAACACATGGTGTTCATGCAAAGCCTCGCCAAGTATGCAGAGAGACTCAAACAACCATACGAGTCTAAGCTGGTGAAGGAGAAAGAGAGAACATGGGCGTTGGAAGTGGGGGAAGAAGGAGTGGTATGTCCGATAATGGTGGAGGAATTGAACAGGGAAGGAGAAATGCAGATAGAGATGGTGTGTGAGGAAAGAGAGGAGTTCTTGGAGATAGGACAAGTGGTGAGAGGATTGGGATTGAAGATATTGAAAGGAGTGATGGAAACAAGAAAAGGACAAATATGGGCACACTTCATCGTACAGGCAAAGCCACAAGTCACAAGGATTCAAGTCTTGTACTCACTTGTTCAGCTCTTTCAACACCACACCAAACATGATGATTTATTATCATAG

Protein Analysis

527

Amino Acids

59.58

Weight (kDa)

4.93

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 55 - 138 4.4e-13 bHLH-MYC and R2R3-MYB transcription factors N-terminal
bHLH_LHW PF23176 361 - 420 3.4e-28 Transcription factor LHW bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 209
AciI CCGC 1 cut(s) 351
AclWI GGATC 8 cut(s) 74, 339, 352, 376, 689, 721, 753, 1188
AcsI RAATTY 1 cut(s) 769
AcuI CTGAAG 1 cut(s) 615
AdeI CACNNNGTG 1 cut(s) 1201
AfaI GTAC 3 cut(s) 881, 1491, 1529
AfiI CCNNNNNNNGG 4 cut(s) 176, 803, 955, 1123
AflIII ACRYGT 1 cut(s) 434
AgsI TTSAA 8 cut(s) 28, 110, 521, 1342, 1432, 1441, 1520, 1550
AhlI ACTAGT 1 cut(s) 142
AjiI CACGTC 1 cut(s) 435
AjnI CCWGG 2 cut(s) 162, 426
AleI CACNNNNGTG 1 cut(s) 869
AloI GAACNNNNNNTCC 2 cut(s) 701, 733
Alw21I GWGCWC 3 cut(s) 395, 424, 822
Alw26I GTCTC 4 cut(s) 38, 425, 953, 1228
AlwI GGATC 8 cut(s) 74, 339, 352, 376, 689, 721, 753, 1188
Aor13HI TCCGGA 1 cut(s) 209
AoxI GGCC 3 cut(s) 178, 1082, 1088
ApeKI GCWGC 3 cut(s) 599, 685, 828
ApoI RAATTY 1 cut(s) 769
Asp700I GAANNNNTTC 1 cut(s) 516
AspLEI GCGC 1 cut(s) 931
AspS9I GGNCC 1 cut(s) 1096
AsuHPI GGTGA 4 cut(s) 470, 736, 1276, 1426
AvaII GGWCC 1 cut(s) 1096
AxyI CCTNAGG 2 cut(s) 951, 1092
BaeGI GKGCMC 1 cut(s) 1480
BamHI GGATCC 1 cut(s) 344
BanII GRGCYC 2 cut(s) 424, 822
Bbv12I GWGCWC 3 cut(s) 395, 424, 822
BbvCI CCTCAGC 1 cut(s) 549
BbvI GCAGC 3 cut(s) 611, 672, 840
BccI CCATC 5 cut(s) 45, 92, 225, 1363, 1444
BceAI ACGGC 1 cut(s) 317
BciT130I CCWGG 2 cut(s) 164, 428
BcoDI GTCTC 4 cut(s) 38, 425, 953, 1228
BcuI ACTAGT 1 cut(s) 142
BfaI CTAG 3 cut(s) 143, 341, 365
BglII AGATCT 1 cut(s) 616
BisI GCNGC 4 cut(s) 352, 600, 686, 829
BlpI GCTNAGC 1 cut(s) 572
BlsI GCNGC 4 cut(s) 353, 601, 687, 830
BmcAI AGTACT 1 cut(s) 881
Bme1390I CCNGG 2 cut(s) 164, 428
Bme18I GGWCC 1 cut(s) 1096
BmgBI CACGTC 1 cut(s) 435
BmgT120I GGNCC 1 cut(s) 1096
BmiI GGNNCC 2 cut(s) 168, 346
BmrFI CCNGG 2 cut(s) 164, 428
BmrI ACTGGG 1 cut(s) 494
BmuI ACTGGG 1 cut(s) 494
BplI GAGNNNNNCTC 2 cut(s) 572, 604
BpmI CTGGAG 3 cut(s) 146, 410, 638
Bpu10I CCTNAGC 1 cut(s) 549
Bpu1102I GCTNAGC 1 cut(s) 572
BpuEI CTTGAG 2 cut(s) 407, 922
BsaJI CCNNGG 5 cut(s) 46, 181, 720, 730, 1085
BsaWI WCCGGW 2 cut(s) 209, 455
Bsc4I CCNNNNNNNGG 4 cut(s) 176, 803, 955, 1123
Bse1I ACTGG 3 cut(s) 489, 655, 1025
Bse21I CCTNAGG 2 cut(s) 951, 1092
BseAI TCCGGA 1 cut(s) 209
BseBI CCWGG 2 cut(s) 164, 428
BseDI CCNNGG 5 cut(s) 46, 181, 720, 730, 1085
BseGI GGATG 4 cut(s) 56, 206, 771, 1143
BseLI CCNNNNNNNGG 4 cut(s) 176, 803, 955, 1123
BseMII CTCAG 6 cut(s) 246, 540, 570, 586, 828, 965
BseNI ACTGG 3 cut(s) 489, 655, 1025
BseRI GAGGAG 3 cut(s) 580, 971, 1403
BseSI GKGCMC 1 cut(s) 1480
BseXI GCAGC 3 cut(s) 611, 672, 840
BseYI CCCAGC 1 cut(s) 505
BshFI GGCC 3 cut(s) 180, 1084, 1090
BsiHKAI GWGCWC 3 cut(s) 395, 424, 822
BsiSI CCGG 2 cut(s) 210, 456
BslI CCNNNNNNNGG 4 cut(s) 176, 803, 955, 1123
BsmAI GTCTC 4 cut(s) 38, 425, 953, 1228
BsmBI CGTCTC 1 cut(s) 425
BsnI GGCC 3 cut(s) 180, 1084, 1090
Bsp1286I GDGCHC 4 cut(s) 395, 424, 822, 1480
Bsp13I TCCGGA 1 cut(s) 209
Bsp1720I GCTNAGC 1 cut(s) 572
Bsp19I CCATGG 2 cut(s) 46, 720
BspACI CCGC 1 cut(s) 351
BspANI GGCC 3 cut(s) 180, 1084, 1090
BspCNI CTCAG 6 cut(s) 245, 541, 571, 585, 827, 964
BspEI TCCGGA 1 cut(s) 209
BspLI GGNNCC 2 cut(s) 168, 346
BspPI GGATC 8 cut(s) 74, 339, 352, 376, 689, 721, 753, 1188
BspQI GCTCTTC 1 cut(s) 721
BsrI ACTGG 3 cut(s) 489, 655, 1025
BssECI CCNNGG 5 cut(s) 46, 181, 720, 730, 1085
BssT1I CCWWGG 4 cut(s) 46, 181, 720, 730
Bst2UI CCWGG 2 cut(s) 164, 428
Bst4CI ACNGT 3 cut(s) 964, 1100, 1118
Bst6I CTCTTC 3 cut(s) 23, 721, 815
BstC8I GCNNGC 1 cut(s) 690
BstDSI CCRYGG 2 cut(s) 46, 720
BstENI CCTNNNNNAGG 1 cut(s) 174
BstF5I GGATG 4 cut(s) 56, 206, 771, 1143
BstHHI GCGC 1 cut(s) 931
BstMAI GTCTC 4 cut(s) 38, 425, 953, 1228
BstMWI GCNNNNNNNGC 2 cut(s) 837, 1226
BstNI CCWGG 2 cut(s) 164, 428
BstSCI CCNGG 2 cut(s) 162, 426
BstSLI GKGCMC 1 cut(s) 1480
BstV1I GCAGC 3 cut(s) 611, 672, 840
BstX2I RGATCY 5 cut(s) 344, 368, 616, 745, 1180
BstYI RGATCY 5 cut(s) 344, 368, 616, 745, 1180
Bsu36I CCTNAGG 2 cut(s) 951, 1092
BsuRI GGCC 3 cut(s) 180, 1084, 1090
BtgI CCRYGG 2 cut(s) 46, 720
BtrI CACGTC 1 cut(s) 435
BtsCI GGATG 4 cut(s) 56, 206, 771, 1143
BtsIMutI CAGTG 2 cut(s) 254, 482
Cac8I GCNNGC 1 cut(s) 690
CfoI GCGC 1 cut(s) 931
Cfr13I GGNCC 1 cut(s) 1096
Csp6I GTAC 3 cut(s) 880, 1490, 1528
CviAII CATG 9 cut(s) 47, 94, 257, 449, 721, 1198, 1207, 1284, 1565
CviQI GTAC 3 cut(s) 880, 1490, 1528
DraI TTTAAA 1 cut(s) 441
DraIII CACNNNGTG 1 cut(s) 1201
Eam1104I CTCTTC 3 cut(s) 23, 721, 815
EarI CTCTTC 3 cut(s) 23, 721, 815
Ecl136II GAGCTC 2 cut(s) 422, 820
Eco130I CCWWGG 4 cut(s) 46, 181, 720, 730
Eco147I AGGCCT 1 cut(s) 1090
Eco24I GRGCYC 2 cut(s) 424, 822
Eco47I GGWCC 1 cut(s) 1096
Eco53kI GAGCTC 2 cut(s) 422, 820
Eco57I CTGAAG 1 cut(s) 615
Eco81I CCTNAGG 2 cut(s) 951, 1092
EcoICRI GAGCTC 2 cut(s) 422, 820
EcoNI CCTNNNNNAGG 1 cut(s) 174
EcoRI GAATTC 1 cut(s) 769
EcoRII CCWGG 2 cut(s) 162, 426
EcoT14I CCWWGG 4 cut(s) 46, 181, 720, 730
EcoT38I GRGCYC 2 cut(s) 424, 822
ErhI CCWWGG 4 cut(s) 46, 181, 720, 730
Esp3I CGTCTC 1 cut(s) 425
FaeI CATG 9 cut(s) 50, 97, 260, 452, 724, 1201, 1210, 1287, 1568
FatI CATG 9 cut(s) 46, 93, 256, 448, 720, 1197, 1206, 1283, 1564
Fnu4HI GCNGC 4 cut(s) 352, 600, 686, 829
FokI GGATG 4 cut(s) 63, 193, 778, 1150
FriOI GRGCYC 2 cut(s) 424, 822
Fsp4HI GCNGC 4 cut(s) 352, 600, 686, 829
FspBI CTAG 3 cut(s) 143, 341, 365
GlaI GCGC 1 cut(s) 930
GluI GCNGC 4 cut(s) 352, 600, 686, 829
GsaI CCCAGC 1 cut(s) 509
GsuI CTGGAG 3 cut(s) 146, 410, 638
HaeIII GGCC 3 cut(s) 180, 1084, 1090
HapII CCGG 2 cut(s) 210, 456
HhaI GCGC 1 cut(s) 931
Hin1II CATG 9 cut(s) 50, 97, 260, 452, 724, 1201, 1210, 1287, 1568
Hin6I GCGC 1 cut(s) 929
HinP1I GCGC 1 cut(s) 929
HincII GTYRAC 1 cut(s) 739
HindII GTYRAC 1 cut(s) 739
HindIII AAGCTT 2 cut(s) 911, 940
HpaII CCGG 2 cut(s) 210, 456
HphI GGTGA 4 cut(s) 470, 736, 1276, 1426
Hpy166II GTNNAC 3 cut(s) 309, 739, 892
Hpy188III TCNNGA 7 cut(s) 210, 386, 464, 668, 865, 953, 1034
Hpy8I GTNNAC 3 cut(s) 309, 739, 892
HpyAV CCTTC 5 cut(s) 573, 1034, 1261, 1301, 1343
HpyCH4III ACNGT 3 cut(s) 964, 1100, 1118
HpyCH4IV ACGT 3 cut(s) 434, 870, 1172
HpyCH4V TGCA 4 cut(s) 874, 1210, 1229, 1360
HpyF10VI GCNNNNNNNGC 2 cut(s) 837, 1226
HpySE526I ACGT 3 cut(s) 434, 870, 1172
Hsp92II CATG 9 cut(s) 50, 97, 260, 452, 724, 1201, 1210, 1287, 1568
HspAI GCGC 1 cut(s) 929
Kpn2I TCCGGA 1 cut(s) 209
LguI GCTCTTC 1 cut(s) 721
LmnI GCTCC 2 cut(s) 172, 1151
Lsp1109I GCAGC 3 cut(s) 611, 672, 840
MaeI CTAG 3 cut(s) 143, 341, 365
MaeII ACGT 3 cut(s) 434, 870, 1172
MaeIII GTNAC 3 cut(s) 480, 964, 1507
MflI RGATCY 5 cut(s) 344, 368, 616, 745, 1180
MhlI GDGCHC 4 cut(s) 395, 424, 822, 1480
MluCI AATT 4 cut(s) 88, 186, 769, 1337
MlyI GAGTC 5 cut(s) 40, 488, 801, 1230, 1262
MmeI TCCRAC 3 cut(s) 633, 953, 1272
MroI TCCGGA 1 cut(s) 209
MroXI GAANNNNTTC 1 cut(s) 516
MseI TTAA 3 cut(s) 41, 288, 440
MslI CAYNNNNRTG 1 cut(s) 869
MspA1I CMGCKG 3 cut(s) 351, 509, 685
MspI CCGG 2 cut(s) 210, 456
MspR9I CCNGG 2 cut(s) 164, 428
MvaI CCWGG 2 cut(s) 164, 428
MwoI GCNNNNNNNGC 2 cut(s) 837, 1226
NcoI CCATGG 2 cut(s) 46, 720
NlaIII CATG 9 cut(s) 50, 97, 260, 452, 724, 1201, 1210, 1287, 1568
NlaIV GGNNCC 2 cut(s) 168, 346
NmeAIII GCCGAG 1 cut(s) 1110
NmuCI GTSAC 2 cut(s) 480, 1507
OliI CACNNNNGTG 1 cut(s) 869
PceI AGGCCT 1 cut(s) 1090
PciSI GCTCTTC 1 cut(s) 721
PdmI GAANNNNTTC 1 cut(s) 516
PfeI GAWTC 7 cut(s) 268, 292, 382, 452, 512, 1141, 1516
PfoI TCCNGGA 1 cut(s) 426
PkrI GCNGC 4 cut(s) 353, 601, 687, 830
PleI GAGTC 5 cut(s) 39, 487, 801, 1230, 1261
PpsI GAGTC 5 cut(s) 39, 487, 801, 1230, 1261
Psp124BI GAGCTC 2 cut(s) 424, 822
Psp6I CCWGG 2 cut(s) 162, 426
PspFI CCCAGC 1 cut(s) 505
PspGI CCWGG 2 cut(s) 162, 426
PspN4I GGNNCC 2 cut(s) 168, 346
PspPI GGNCC 1 cut(s) 1096
PsuI RGATCY 5 cut(s) 344, 368, 616, 745, 1180
PvuII CAGCTG 2 cut(s) 509, 685
RsaI GTAC 3 cut(s) 881, 1491, 1529
RsaNI GTAC 3 cut(s) 880, 1490, 1528
RseI CAYNNNNRTG 1 cut(s) 869
SacI GAGCTC 2 cut(s) 424, 822
SapI GCTCTTC 1 cut(s) 721
SaqAI TTAA 3 cut(s) 41, 288, 440
SatI GCNGC 4 cut(s) 352, 600, 686, 829
Sau96I GGNCC 1 cut(s) 1096
ScaI AGTACT 1 cut(s) 881
SchI GAGTC 5 cut(s) 40, 488, 801, 1230, 1262
ScrFI CCNGG 2 cut(s) 164, 428
SduI GDGCHC 4 cut(s) 395, 424, 822, 1480
SinI GGWCC 1 cut(s) 1096
SmiMI CAYNNNNRTG 1 cut(s) 869
SmlI CTYRAG 2 cut(s) 386, 937
SmoI CTYRAG 2 cut(s) 386, 937
SpeI ACTAGT 1 cut(s) 142
Sse9I AATT 4 cut(s) 88, 186, 769, 1337
SseBI AGGCCT 1 cut(s) 1090
SsiI CCGC 1 cut(s) 351
SspMI CTAG 3 cut(s) 143, 341, 365
SstI GAGCTC 2 cut(s) 424, 822
StuI AGGCCT 1 cut(s) 1090
StyD4I CCNGG 2 cut(s) 162, 426
StyI CCWWGG 4 cut(s) 46, 181, 720, 730
TaaI ACNGT 3 cut(s) 964, 1100, 1118
TaiI ACGT 3 cut(s) 437, 873, 1175
TaqI TCGA 3 cut(s) 465, 645, 753
TasI AATT 4 cut(s) 88, 186, 769, 1337
TatI WGTACW 2 cut(s) 879, 1527
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 7 cut(s) 268, 292, 382, 452, 512, 1141, 1516
Tru1I TTAA 3 cut(s) 41, 288, 440
Tru9I TTAA 3 cut(s) 41, 288, 440
TscAI CASTG 2 cut(s) 254, 489
TseFI GTSAC 2 cut(s) 480, 1507
TseI GCWGC 3 cut(s) 599, 685, 828
Tsp45I GTSAC 2 cut(s) 480, 1507
TspDTI ATGAA 5 cut(s) 141, 195, 782, 1195, 1474
TspGWI ACGGA 1 cut(s) 922
TspRI CASTG 2 cut(s) 254, 489
VpaK11BI GGWCC 1 cut(s) 1096
XagI CCTNNNNNAGG 1 cut(s) 174
XapI RAATTY 1 cut(s) 769
XcmI CCANNNNNNNNNTGG 1 cut(s) 1195
XmnI GAANNNNTTC 1 cut(s) 516
XspI CTAG 3 cut(s) 143, 341, 365
ZrmI AGTACT 1 cut(s) 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.