transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G64625 AT1G64625 AT1G64625 AT1G64625 AT5G24352 AT5G24352 |
| fragaria_vesca | FvH4_4g16070 FvH4_4g16070 FvH4_4g16070 FvH4_5g11300 FvH4_5g11300 FvH4_5g11300 FvH4_5g11300 FvH4_5g11300 |
| malus_domestica | MD06G1114400.v1.1 MD14G1135600.v1.1 |
| prunus_persica | Prupe.5G127100_v2.0.a1 |
| pyrus_communis | pycom06g10710 pycom14g10880 pycom14g10890 |
| rosa_chinensis | RchiOBHm_Chr7g0186541 |
| rosa_laevigata | RLG00000004836 |
| rosa_multiflora | Rmu_sc0000645.1_g000021 |
| rosa_roxburghii | Rroxscaffold_3G00268060 |
| rosa_rugosa | Rorug06G0475000 Rorug06G0475000 |
| rosa_samantha | Rh7AG066100 Rh7BG082000 Rh7CG081700 Rh7DG082700 |
| rosa_wichuraiana | Rw7G006870 Rw7G007090 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 209 |
| AciI | CCGC | 1 cut(s) | 351 |
| AclWI | GGATC | 8 cut(s) | 74, 339, 352, 376, 689, 721, 753, 1188 |
| AcsI | RAATTY | 1 cut(s) | 769 |
| AcuI | CTGAAG | 1 cut(s) | 615 |
| AdeI | CACNNNGTG | 1 cut(s) | 1201 |
| AfaI | GTAC | 3 cut(s) | 881, 1491, 1529 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 176, 803, 955, 1123 |
| AflIII | ACRYGT | 1 cut(s) | 434 |
| AgsI | TTSAA | 8 cut(s) | 28, 110, 521, 1342, 1432, 1441, 1520, 1550 |
| AhlI | ACTAGT | 1 cut(s) | 142 |
| AjiI | CACGTC | 1 cut(s) | 435 |
| AjnI | CCWGG | 2 cut(s) | 162, 426 |
| AleI | CACNNNNGTG | 1 cut(s) | 869 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 701, 733 |
| Alw21I | GWGCWC | 3 cut(s) | 395, 424, 822 |
| Alw26I | GTCTC | 4 cut(s) | 38, 425, 953, 1228 |
| AlwI | GGATC | 8 cut(s) | 74, 339, 352, 376, 689, 721, 753, 1188 |
| Aor13HI | TCCGGA | 1 cut(s) | 209 |
| AoxI | GGCC | 3 cut(s) | 178, 1082, 1088 |
| ApeKI | GCWGC | 3 cut(s) | 599, 685, 828 |
| ApoI | RAATTY | 1 cut(s) | 769 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 516 |
| AspLEI | GCGC | 1 cut(s) | 931 |
| AspS9I | GGNCC | 1 cut(s) | 1096 |
| AsuHPI | GGTGA | 4 cut(s) | 470, 736, 1276, 1426 |
| AvaII | GGWCC | 1 cut(s) | 1096 |
| AxyI | CCTNAGG | 2 cut(s) | 951, 1092 |
| BaeGI | GKGCMC | 1 cut(s) | 1480 |
| BamHI | GGATCC | 1 cut(s) | 344 |
| BanII | GRGCYC | 2 cut(s) | 424, 822 |
| Bbv12I | GWGCWC | 3 cut(s) | 395, 424, 822 |
| BbvCI | CCTCAGC | 1 cut(s) | 549 |
| BbvI | GCAGC | 3 cut(s) | 611, 672, 840 |
| BccI | CCATC | 5 cut(s) | 45, 92, 225, 1363, 1444 |
| BceAI | ACGGC | 1 cut(s) | 317 |
| BciT130I | CCWGG | 2 cut(s) | 164, 428 |
| BcoDI | GTCTC | 4 cut(s) | 38, 425, 953, 1228 |
| BcuI | ACTAGT | 1 cut(s) | 142 |
| BfaI | CTAG | 3 cut(s) | 143, 341, 365 |
| BglII | AGATCT | 1 cut(s) | 616 |
| BisI | GCNGC | 4 cut(s) | 352, 600, 686, 829 |
| BlpI | GCTNAGC | 1 cut(s) | 572 |
| BlsI | GCNGC | 4 cut(s) | 353, 601, 687, 830 |
| BmcAI | AGTACT | 1 cut(s) | 881 |
| Bme1390I | CCNGG | 2 cut(s) | 164, 428 |
| Bme18I | GGWCC | 1 cut(s) | 1096 |
| BmgBI | CACGTC | 1 cut(s) | 435 |
| BmgT120I | GGNCC | 1 cut(s) | 1096 |
| BmiI | GGNNCC | 2 cut(s) | 168, 346 |
| BmrFI | CCNGG | 2 cut(s) | 164, 428 |
| BmrI | ACTGGG | 1 cut(s) | 494 |
| BmuI | ACTGGG | 1 cut(s) | 494 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 572, 604 |
| BpmI | CTGGAG | 3 cut(s) | 146, 410, 638 |
| Bpu10I | CCTNAGC | 1 cut(s) | 549 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 572 |
| BpuEI | CTTGAG | 2 cut(s) | 407, 922 |
| BsaJI | CCNNGG | 5 cut(s) | 46, 181, 720, 730, 1085 |
| BsaWI | WCCGGW | 2 cut(s) | 209, 455 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 176, 803, 955, 1123 |
| Bse1I | ACTGG | 3 cut(s) | 489, 655, 1025 |
| Bse21I | CCTNAGG | 2 cut(s) | 951, 1092 |
| BseAI | TCCGGA | 1 cut(s) | 209 |
| BseBI | CCWGG | 2 cut(s) | 164, 428 |
| BseDI | CCNNGG | 5 cut(s) | 46, 181, 720, 730, 1085 |
| BseGI | GGATG | 4 cut(s) | 56, 206, 771, 1143 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 176, 803, 955, 1123 |
| BseMII | CTCAG | 6 cut(s) | 246, 540, 570, 586, 828, 965 |
| BseNI | ACTGG | 3 cut(s) | 489, 655, 1025 |
| BseRI | GAGGAG | 3 cut(s) | 580, 971, 1403 |
| BseSI | GKGCMC | 1 cut(s) | 1480 |
| BseXI | GCAGC | 3 cut(s) | 611, 672, 840 |
| BseYI | CCCAGC | 1 cut(s) | 505 |
| BshFI | GGCC | 3 cut(s) | 180, 1084, 1090 |
| BsiHKAI | GWGCWC | 3 cut(s) | 395, 424, 822 |
| BsiSI | CCGG | 2 cut(s) | 210, 456 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 176, 803, 955, 1123 |
| BsmAI | GTCTC | 4 cut(s) | 38, 425, 953, 1228 |
| BsmBI | CGTCTC | 1 cut(s) | 425 |
| BsnI | GGCC | 3 cut(s) | 180, 1084, 1090 |
| Bsp1286I | GDGCHC | 4 cut(s) | 395, 424, 822, 1480 |
| Bsp13I | TCCGGA | 1 cut(s) | 209 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 572 |
| Bsp19I | CCATGG | 2 cut(s) | 46, 720 |
| BspACI | CCGC | 1 cut(s) | 351 |
| BspANI | GGCC | 3 cut(s) | 180, 1084, 1090 |
| BspCNI | CTCAG | 6 cut(s) | 245, 541, 571, 585, 827, 964 |
| BspEI | TCCGGA | 1 cut(s) | 209 |
| BspLI | GGNNCC | 2 cut(s) | 168, 346 |
| BspPI | GGATC | 8 cut(s) | 74, 339, 352, 376, 689, 721, 753, 1188 |
| BspQI | GCTCTTC | 1 cut(s) | 721 |
| BsrI | ACTGG | 3 cut(s) | 489, 655, 1025 |
| BssECI | CCNNGG | 5 cut(s) | 46, 181, 720, 730, 1085 |
| BssT1I | CCWWGG | 4 cut(s) | 46, 181, 720, 730 |
| Bst2UI | CCWGG | 2 cut(s) | 164, 428 |
| Bst4CI | ACNGT | 3 cut(s) | 964, 1100, 1118 |
| Bst6I | CTCTTC | 3 cut(s) | 23, 721, 815 |
| BstC8I | GCNNGC | 1 cut(s) | 690 |
| BstDSI | CCRYGG | 2 cut(s) | 46, 720 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 174 |
| BstF5I | GGATG | 4 cut(s) | 56, 206, 771, 1143 |
| BstHHI | GCGC | 1 cut(s) | 931 |
| BstMAI | GTCTC | 4 cut(s) | 38, 425, 953, 1228 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 837, 1226 |
| BstNI | CCWGG | 2 cut(s) | 164, 428 |
| BstSCI | CCNGG | 2 cut(s) | 162, 426 |
| BstSLI | GKGCMC | 1 cut(s) | 1480 |
| BstV1I | GCAGC | 3 cut(s) | 611, 672, 840 |
| BstX2I | RGATCY | 5 cut(s) | 344, 368, 616, 745, 1180 |
| BstYI | RGATCY | 5 cut(s) | 344, 368, 616, 745, 1180 |
| Bsu36I | CCTNAGG | 2 cut(s) | 951, 1092 |
| BsuRI | GGCC | 3 cut(s) | 180, 1084, 1090 |
| BtgI | CCRYGG | 2 cut(s) | 46, 720 |
| BtrI | CACGTC | 1 cut(s) | 435 |
| BtsCI | GGATG | 4 cut(s) | 56, 206, 771, 1143 |
| BtsIMutI | CAGTG | 2 cut(s) | 254, 482 |
| Cac8I | GCNNGC | 1 cut(s) | 690 |
| CfoI | GCGC | 1 cut(s) | 931 |
| Cfr13I | GGNCC | 1 cut(s) | 1096 |
| Csp6I | GTAC | 3 cut(s) | 880, 1490, 1528 |
| CviAII | CATG | 9 cut(s) | 47, 94, 257, 449, 721, 1198, 1207, 1284, 1565 |
| CviQI | GTAC | 3 cut(s) | 880, 1490, 1528 |
| DraI | TTTAAA | 1 cut(s) | 441 |
| DraIII | CACNNNGTG | 1 cut(s) | 1201 |
| Eam1104I | CTCTTC | 3 cut(s) | 23, 721, 815 |
| EarI | CTCTTC | 3 cut(s) | 23, 721, 815 |
| Ecl136II | GAGCTC | 2 cut(s) | 422, 820 |
| Eco130I | CCWWGG | 4 cut(s) | 46, 181, 720, 730 |
| Eco147I | AGGCCT | 1 cut(s) | 1090 |
| Eco24I | GRGCYC | 2 cut(s) | 424, 822 |
| Eco47I | GGWCC | 1 cut(s) | 1096 |
| Eco53kI | GAGCTC | 2 cut(s) | 422, 820 |
| Eco57I | CTGAAG | 1 cut(s) | 615 |
| Eco81I | CCTNAGG | 2 cut(s) | 951, 1092 |
| EcoICRI | GAGCTC | 2 cut(s) | 422, 820 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 174 |
| EcoRI | GAATTC | 1 cut(s) | 769 |
| EcoRII | CCWGG | 2 cut(s) | 162, 426 |
| EcoT14I | CCWWGG | 4 cut(s) | 46, 181, 720, 730 |
| EcoT38I | GRGCYC | 2 cut(s) | 424, 822 |
| ErhI | CCWWGG | 4 cut(s) | 46, 181, 720, 730 |
| Esp3I | CGTCTC | 1 cut(s) | 425 |
| FaeI | CATG | 9 cut(s) | 50, 97, 260, 452, 724, 1201, 1210, 1287, 1568 |
| FatI | CATG | 9 cut(s) | 46, 93, 256, 448, 720, 1197, 1206, 1283, 1564 |
| Fnu4HI | GCNGC | 4 cut(s) | 352, 600, 686, 829 |
| FokI | GGATG | 4 cut(s) | 63, 193, 778, 1150 |
| FriOI | GRGCYC | 2 cut(s) | 424, 822 |
| Fsp4HI | GCNGC | 4 cut(s) | 352, 600, 686, 829 |
| FspBI | CTAG | 3 cut(s) | 143, 341, 365 |
| GlaI | GCGC | 1 cut(s) | 930 |
| GluI | GCNGC | 4 cut(s) | 352, 600, 686, 829 |
| GsaI | CCCAGC | 1 cut(s) | 509 |
| GsuI | CTGGAG | 3 cut(s) | 146, 410, 638 |
| HaeIII | GGCC | 3 cut(s) | 180, 1084, 1090 |
| HapII | CCGG | 2 cut(s) | 210, 456 |
| HhaI | GCGC | 1 cut(s) | 931 |
| Hin1II | CATG | 9 cut(s) | 50, 97, 260, 452, 724, 1201, 1210, 1287, 1568 |
| Hin6I | GCGC | 1 cut(s) | 929 |
| HinP1I | GCGC | 1 cut(s) | 929 |
| HincII | GTYRAC | 1 cut(s) | 739 |
| HindII | GTYRAC | 1 cut(s) | 739 |
| HindIII | AAGCTT | 2 cut(s) | 911, 940 |
| HpaII | CCGG | 2 cut(s) | 210, 456 |
| HphI | GGTGA | 4 cut(s) | 470, 736, 1276, 1426 |
| Hpy166II | GTNNAC | 3 cut(s) | 309, 739, 892 |
| Hpy188III | TCNNGA | 7 cut(s) | 210, 386, 464, 668, 865, 953, 1034 |
| Hpy8I | GTNNAC | 3 cut(s) | 309, 739, 892 |
| HpyAV | CCTTC | 5 cut(s) | 573, 1034, 1261, 1301, 1343 |
| HpyCH4III | ACNGT | 3 cut(s) | 964, 1100, 1118 |
| HpyCH4IV | ACGT | 3 cut(s) | 434, 870, 1172 |
| HpyCH4V | TGCA | 4 cut(s) | 874, 1210, 1229, 1360 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 837, 1226 |
| HpySE526I | ACGT | 3 cut(s) | 434, 870, 1172 |
| Hsp92II | CATG | 9 cut(s) | 50, 97, 260, 452, 724, 1201, 1210, 1287, 1568 |
| HspAI | GCGC | 1 cut(s) | 929 |
| Kpn2I | TCCGGA | 1 cut(s) | 209 |
| LguI | GCTCTTC | 1 cut(s) | 721 |
| LmnI | GCTCC | 2 cut(s) | 172, 1151 |
| Lsp1109I | GCAGC | 3 cut(s) | 611, 672, 840 |
| MaeI | CTAG | 3 cut(s) | 143, 341, 365 |
| MaeII | ACGT | 3 cut(s) | 434, 870, 1172 |
| MaeIII | GTNAC | 3 cut(s) | 480, 964, 1507 |
| MflI | RGATCY | 5 cut(s) | 344, 368, 616, 745, 1180 |
| MhlI | GDGCHC | 4 cut(s) | 395, 424, 822, 1480 |
| MluCI | AATT | 4 cut(s) | 88, 186, 769, 1337 |
| MlyI | GAGTC | 5 cut(s) | 40, 488, 801, 1230, 1262 |
| MmeI | TCCRAC | 3 cut(s) | 633, 953, 1272 |
| MroI | TCCGGA | 1 cut(s) | 209 |
| MroXI | GAANNNNTTC | 1 cut(s) | 516 |
| MseI | TTAA | 3 cut(s) | 41, 288, 440 |
| MslI | CAYNNNNRTG | 1 cut(s) | 869 |
| MspA1I | CMGCKG | 3 cut(s) | 351, 509, 685 |
| MspI | CCGG | 2 cut(s) | 210, 456 |
| MspR9I | CCNGG | 2 cut(s) | 164, 428 |
| MvaI | CCWGG | 2 cut(s) | 164, 428 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 837, 1226 |
| NcoI | CCATGG | 2 cut(s) | 46, 720 |
| NlaIII | CATG | 9 cut(s) | 50, 97, 260, 452, 724, 1201, 1210, 1287, 1568 |
| NlaIV | GGNNCC | 2 cut(s) | 168, 346 |
| NmeAIII | GCCGAG | 1 cut(s) | 1110 |
| NmuCI | GTSAC | 2 cut(s) | 480, 1507 |
| OliI | CACNNNNGTG | 1 cut(s) | 869 |
| PceI | AGGCCT | 1 cut(s) | 1090 |
| PciSI | GCTCTTC | 1 cut(s) | 721 |
| PdmI | GAANNNNTTC | 1 cut(s) | 516 |
| PfeI | GAWTC | 7 cut(s) | 268, 292, 382, 452, 512, 1141, 1516 |
| PfoI | TCCNGGA | 1 cut(s) | 426 |
| PkrI | GCNGC | 4 cut(s) | 353, 601, 687, 830 |
| PleI | GAGTC | 5 cut(s) | 39, 487, 801, 1230, 1261 |
| PpsI | GAGTC | 5 cut(s) | 39, 487, 801, 1230, 1261 |
| Psp124BI | GAGCTC | 2 cut(s) | 424, 822 |
| Psp6I | CCWGG | 2 cut(s) | 162, 426 |
| PspFI | CCCAGC | 1 cut(s) | 505 |
| PspGI | CCWGG | 2 cut(s) | 162, 426 |
| PspN4I | GGNNCC | 2 cut(s) | 168, 346 |
| PspPI | GGNCC | 1 cut(s) | 1096 |
| PsuI | RGATCY | 5 cut(s) | 344, 368, 616, 745, 1180 |
| PvuII | CAGCTG | 2 cut(s) | 509, 685 |
| RsaI | GTAC | 3 cut(s) | 881, 1491, 1529 |
| RsaNI | GTAC | 3 cut(s) | 880, 1490, 1528 |
| RseI | CAYNNNNRTG | 1 cut(s) | 869 |
| SacI | GAGCTC | 2 cut(s) | 424, 822 |
| SapI | GCTCTTC | 1 cut(s) | 721 |
| SaqAI | TTAA | 3 cut(s) | 41, 288, 440 |
| SatI | GCNGC | 4 cut(s) | 352, 600, 686, 829 |
| Sau96I | GGNCC | 1 cut(s) | 1096 |
| ScaI | AGTACT | 1 cut(s) | 881 |
| SchI | GAGTC | 5 cut(s) | 40, 488, 801, 1230, 1262 |
| ScrFI | CCNGG | 2 cut(s) | 164, 428 |
| SduI | GDGCHC | 4 cut(s) | 395, 424, 822, 1480 |
| SinI | GGWCC | 1 cut(s) | 1096 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 869 |
| SmlI | CTYRAG | 2 cut(s) | 386, 937 |
| SmoI | CTYRAG | 2 cut(s) | 386, 937 |
| SpeI | ACTAGT | 1 cut(s) | 142 |
| Sse9I | AATT | 4 cut(s) | 88, 186, 769, 1337 |
| SseBI | AGGCCT | 1 cut(s) | 1090 |
| SsiI | CCGC | 1 cut(s) | 351 |
| SspMI | CTAG | 3 cut(s) | 143, 341, 365 |
| SstI | GAGCTC | 2 cut(s) | 424, 822 |
| StuI | AGGCCT | 1 cut(s) | 1090 |
| StyD4I | CCNGG | 2 cut(s) | 162, 426 |
| StyI | CCWWGG | 4 cut(s) | 46, 181, 720, 730 |
| TaaI | ACNGT | 3 cut(s) | 964, 1100, 1118 |
| TaiI | ACGT | 3 cut(s) | 437, 873, 1175 |
| TaqI | TCGA | 3 cut(s) | 465, 645, 753 |
| TasI | AATT | 4 cut(s) | 88, 186, 769, 1337 |
| TatI | WGTACW | 2 cut(s) | 879, 1527 |
| TauI | GCSGC | 1 cut(s) | 354 |
| TfiI | GAWTC | 7 cut(s) | 268, 292, 382, 452, 512, 1141, 1516 |
| Tru1I | TTAA | 3 cut(s) | 41, 288, 440 |
| Tru9I | TTAA | 3 cut(s) | 41, 288, 440 |
| TscAI | CASTG | 2 cut(s) | 254, 489 |
| TseFI | GTSAC | 2 cut(s) | 480, 1507 |
| TseI | GCWGC | 3 cut(s) | 599, 685, 828 |
| Tsp45I | GTSAC | 2 cut(s) | 480, 1507 |
| TspDTI | ATGAA | 5 cut(s) | 141, 195, 782, 1195, 1474 |
| TspGWI | ACGGA | 1 cut(s) | 922 |
| TspRI | CASTG | 2 cut(s) | 254, 489 |
| VpaK11BI | GGWCC | 1 cut(s) | 1096 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 174 |
| XapI | RAATTY | 1 cut(s) | 769 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1195 |
| XmnI | GAANNNNTTC | 1 cut(s) | 516 |
| XspI | CTAG | 3 cut(s) | 143, 341, 365 |
| ZrmI | AGTACT | 1 cut(s) | 881 |