Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004477

Physical Location & Seq

Genomic Coordinates Forward (+)

8310940 .. 8311985

Gene Structure 1046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G24352.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGACTCTACAGGCTCCTTTCTTAGGCCAAGGAATTGTGGGAGAAGTAGCTTCAACCGGAAACCATCAATGGCTGTTCTCAGACACATTGTTTCAGAATCAGTTTCTCTCTGGCTTCAAGACTATCGCAATCATTCCACTAGGATCCAGCGGCGTTGTTCAACTAGGATCTACTCAAAAGATTCTTGAGAGCACAAAGATATTGGAACAAACAACAAGAGCTCTCCAGGAGACTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0003674 GO:0003700 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007140 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010154 GO:0010468 GO:0010556 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048232 GO:0048285 GO:0048316 GO:0048364 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051321 GO:0051704 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0090058 GO:0099402 GO:0140013 GO:0140096 GO:0140110 GO:1901564 GO:1903046 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bHLH-MYC_N

Protein Analysis

79

Amino Acids

8.53

Weight (kDa)

5.57

Isoelectric Point (pI)

23.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	7 - 71	3.9e-15	bHLH-MYC and R2R3-MYB transcription factors N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64625 AT1G64625 AT1G64625 AT1G64625 AT5G24352 AT5G24352
fragaria_vesca	FvH4_4g16070 FvH4_4g16070 FvH4_4g16070 FvH4_5g11300 FvH4_5g11300 FvH4_5g11300 FvH4_5g11300 FvH4_5g11300
malus_domestica	MD06G1114400.v1.1 MD14G1135600.v1.1
prunus_persica	Prupe.5G127100_v2.0.a1
pyrus_communis	pycom06g10710 pycom14g10880 pycom14g10890
rosa_chinensis	RchiOBHm_Chr7g0186541
rosa_laevigata	RLG00000004836
rosa_multiflora	Rmu_sc0000645.1_g000021
rosa_roxburghii	Rroxscaffold_3G00268060
rosa_rugosa	Rorug06G0475000 Rorug06G0475000
rosa_samantha	Rh7AG066100 Rh7BG082000 Rh7CG081700 Rh7DG082700
rosa_wichuraiana	Rw7G006870 Rw7G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	3 cut(s)	138, 151, 175
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgsI	TTSAA	3 cut(s)	54, 118, 161
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	2 cut(s)	50, 221
AluI	AGCT	2 cut(s)	50, 221
Alw21I	GWGCWC	2 cut(s)	194, 223
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	3 cut(s)	138, 151, 175
AoxI	GGCC	1 cut(s)	25
BamHI	GGATCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	223
Bbv12I	GWGCWC	2 cut(s)	194, 223
BccI	CCATC	1 cut(s)	72
BciT130I	CCWGG	1 cut(s)	227
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	2 cut(s)	140, 164
BfmI	CTRYAG	1 cut(s)	8
BisI	GCNGC	1 cut(s)	151
BlsI	GCNGC	1 cut(s)	152
Bme1390I	CCNGG	1 cut(s)	227
BmiI	GGNNCC	2 cut(s)	15, 145
BmrFI	CCNGG	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	28
BsaWI	WCCGGW	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	27
BsiHKAI	GWGCWC	2 cut(s)	194, 223
BsiSI	CCGG	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	27
Bsp1286I	GDGCHC	2 cut(s)	194, 223
Bsp143I	GATC	2 cut(s)	143, 167
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	92
BspLI	GGNNCC	2 cut(s)	15, 145
BspPI	GGATC	3 cut(s)	138, 151, 175
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	2 cut(s)	143, 167
BssT1I	CCWWGG	1 cut(s)	28
Bst2UI	CCWGG	1 cut(s)	227
BstDEI	CTNAG	2 cut(s)	22, 79
BstENI	CCTNNNNNAGG	1 cut(s)	21
BstKTI	GATC	2 cut(s)	146, 170
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	2 cut(s)	143, 167
BstNI	CCWGG	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	225
BstSFI	CTRYAG	1 cut(s)	8
BstX2I	RGATCY	2 cut(s)	143, 167
BstYI	RGATCY	2 cut(s)	143, 167
BsuRI	GGCC	1 cut(s)	27
CviJI	RGCY	6 cut(s)	14, 27, 50, 73, 114, 221
CviKI_1	RGCY	6 cut(s)	14, 27, 50, 73, 114, 221
DdeI	CTNAG	2 cut(s)	22, 79
DpnI	GATC	2 cut(s)	145, 169
DpnII	GATC	2 cut(s)	143, 167
Ecl136II	GAGCTC	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	223
Eco53kI	GAGCTC	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	221
EcoNI	CCTNNNNNAGG	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	28
Fnu4HI	GCNGC	1 cut(s)	151
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	1 cut(s)	151
FspBI	CTAG	2 cut(s)	140, 164
GluI	GCNGC	1 cut(s)	151
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	1 cut(s)	57
HinfI	GANTC	3 cut(s)	4, 97, 181
HpaII	CCGG	1 cut(s)	57
Hpy188I	TCNGA	2 cut(s)	82, 96
Hpy188III	TCNNGA	2 cut(s)	118, 185
HpyF3I	CTNAG	2 cut(s)	22, 79
Kzo9I	GATC	2 cut(s)	143, 167
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	4 cut(s)	70, 96, 160, 212
MaeI	CTAG	2 cut(s)	140, 164
MalI	GATC	2 cut(s)	145, 169
MboI	GATC	2 cut(s)	143, 167
MflI	RGATCY	2 cut(s)	143, 167
MhlI	GDGCHC	2 cut(s)	194, 223
MluCI	AATT	1 cut(s)	33
MseI	TTAA	1 cut(s)	238
MspA1I	CMGCKG	1 cut(s)	150
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
NdeII	GATC	2 cut(s)	143, 167
NlaIV	GGNNCC	2 cut(s)	15, 145
PfeI	GAWTC	2 cut(s)	97, 181
PfoI	TCCNGGA	1 cut(s)	225
PkrI	GCNGC	1 cut(s)	152
Psp124BI	GAGCTC	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	15, 145
PsuI	RGATCY	2 cut(s)	143, 167
SacI	GAGCTC	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	238
SatI	GCNGC	1 cut(s)	151
Sau3AI	GATC	2 cut(s)	143, 167
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	2 cut(s)	194, 223
SetI	ASST	2 cut(s)	52, 223
SfcI	CTRYAG	1 cut(s)	8
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	1 cut(s)	33
SsiI	CCGC	1 cut(s)	150
SspMI	CTAG	2 cut(s)	140, 164
SstI	GAGCTC	1 cut(s)	223
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	1 cut(s)	28
TasI	AATT	1 cut(s)	33
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	2 cut(s)	97, 181
Tru1I	TTAA	1 cut(s)	238
Tru9I	TTAA	1 cut(s)	238
XagI	CCTNNNNNAGG	1 cut(s)	21
XspI	CTAG	2 cut(s)	140, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.