pycom14g10890
BHLH Family

transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Forward (+)
13706263 .. 13708066
1804 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g10890.1

Sequence Viewer

Length: 1359 bp
ATGACAACCACACTGAACAATGACTTCTCACAAGTAATAGAAAGTACTTCAGTGTCGTCTAGTCTGGTTAAAGGTGATAACTTTATTCATGTTCCAATTCAAACTCCAGCTAACTCTATTCAAAGTTCGGTTACAAATCCATTTAGCGCCGATGGACACGATAAATCTGTGATCATTCAGAGTGTTGATGGTTTGGGACCGGATTTTGCATGTGGTCAAGTCGGGAAGTGTTGGGAAGATACTATAATGCCAGCAACCAGTGGTGGCTACTTGGCCACTGGTACTGCTTTGACAAAATGCTTCTCAGAGTCAGAAATAACCGGTTCCATGCCTGGTCCTCGGAAGGGGTTGTTCTCAGAATTAGGACTTGAAGAGCTTTTAAATGGTAAAACTACTACTTCCAGCTCCGTAAAATGCAATCTAGAGGACCAGTCATCCACCACTAGAAAAAGGAAATCAGAATGTTTATCTGTGAATAGCAATCAGGTTCAACCGCCAAGGCTTGCAGGCTTGGATATGAGTACACATTCAGCGAAATCTTTCTATAACCTGGACAGGGCAAACAGTCTTGGTCCAAAGAAAGACTTTTTCCCAAAATCACAGGTAGGCTTATGGATTGATGACAGCTATAGCGTCAGCGCTAGAAGTGTGGTTCAAGATAAACAGCAGAAAGCTGAGGTACACACAAAGAACACCAAGAAAAGGGCAAGGCCTGGGGAGAGTACTCGACCTAGACCTAAAGATCGCCAGCAGATTCAAGACCGTATCAAAGAGTTGAAGGGGATCATCCCTACTGGTGGCAAGTGTAGCATCGATTCTTTGTTGGACCGGACAATCAAATACATGGTCTTCTTGCAAAGCGTGACAAAATATGCAGATAAGCTTAAACAGACTCATGAGCCAAAGCTAATTGGCAAGGAGAATGGAGTGGTTCTAAAAGACAACAGCACCAAATGTGGTGGTAATACACGGGCATTAGCAATTGAGGGTCAAACTGTGGTTTGCCCTATAGTAGTCGAGGACCTTGATCAGCCGGGCCAAATGCTTATCGAGATGCTTTGTGAGGAACAAGGTTTCTTTCTTGAGATAGCAGACATAATCCGCGGCTTTGGGTTAAATATCTTGAAGGGGGTTATGGAAAGCCGGGAAGATAAGATATGGGCAAGGTTTATCGTTGAGGCAACTAGGCATGTAACAAGGCTAGATGTATTCTGGTCCCTTGTCCGGTTTCTACAACAAACAACTACGGGTGTGGTTGATCCAACTAATCGGCTAAGTAATGTAGTAGATGGTGGGGTTCCTCCTATATTGGATAGTTGTCAGCAACAAATCTTGCCGCCTCCGGTCAGCTTGATTTGA

Protein Analysis

453

Amino Acids

49.55

Weight (kDa)

7.96

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH_LHW PF23176 243 - 301 2.8e-28 Transcription factor LHW bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1104
AciI CCGC 4 cut(s) 494, 1102, 1104, 1337
AclWI GGATC 2 cut(s) 791, 1253
AcoI YGGCCR 1 cut(s) 273
AcuI CTGAAG 1 cut(s) 33
AfaI GTAC 5 cut(s) 46, 283, 523, 681, 724
AfeI AGCGCT 1 cut(s) 640
AfiI CCNNNNNNNGG 5 cut(s) 344, 556, 702, 797, 1224
AgeI ACCGGT 1 cut(s) 320
AgsI TTSAA 8 cut(s) 101, 122, 371, 491, 656, 758, 778, 1126
AjnI CCWGG 3 cut(s) 331, 549, 712
AluBI AGCT 8 cut(s) 110, 376, 405, 627, 674, 883, 907, 1350
AluI AGCT 8 cut(s) 110, 376, 405, 627, 674, 883, 907, 1350
AlwI GGATC 2 cut(s) 791, 1253
Aor51HI AGCGCT 1 cut(s) 640
AoxI GGCC 3 cut(s) 273, 710, 1036
ArsI GACNNNNNNTTYG 2 cut(s) 831, 863
AsiGI ACCGGT 1 cut(s) 320
Asp700I GAANNNNTTC 1 cut(s) 539
AspLEI GCGC 2 cut(s) 149, 641
AspS9I GGNCC 8 cut(s) 197, 335, 427, 572, 826, 1021, 1036, 1215
AsuC2I CCSGG 2 cut(s) 1035, 1145
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 7 cut(s) 197, 335, 427, 572, 826, 1021, 1215
BalI TGGCCA 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 841
BbvCI CCTCAGC 1 cut(s) 675
BccI CCATC 3 cut(s) 146, 182, 1283
BciT130I CCWGG 3 cut(s) 333, 551, 714
BclI TGATCA 2 cut(s) 171, 1027
BcnI CCSGG 2 cut(s) 1035, 1145
BfaI CTAG 7 cut(s) 60, 422, 444, 642, 732, 1185, 1202
BfmI CTRYAG 2 cut(s) 628, 1008
BfoI RGCGCY 2 cut(s) 150, 642
BisI GCNGC 2 cut(s) 1105, 1337
BlsI GCNGC 2 cut(s) 1106, 1338
BmcAI AGTACT 2 cut(s) 46, 724
Bme1390I CCNGG 5 cut(s) 333, 551, 714, 1035, 1145
Bme18I GGWCC 7 cut(s) 197, 335, 427, 572, 826, 1021, 1215
BmgT120I GGNCC 8 cut(s) 197, 335, 427, 572, 826, 1021, 1036, 1215
BmiI GGNNCC 4 cut(s) 198, 325, 1217, 1299
BmrFI CCNGG 5 cut(s) 333, 551, 714, 1035, 1145
BmsI GCATC 2 cut(s) 819, 1044
BpiI GAAGAC 1 cut(s) 841
BpmI CTGGAG 1 cut(s) 90
Bpu10I CCTNAGC 1 cut(s) 675
BpuEI CTTGAG 1 cut(s) 1103
BpuMI CCSGG 2 cut(s) 1035, 1145
Bsa29I ATCGAT 1 cut(s) 813
BsaJI CCNNGG 4 cut(s) 338, 497, 713, 1102
BsaWI WCCGGW 5 cut(s) 199, 320, 828, 1224, 1342
Bsc4I CCNNNNNNNGG 5 cut(s) 344, 556, 702, 797, 1224
Bse118I RCCGGY 1 cut(s) 320
Bse1I ACTGG 4 cut(s) 258, 283, 430, 799
BseBI CCWGG 3 cut(s) 333, 551, 714
BseCI ATCGAT 1 cut(s) 813
BseDI CCNNGG 4 cut(s) 338, 497, 713, 1102
BseGI GGATG 2 cut(s) 434, 786
BseLI CCNNNNNNNGG 5 cut(s) 344, 556, 702, 797, 1224
BseMII CTCAG 3 cut(s) 318, 369, 666
BseNI ACTGG 4 cut(s) 258, 283, 430, 799
Bsh1236I CGCG 1 cut(s) 1104
BshFI GGCC 3 cut(s) 275, 712, 1038
BshTI ACCGGT 1 cut(s) 320
BshVI ATCGAT 1 cut(s) 813
BsiSI CCGG 7 cut(s) 200, 321, 829, 1034, 1144, 1225, 1343
BslFI GGGAC 2 cut(s) 210, 1201
BslI CCNNNNNNNGG 5 cut(s) 344, 556, 702, 797, 1224
BsmFI GGGAC 2 cut(s) 210, 1201
BsnI GGCC 3 cut(s) 275, 712, 1038
Bsp143I GATC 5 cut(s) 171, 742, 783, 1027, 1258
BspACI CCGC 4 cut(s) 494, 1102, 1104, 1337
BspANI GGCC 3 cut(s) 275, 712, 1038
BspCNI CTCAG 3 cut(s) 317, 368, 667
BspDI ATCGAT 1 cut(s) 813
BspFNI CGCG 1 cut(s) 1104
BspHI TCATGA 1 cut(s) 895
BspLI GGNNCC 4 cut(s) 198, 325, 1217, 1299
BspPI GGATC 2 cut(s) 791, 1253
BspQI GCTCTTC 1 cut(s) 366
BsrFI RCCGGY 1 cut(s) 320
BsrI ACTGG 4 cut(s) 258, 283, 430, 799
BssAI RCCGGY 1 cut(s) 320
BssECI CCNNGG 4 cut(s) 338, 497, 713, 1102
BssMI GATC 5 cut(s) 171, 742, 783, 1027, 1258
BssT1I CCWWGG 1 cut(s) 497
Bst2UI CCWGG 3 cut(s) 333, 551, 714
Bst4CI ACNGT 3 cut(s) 566, 764, 997
Bst6I CTCTTC 1 cut(s) 366
BstC8I GCNNGC 4 cut(s) 252, 504, 508, 749
BstDEI CTNAG 4 cut(s) 304, 355, 675, 1274
BstDSI CCRYGG 1 cut(s) 1102
BstF5I GGATG 2 cut(s) 434, 786
BstFNI CGCG 1 cut(s) 1104
BstH2I RGCGCY 2 cut(s) 150, 642
BstHHI GCGC 2 cut(s) 149, 641
BstKTI GATC 5 cut(s) 174, 745, 786, 1030, 1261
BstMBI GATC 5 cut(s) 171, 742, 783, 1027, 1258
BstMWI GCNNNNNNNGC 1 cut(s) 807
BstNI CCWGG 3 cut(s) 333, 551, 714
BstNSI RCATGY 2 cut(s) 213, 1193
BstSCI CCNGG 5 cut(s) 331, 549, 712, 1033, 1143
BstSFI CTRYAG 2 cut(s) 628, 1008
BstUI CGCG 1 cut(s) 1104
BstV2I GAAGAC 1 cut(s) 841
Bsu15I ATCGAT 1 cut(s) 813
BsuRI GGCC 3 cut(s) 275, 712, 1038
BsuTUI ATCGAT 1 cut(s) 813
BtgI CCRYGG 1 cut(s) 1102
BtsCI GGATG 2 cut(s) 434, 786
BtsIMutI CAGTG 4 cut(s) 11, 57, 265, 276
Cac8I GCNNGC 4 cut(s) 252, 504, 508, 749
CciI TCATGA 1 cut(s) 895
CfoI GCGC 2 cut(s) 149, 641
Cfr10I RCCGGY 1 cut(s) 320
Cfr13I GGNCC 8 cut(s) 197, 335, 427, 572, 826, 1021, 1036, 1215
Cfr42I CCGCGG 1 cut(s) 1105
ClaI ATCGAT 1 cut(s) 813
CseI GACGC 1 cut(s) 622
Csp6I GTAC 5 cut(s) 45, 282, 522, 680, 723
CspAI ACCGGT 1 cut(s) 320
CspCI CAANNNNNGTGG 2 cut(s) 940, 975
CviAII CATG 6 cut(s) 89, 210, 328, 844, 896, 1190
CviQI GTAC 5 cut(s) 45, 282, 522, 680, 723
DdeI CTNAG 4 cut(s) 304, 355, 675, 1274
DpnI GATC 5 cut(s) 173, 744, 785, 1029, 1260
DpnII GATC 5 cut(s) 171, 742, 783, 1027, 1258
DraI TTTAAA 1 cut(s) 381
EaeI YGGCCR 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 497
Eco147I AGGCCT 1 cut(s) 712
Eco47I GGWCC 7 cut(s) 197, 335, 427, 572, 826, 1021, 1215
Eco47III AGCGCT 1 cut(s) 640
Eco57I CTGAAG 1 cut(s) 33
EcoO109I RGGNCCY 1 cut(s) 1021
EcoRII CCWGG 3 cut(s) 331, 549, 712
EcoT14I CCWWGG 1 cut(s) 497
ErhI CCWWGG 1 cut(s) 497
FaeI CATG 6 cut(s) 92, 213, 331, 847, 899, 1193
FalI AAGNNNNNCTT 2 cut(s) 569, 601
FaqI GGGAC 2 cut(s) 210, 1201
FatI CATG 6 cut(s) 88, 209, 327, 843, 895, 1189
FbaI TGATCA 2 cut(s) 171, 1027
Fnu4HI GCNGC 2 cut(s) 1105, 1337
FokI GGATG 2 cut(s) 421, 773
Fsp4HI GCNGC 2 cut(s) 1105, 1337
FspBI CTAG 7 cut(s) 60, 422, 444, 642, 732, 1185, 1202
GlaI GCGC 2 cut(s) 148, 640
GluI GCNGC 2 cut(s) 1105, 1337
GsuI CTGGAG 1 cut(s) 90
HaeII RGCGCY 2 cut(s) 150, 642
HaeIII GGCC 3 cut(s) 275, 712, 1038
HapII CCGG 7 cut(s) 200, 321, 829, 1034, 1144, 1225, 1343
HgaI GACGC 1 cut(s) 622
HhaI GCGC 2 cut(s) 149, 641
Hin1II CATG 6 cut(s) 92, 213, 331, 847, 899, 1193
Hin6I GCGC 2 cut(s) 147, 639
HinP1I GCGC 2 cut(s) 147, 639
HindIII AAGCTT 1 cut(s) 881
HinfI GANTC 4 cut(s) 308, 754, 815, 892
HpaII CCGG 7 cut(s) 200, 321, 829, 1034, 1144, 1225, 1343
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 2 cut(s) 524, 682
Hpy188I TCNGA 6 cut(s) 180, 307, 313, 342, 358, 460
Hpy188III TCNNGA 8 cut(s) 223, 422, 656, 758, 896, 1051, 1082, 1123
Hpy8I GTNNAC 2 cut(s) 524, 682
HpyAV CCTTC 3 cut(s) 337, 772, 1120
HpyCH4III ACNGT 3 cut(s) 566, 764, 997
HpyCH4V TGCA 5 cut(s) 209, 417, 506, 856, 875
HpyF10VI GCNNNNNNNGC 1 cut(s) 807
HpyF3I CTNAG 4 cut(s) 304, 355, 675, 1274
Hsp92II CATG 6 cut(s) 92, 213, 331, 847, 899, 1193
HspAI GCGC 2 cut(s) 147, 639
Ksp22I TGATCA 2 cut(s) 171, 1027
KspI CCGCGG 1 cut(s) 1105
Kzo9I GATC 5 cut(s) 171, 742, 783, 1027, 1258
LguI GCTCTTC 1 cut(s) 366
LmnI GCTCC 1 cut(s) 410
LweI GCATC 2 cut(s) 819, 1044
MaeI CTAG 7 cut(s) 60, 422, 444, 642, 732, 1185, 1202
MaeIII GTNAC 3 cut(s) 130, 862, 1192
MalI GATC 5 cut(s) 173, 744, 785, 1029, 1260
MboI GATC 5 cut(s) 171, 742, 783, 1027, 1258
MboII GAAGA 4 cut(s) 248, 383, 841, 1160
MfeI CAATTG 1 cut(s) 981
MlsI TGGCCA 1 cut(s) 275
MluCI AATT 4 cut(s) 96, 359, 909, 981
MluNI TGGCCA 1 cut(s) 275
MlyI GAGTC 2 cut(s) 317, 886
MmeI TCCRAC 2 cut(s) 804, 1286
MnlI CCTC 9 cut(s) 348, 418, 670, 979, 1012, 1057, 1171, 1311, 1350
Mox20I TGGCCA 1 cut(s) 275
MroXI GAANNNNTTC 1 cut(s) 539
MscI TGGCCA 1 cut(s) 275
MseI TTAA 4 cut(s) 69, 380, 885, 1115
Msp20I TGGCCA 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 1104
MspI CCGG 7 cut(s) 200, 321, 829, 1034, 1144, 1225, 1343
MspR9I CCNGG 5 cut(s) 333, 551, 714, 1035, 1145
MunI CAATTG 1 cut(s) 981
MvaI CCWGG 3 cut(s) 333, 551, 714
MvnI CGCG 1 cut(s) 1104
MwoI GCNNNNNNNGC 1 cut(s) 807
NciI CCSGG 2 cut(s) 1035, 1145
NdeII GATC 5 cut(s) 171, 742, 783, 1027, 1258
NlaIII CATG 6 cut(s) 92, 213, 331, 847, 899, 1193
NlaIV GGNNCC 4 cut(s) 198, 325, 1217, 1299
NmuCI GTSAC 1 cut(s) 862
NspI RCATGY 2 cut(s) 213, 1193
PagI TCATGA 1 cut(s) 895
PceI AGGCCT 1 cut(s) 712
PciSI GCTCTTC 1 cut(s) 366
PdmI GAANNNNTTC 1 cut(s) 539
PfeI GAWTC 2 cut(s) 754, 815
PinAI ACCGGT 1 cut(s) 320
PkrI GCNGC 2 cut(s) 1106, 1338
PleI GAGTC 2 cut(s) 316, 886
PpsI GAGTC 2 cut(s) 316, 886
PpuMI RGGWCCY 1 cut(s) 1021
Psp5II RGGWCCY 1 cut(s) 1021
Psp6I CCWGG 3 cut(s) 331, 549, 712
PspGI CCWGG 3 cut(s) 331, 549, 712
PspN4I GGNNCC 4 cut(s) 198, 325, 1217, 1299
PspPI GGNCC 8 cut(s) 197, 335, 427, 572, 826, 1021, 1036, 1215
PspPPI RGGWCCY 1 cut(s) 1021
RsaI GTAC 5 cut(s) 46, 283, 523, 681, 724
RsaNI GTAC 5 cut(s) 45, 282, 522, 680, 723
SacII CCGCGG 1 cut(s) 1105
SapI GCTCTTC 1 cut(s) 366
SaqAI TTAA 4 cut(s) 69, 380, 885, 1115
SatI GCNGC 2 cut(s) 1105, 1337
Sau3AI GATC 5 cut(s) 171, 742, 783, 1027, 1258
Sau96I GGNCC 8 cut(s) 197, 335, 427, 572, 826, 1021, 1036, 1215
ScaI AGTACT 2 cut(s) 46, 724
SchI GAGTC 2 cut(s) 317, 886
ScrFI CCNGG 5 cut(s) 333, 551, 714, 1035, 1145
SfaNI GCATC 2 cut(s) 819, 1044
SfcI CTRYAG 2 cut(s) 628, 1008
Sfr303I CCGCGG 1 cut(s) 1105
SgrBI CCGCGG 1 cut(s) 1105
SinI GGWCC 7 cut(s) 197, 335, 427, 572, 826, 1021, 1215
SmlI CTYRAG 1 cut(s) 1082
SmoI CTYRAG 1 cut(s) 1082
Sse9I AATT 4 cut(s) 96, 359, 909, 981
SseBI AGGCCT 1 cut(s) 712
SsiI CCGC 4 cut(s) 494, 1102, 1104, 1337
SspMI CTAG 7 cut(s) 60, 422, 444, 642, 732, 1185, 1202
StuI AGGCCT 1 cut(s) 712
StyD4I CCNGG 5 cut(s) 331, 549, 712, 1033, 1143
StyI CCWWGG 1 cut(s) 497
TaaI ACNGT 3 cut(s) 566, 764, 997
TaqI TCGA 4 cut(s) 727, 813, 1017, 1050
TasI AATT 4 cut(s) 96, 359, 909, 981
TatI WGTACW 3 cut(s) 44, 521, 722
TauI GCSGC 2 cut(s) 1107, 1339
TfiI GAWTC 2 cut(s) 754, 815
Tru1I TTAA 4 cut(s) 69, 380, 885, 1115
Tru9I TTAA 4 cut(s) 69, 380, 885, 1115
TscAI CASTG 4 cut(s) 18, 57, 265, 283
TseFI GTSAC 1 cut(s) 862
Tsp45I GTSAC 1 cut(s) 862
TspDTI ATGAA 1 cut(s) 77
TspGWI ACGGA 1 cut(s) 397
TspRI CASTG 4 cut(s) 18, 57, 265, 283
VpaK11BI GGWCC 7 cut(s) 197, 335, 427, 572, 826, 1021, 1215
XbaI TCTAGA 1 cut(s) 421
XceI RCATGY 2 cut(s) 213, 1193
XmnI GAANNNNTTC 1 cut(s) 539
XspI CTAG 7 cut(s) 60, 422, 444, 642, 732, 1185, 1202
ZrmI AGTACT 2 cut(s) 46, 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.