Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004477

Physical Location & Seq

Genomic Coordinates Forward (+)

13704091 .. 13706211

Gene Structure 2121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g10880.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCCCAAATGGGTGAAAGTTCAGTGGTAAGAGAGAGGCTGAGGAGTCTGTGTGTTAGCAATGGGTGGTCTTATGGGGTTTTCTGGCGATTTGATCACAGAAATTCCATGTTGTTGACAATGGGAGATGCCTACTATGAAGATCATGTGGGAGCAGTGATTGAAAATATGCTTCCACAGGTCCATGTACTTGGAGAAGGTATTATTGGGCAAACCGCTTTCACCGGAAAACATCGATGGATGCATTCAGATGCTCACGGTGGAGGATGGAATCCATGCAGTTCTCTTGAAAATCAAGATATGTTTCAGGATTATTCTGAGTTCAGTTGCCAATTTTCTTCTGGTATAAAGACAATTGCAATAATCTCCGTTGAACCACGAGGAGTACTTCAGTTAGGATCCACCGAAAAGATTATGGAGAGGCTGGAAGTTTTGGATGAAACAAAAAGGTTGTTTCGGGAGATGGAAAATCTTGATGGGCTTATTCCTTTGGAAAATGCACCTTCATCCATGAACAATGAAACTAGTGATCTAAATGAGTTGTTTGCTTCATTGATTTCATCTGGGAATTCCTACAATGGAGATGTTAACTTGACTCCGGGTGACAAATGTGACGAACACCGAGGAAATATTATTTCTGCAGTGGGTTTTCAGTCTACATCATCTGATGATATTGGCTCAGCTGATAAAACCCCCTGGTTTAGTACGTGGAGTGCCGAATCTTCACTTTTGACTTCATTCGAACCGCAGTTGGCATCGGAAATTATTCTTCATGATTCATTCGAGTCTTGCAGAGATACAGCGAGGAATATTCAGGTGGACTCGGCATTCACTTCATTAGCTGACTTCGAGAAACCTATTGAAGGAAGCTGTGGATATCAGATGGATAACCAGCAATCTCTGCATGGATTCCCGGTGGAGTGTAATCCAGCTGATCTAAGTATAGATCTCTCTAGATTGTACCAGTTGAACAACTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0003674 GO:0003700 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007140 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010154 GO:0010468 GO:0010556 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048232 GO:0048285 GO:0048316 GO:0048364 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051321 GO:0051704 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0090058 GO:0099402 GO:0140013 GO:0140096 GO:0140110 GO:1901564 GO:1903046 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bHLH-MYC_N

Protein Analysis

327

Amino Acids

36.2

Weight (kDa)

4.51

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64625 AT1G64625 AT1G64625 AT1G64625 AT5G24352 AT5G24352
fragaria_vesca	FvH4_4g16070 FvH4_4g16070 FvH4_4g16070 FvH4_5g11300 FvH4_5g11300 FvH4_5g11300 FvH4_5g11300 FvH4_5g11300
malus_domestica	MD06G1114400.v1.1 MD14G1135600.v1.1
prunus_persica	Prupe.5G127100_v2.0.a1
pyrus_communis	pycom06g10710 pycom14g10880 pycom14g10890
rosa_chinensis	RchiOBHm_Chr7g0186541
rosa_laevigata	RLG00000004836
rosa_multiflora	Rmu_sc0000645.1_g000021
rosa_roxburghii	Rroxscaffold_3G00268060
rosa_rugosa	Rorug06G0475000 Rorug06G0475000
rosa_samantha	Rh7AG066100 Rh7BG082000 Rh7CG081700 Rh7DG082700
rosa_wichuraiana	Rw7G006870 Rw7G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	656
AciI	CCGC	2 cut(s)	216, 746
AclWI	GGATC	2 cut(s)	393, 406
AcsI	RAATTY	2 cut(s)	103, 568
AcuI	CTGAAG	1 cut(s)	374
AfaI	GTAC	4 cut(s)	189, 387, 706, 962
AfiI	CCNNNNNNNGG	1 cut(s)	863
AgsI	TTSAA	5 cut(s)	164, 290, 374, 863, 970
AhlI	ACTAGT	1 cut(s)	524
AjnI	CCWGG	1 cut(s)	695
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AluBI	AGCT	4 cut(s)	683, 842, 870, 932
AluI	AGCT	4 cut(s)	683, 842, 870, 932
AlwI	GGATC	2 cut(s)	393, 406
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	2 cut(s)	103, 568
Asp700I	GAANNNNTTC	1 cut(s)	765
AspS9I	GGNCC	2 cut(s)	4, 181
AsuC2I	CCSGG	2 cut(s)	600, 914
AsuHPI	GGTGA	3 cut(s)	26, 214, 614
AsuII	TTCGAA	1 cut(s)	741
AvaII	GGWCC	1 cut(s)	181
BamHI	GGATCC	1 cut(s)	398
BauI	CACGAG	1 cut(s)	378
BbvCI	CCTCAGC	1 cut(s)	41
BccI	CCATC	5 cut(s)	231, 261, 457, 470, 877
BciT130I	CCWGG	1 cut(s)	697
BclI	TGATCA	1 cut(s)	94
BcnI	CCSGG	2 cut(s)	600, 914
BcuI	ACTAGT	1 cut(s)	524
BfaI	CTAG	3 cut(s)	525, 954, 979
BfmI	CTRYAG	1 cut(s)	639
BglII	AGATCT	1 cut(s)	946
BlpI	GCTNAGC	1 cut(s)	679
BmcAI	AGTACT	1 cut(s)	387
Bme1390I	CCNGG	3 cut(s)	600, 697, 914
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	2 cut(s)	4, 181
BmiI	GGNNCC	1 cut(s)	400
BmrFI	CCNGG	3 cut(s)	600, 697, 914
BmsI	GCATC	4 cut(s)	118, 231, 241, 764
Bpu10I	CCTNAGC	1 cut(s)	41
Bpu1102I	GCTNAGC	1 cut(s)	679
Bpu14I	TTCGAA	1 cut(s)	741
BpuMI	CCSGG	2 cut(s)	600, 914
Bsa29I	ATCGAT	1 cut(s)	235
BsaAI	YACGTR	1 cut(s)	708
BsaJI	CCNNGG	2 cut(s)	622, 695
BsaWI	WCCGGW	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	1 cut(s)	863
Bse1I	ACTGG	1 cut(s)	964
Bse3DI	GCAATG	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	697
BseCI	ATCGAT	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	622, 695
BseGI	GGATG	4 cut(s)	246, 272, 442, 506
BseLI	CCNNNNNNNGG	1 cut(s)	863
BseMI	GCAATG	1 cut(s)	67
BseMII	CTCAG	3 cut(s)	32, 309, 693
BseNI	ACTGG	1 cut(s)	964
BseRI	GAGGAG	2 cut(s)	58, 396
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	235
BsiSI	CCGG	3 cut(s)	225, 599, 914
BslI	CCNNNNNNNGG	1 cut(s)	863
BsmI	GAATGC	2 cut(s)	244, 827
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	741
Bsp143I	GATC	6 cut(s)	94, 142, 398, 529, 934, 946
Bsp1720I	GCTNAGC	1 cut(s)	679
BspACI	CCGC	2 cut(s)	216, 746
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	33, 310, 692
BspDI	ATCGAT	1 cut(s)	235
BspHI	TCATGA	1 cut(s)	772
BspLI	GGNNCC	1 cut(s)	400
BspMAI	CTGCAG	1 cut(s)	643
BspPI	GGATC	2 cut(s)	393, 406
BspT104I	TTCGAA	1 cut(s)	741
BsrDI	GCAATG	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	964
BssECI	CCNNGG	2 cut(s)	622, 695
BssMI	GATC	6 cut(s)	94, 142, 398, 529, 934, 946
BssSI	CACGAG	1 cut(s)	378
Bst2BI	CACGAG	1 cut(s)	378
Bst2UI	CCWGG	1 cut(s)	697
Bst4CI	ACNGT	1 cut(s)	260
BstAPI	GCANNNNNTGC	1 cut(s)	901
BstBAI	YACGTR	1 cut(s)	708
BstBI	TTCGAA	1 cut(s)	741
BstDEI	CTNAG	4 cut(s)	41, 318, 679, 938
BstENI	CCTNNNNNAGG	1 cut(s)	861
BstF5I	GGATG	4 cut(s)	246, 272, 442, 506
BstKTI	GATC	6 cut(s)	97, 145, 401, 532, 937, 949
BstMBI	GATC	6 cut(s)	94, 142, 398, 529, 934, 946
BstMWI	GCNNNNNNNGC	1 cut(s)	901
BstNI	CCWGG	1 cut(s)	697
BstSCI	CCNGG	3 cut(s)	598, 695, 912
BstSFI	CTRYAG	1 cut(s)	639
BstX2I	RGATCY	2 cut(s)	398, 946
BstXI	CCANNNNNNTGG	1 cut(s)	191
BstYI	RGATCY	2 cut(s)	398, 946
Bsu15I	ATCGAT	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	235
BtsCI	GGATG	4 cut(s)	246, 272, 442, 506
BtsI	GCAGTG	2 cut(s)	162, 648
BtsIMutI	CAGTG	3 cut(s)	30, 162, 648
CciI	TCATGA	1 cut(s)	772
Cfr13I	GGNCC	2 cut(s)	4, 181
ClaI	ATCGAT	1 cut(s)	235
Csp6I	GTAC	4 cut(s)	188, 386, 705, 961
CviAII	CATG	7 cut(s)	109, 146, 185, 276, 511, 773, 905
CviJI	RGCY	9 cut(s)	5, 40, 424, 481, 678, 683, 842, 870, 932
CviKI_1	RGCY	9 cut(s)	5, 40, 424, 481, 678, 683, 842, 870, 932
CviQI	GTAC	4 cut(s)	188, 386, 705, 961
DdeI	CTNAG	4 cut(s)	41, 318, 679, 938
DpnI	GATC	6 cut(s)	96, 144, 400, 531, 936, 948
DpnII	GATC	6 cut(s)	94, 142, 398, 529, 934, 946
Eco32I	GATATC	1 cut(s)	878
Eco47I	GGWCC	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	374
EcoNI	CCTNNNNNAGG	1 cut(s)	861
EcoRI	GAATTC	1 cut(s)	568
EcoRII	CCWGG	1 cut(s)	695
EcoRV	GATATC	1 cut(s)	878
EcoT22I	ATGCAT	1 cut(s)	246
FaeI	CATG	7 cut(s)	112, 149, 188, 279, 514, 776, 908
FatI	CATG	7 cut(s)	108, 145, 184, 275, 510, 772, 904
FbaI	TGATCA	1 cut(s)	94
FblI	GTMKAC	1 cut(s)	656
FokI	GGATG	4 cut(s)	253, 279, 449, 493
FspBI	CTAG	3 cut(s)	525, 954, 979
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	225, 599, 914
Hin1II	CATG	7 cut(s)	112, 149, 188, 279, 514, 776, 908
HincII	GTYRAC	2 cut(s)	117, 589
HindII	GTYRAC	2 cut(s)	117, 589
HinfI	GANTC	8 cut(s)	46, 271, 595, 719, 776, 785, 821, 909
HpaI	GTTAAC	1 cut(s)	589
HpaII	CCGG	3 cut(s)	225, 599, 914
HphI	GGTGA	3 cut(s)	26, 214, 614
Hpy166II	GTNNAC	4 cut(s)	117, 589, 657, 820
Hpy188I	TCNGA	5 cut(s)	250, 319, 667, 760, 882
Hpy188III	TCNNGA	8 cut(s)	287, 296, 308, 458, 473, 773, 850, 954
Hpy8I	GTNNAC	4 cut(s)	117, 589, 657, 820
HpyAV	CCTTC	3 cut(s)	191, 513, 857
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	707
HpyCH4V	TGCA	7 cut(s)	244, 279, 359, 500, 641, 792, 904
HpyF10VI	GCNNNNNNNGC	1 cut(s)	901
HpyF3I	CTNAG	4 cut(s)	41, 318, 679, 938
HpySE526I	ACGT	1 cut(s)	707
Hsp92II	CATG	7 cut(s)	112, 149, 188, 279, 514, 776, 908
Ksp22I	TGATCA	1 cut(s)	94
KspAI	GTTAAC	1 cut(s)	589
Kzo9I	GATC	6 cut(s)	94, 142, 398, 529, 934, 946
LmnI	GCTCC	1 cut(s)	152
LweI	GCATC	4 cut(s)	118, 231, 241, 764
MaeI	CTAG	3 cut(s)	525, 954, 979
MaeII	ACGT	1 cut(s)	707
MaeIII	GTNAC	2 cut(s)	602, 611
MalI	GATC	6 cut(s)	96, 144, 400, 531, 936, 948
MboI	GATC	6 cut(s)	94, 142, 398, 529, 934, 946
MboII	GAAGA	4 cut(s)	152, 330, 714, 761
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	2 cut(s)	398, 946
MluCI	AATT	5 cut(s)	103, 332, 354, 568, 762
MlyI	GAGTC	4 cut(s)	55, 589, 794, 815
MnlI	CCTC	7 cut(s)	30, 36, 257, 374, 414, 617, 798
Mph1103I	ATGCAT	1 cut(s)	246
MroXI	GAANNNNTTC	1 cut(s)	765
MseI	TTAA	1 cut(s)	588
MslI	CAYNNNNRTG	1 cut(s)	249
MspA1I	CMGCKG	2 cut(s)	683, 932
MspI	CCGG	3 cut(s)	225, 599, 914
MspR9I	CCNGG	3 cut(s)	600, 697, 914
MunI	CAATTG	1 cut(s)	354
Mva1269I	GAATGC	2 cut(s)	244, 827
MvaI	CCWGG	1 cut(s)	697
MwoI	GCNNNNNNNGC	1 cut(s)	901
NciI	CCSGG	2 cut(s)	600, 914
NdeII	GATC	6 cut(s)	94, 142, 398, 529, 934, 946
NlaIII	CATG	7 cut(s)	112, 149, 188, 279, 514, 776, 908
NlaIV	GGNNCC	1 cut(s)	400
NmeAIII	GCCGAG	1 cut(s)	803
NmuCI	GTSAC	2 cut(s)	602, 611
NsiI	ATGCAT	1 cut(s)	246
NspV	TTCGAA	1 cut(s)	741
PagI	TCATGA	1 cut(s)	772
PctI	GAATGC	2 cut(s)	244, 827
PdmI	GAANNNNTTC	1 cut(s)	765
PfeI	GAWTC	4 cut(s)	271, 719, 776, 909
PleI	GAGTC	4 cut(s)	54, 589, 793, 815
PpsI	GAGTC	4 cut(s)	54, 589, 793, 815
Ppu21I	YACGTR	1 cut(s)	708
Psp6I	CCWGG	1 cut(s)	695
PspGI	CCWGG	1 cut(s)	695
PspN4I	GGNNCC	1 cut(s)	400
PspPI	GGNCC	2 cut(s)	4, 181
PstI	CTGCAG	1 cut(s)	643
PsuI	RGATCY	2 cut(s)	398, 946
PvuII	CAGCTG	2 cut(s)	683, 932
RsaI	GTAC	4 cut(s)	189, 387, 706, 962
RsaNI	GTAC	4 cut(s)	188, 386, 705, 961
RseI	CAYNNNNRTG	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	588
Sau3AI	GATC	6 cut(s)	94, 142, 398, 529, 934, 946
Sau96I	GGNCC	2 cut(s)	4, 181
ScaI	AGTACT	1 cut(s)	387
SchI	GAGTC	4 cut(s)	55, 589, 794, 815
ScrFI	CCNGG	3 cut(s)	600, 697, 914
SfaNI	GCATC	4 cut(s)	118, 231, 241, 764
SfcI	CTRYAG	1 cut(s)	639
SfuI	TTCGAA	1 cut(s)	741
SinI	GGWCC	1 cut(s)	181
SmiMI	CAYNNNNRTG	1 cut(s)	249
SpeI	ACTAGT	1 cut(s)	524
Sse9I	AATT	5 cut(s)	103, 332, 354, 568, 762
SsiI	CCGC	2 cut(s)	216, 746
SspI	AATATT	2 cut(s)	631, 811
SspMI	CTAG	3 cut(s)	525, 954, 979
StyD4I	CCNGG	3 cut(s)	598, 695, 912
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	1 cut(s)	710
TaqI	TCGA	4 cut(s)	235, 741, 783, 849
TasI	AATT	5 cut(s)	103, 332, 354, 568, 762
TatI	WGTACW	2 cut(s)	187, 385
TfiI	GAWTC	4 cut(s)	271, 719, 776, 909
Tru1I	TTAA	1 cut(s)	588
Tru9I	TTAA	1 cut(s)	588
TscAI	CASTG	3 cut(s)	30, 162, 648
TseFI	GTSAC	2 cut(s)	602, 611
Tsp45I	GTSAC	2 cut(s)	602, 611
TspGWI	ACGGA	1 cut(s)	358
TspRI	CASTG	3 cut(s)	30, 162, 648
VpaK11BI	GGWCC	1 cut(s)	181
XagI	CCTNNNNNAGG	1 cut(s)	861
XapI	RAATTY	2 cut(s)	103, 568
XbaI	TCTAGA	1 cut(s)	953
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	656
XmnI	GAANNNNTTC	1 cut(s)	765
XspI	CTAG	3 cut(s)	525, 954, 979
ZrmI	AGTACT	1 cut(s)	387
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.