Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004477

Physical Location & Seq

Genomic Coordinates Reverse (-)

62900502 .. 62904398

Gene Structure 3897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004836

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2355 bp

ATGGGTGAAGCTGAGAAAGGTTCAGTGATCAAAGAGAGGCTTAAGGGTCTTTGTGTTACTAATGGGTGGTCTTATGGGGTTTTGTGGCGTTTTGATCAGAGAAATTCCATTGTCTGGAAATGTTTAAAATGGTTAAAAGTTTGCTTCTTCTTTGTTCTTATTTTCCTCTCAAAGATTGGTCGAGTATTTTTCTGCATGCCAGCTGTTTTACATTTTGTTGTTATAGGTCAAACTGCTTTCACTGGGAAGCACCAATGGATGCATTCAGATGCTTACAATGGACAGTGGAATTCATGCAATCCCATCGAAAGTTGTCGAGATTTGTTTCAGGATGATTCCGAGTTTCGTTCCCAATTTTCCTCTGGTATAAAGACAATTGCAACAGTCTCTGTAGAATCAGGAGTAATTCAGTTTGGTTCCACTGAAAAGATTATGGAGAGGTTGGAGTTTTTAGATGAAACAAAAACGGTGTTCCGGGAGACCAAAAATCTTCATGGGCTTATTCCTCTAGCAAGTACACCCTCATGTTTGAACAATGAATCCAATGATCTAAATGAATTGTTTGCTTCCTTAATTTCATCTGCAAACTTTCATGGCGACGTTGCCAACATGCTTGGGGATAAATCGAAAGATGTAGGAGGAAATTGTTTATCTGCAATGAATTTACAGTCTGCAGCATCTGATGACATTGGCTCAGCTGATAAAACCCCGTGGCTTAGTACATGGAACACTGAATCTTCTTTGTTGGCTTCATATGACTCACATTTGGCATCTGATATTGGGGTTCAGGATTCTCTCAAGACTTGCAGAAATACAGCTCAAGACTCAACTCTCATTCAAGGCAGCTGCGGATGTCAGATGGATAACCAGCAATATCTACATGGATACCCTGTAGAGTTTAACCGAACTGATCGTATTACAGATGTTTCCAAATCATTCATGGATGATCTTTCTCAGTGGTTTGCTGCTTCACCCGAACAGAACTTCAATGGAATGGCAACCACAATGAATGGTGACCTCTCGCAAGTGTTTGAAAGTACTTCAGTGTCACCTAGTTTGGTTAAAGGTGATACGTTTATCAATGTACCAATTGAGCATCCAGCAACTTCTATTCAAAGTTCCATCACGAATGCATTCAGTGCTGATGCTCACGAGAAATCTGTGATCATTCAGAGTGCTGGAAATGATTTGTTTCATAGTCTGGGAATAGATTTCGGGTGCGGTCAAGTCAGCGATTGTTGGGAAGAGAGTATAATGCCAGTAGTCAGTGGTGGCTGCTTGGCTGCCAGTACTGATTTGACCAAAGAGACAGAAGTTGGTTCTGCGGCTGTCCCCCGGAGAGGGTTATTCTCAGAATTAGGACTAGAAGAGCTTTTAAATGGTACGAGTACTACCAGCTCTGTGACTAAATGCAGTGTAGAAGACCAATCATCCACTAGGAAAAGGAAATTAGAAAGTTCATCTGTTGGCAGTAATCAGGTACAGTTAGCAAGGCTTGCTGGCTCTGGAGGGAGCATGCATTTGATGGGACCTTTGTATAACTTGGACAAGACAAACTGTTTTGTACCAAAGAAAGAGGTTCTCCCAAAATCACAGGTGGGCTTATGGATCGATGATAGCTACAGTGTCAATGCTAGAAGTGCGGCTCAAGCAAAACCACAGAAGGCTGAGGATCACACAAAGACTGCCAAGAAGAGGGCAAAGCCTGGAGAGAGTACTCGACCAAGGCCCAAGGATCGGCAGCAGATCCAAGACCGTATGAAAGACTTGAGGGGGATGATTCCCAATGGTGGCAAGTGTAGCATTGATGCTTTGCTGGACCGCACCATCAAGTACATGATTTTCTTACAAGGTGTGACAAAACATGCTGATAAGCTTAAACAGCCTCATGAGTCAAAGCTGACTGGAAAGGAGAATGGTGTGGTTCTAAAAGATCAGAGCAGTAGATCTGGTGGTAACAATACTTGGGCGTTAGCAGTTGAGGGTCAAAATGTGGTTTGCCCTATACTCGTCGAGGACCTTAGTACACCTGGCCAAATGCTTATTGAGATCCTCTGTGAAGAGCGTGGTTTCTTTCTCGAGTTGGCAGATGAAATACGGGGCATCGGGTTGAATATCTTGAAGGGGGTGATGGAGAGTCGGGAGGATAAGATATGGGCGAGCTTTATCGTTGAGGCAACTAGGCATGTAACCAGAATAGAAGTGTTTTGGTCCCTTGTCCGGCTTCTTCAGCAAAGTGGTACCAGTGTGGTTGATCCAACCAGTCGGCCCAGCAATGTAGTAGACAACGGTTTTCCTTCTGTGTTGGATAGTTTCCCGCCATGTAGTTTTCCTCCTCCCATCAGCTTGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0003674 GO:0003700 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007140 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010154 GO:0010468 GO:0010556 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048232 GO:0048285 GO:0048316 GO:0048364 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051321 GO:0051704 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0090058 GO:0099402 GO:0140013 GO:0140096 GO:0140110 GO:1901564 GO:1903046 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bHLH-MYC_N

Protein Analysis

785

Amino Acids

86.02

Weight (kDa)

5.65

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	74 - 158	1.8e-13	bHLH-MYC and R2R3-MYB transcription factors N-terminal
bHLH_LHW	PF23176	574 - 634	1.1e-28	Transcription factor LHW bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64625 AT1G64625 AT1G64625 AT1G64625 AT5G24352 AT5G24352
fragaria_vesca	FvH4_4g16070 FvH4_4g16070 FvH4_4g16070 FvH4_5g11300 FvH4_5g11300 FvH4_5g11300 FvH4_5g11300 FvH4_5g11300
malus_domestica	MD06G1114400.v1.1 MD14G1135600.v1.1
prunus_persica	Prupe.5G127100_v2.0.a1
pyrus_communis	pycom06g10710 pycom14g10880 pycom14g10890
rosa_chinensis	RchiOBHm_Chr7g0186541
rosa_laevigata	RLG00000004836
rosa_multiflora	Rmu_sc0000645.1_g000021
rosa_roxburghii	Rroxscaffold_3G00268060
rosa_rugosa	Rorug06G0475000 Rorug06G0475000
rosa_samantha	Rh7AG066100 Rh7BG082000 Rh7CG081700 Rh7DG082700
rosa_wichuraiana	Rw7G006870 Rw7G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	2240
AccB1I	GGYRCC	1 cut(s)	2240
AccB7I	CCANNNNNTGG	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	2283
AciI	CCGC	6 cut(s)	849, 1221, 1325, 1643, 1822, 2318
AclWI	GGATC	6 cut(s)	1616, 1680, 1741, 1743, 2044, 2249
AcoI	YGGCCR	1 cut(s)	2032
AcsI	RAATTY	3 cut(s)	103, 289, 661
AcuI	CTGAAG	2 cut(s)	1026, 2213
AfiI	CCNNNNNNNGG	7 cut(s)	114, 1340, 1341, 1695, 1737, 1790, 2220
AflII	CTTAAG	1 cut(s)	41
AgsI	TTSAA	7 cut(s)	532, 839, 988, 1034, 1115, 2113, 2122
AjnI	CCWGG	2 cut(s)	1705, 2029
AloI	GAACNNNNNNTCC	2 cut(s)	524, 556
Alw26I	GTCTC	3 cut(s)	391, 473, 1301
AlwI	GGATC	6 cut(s)	1616, 1680, 1741, 1743, 2044, 2249
AlwNI	CAGNNNCTG	2 cut(s)	389, 680
Ama87I	CYCGRG	1 cut(s)	2078
AoxI	GGCC	3 cut(s)	1727, 2032, 2267
ApeKI	GCWGC	7 cut(s)	674, 843, 846, 965, 1275, 1283, 1741
ApoI	RAATTY	3 cut(s)	103, 289, 661
Asp700I	GAANNNNTTC	1 cut(s)	1133
Asp718I	GGTACC	1 cut(s)	2240
AspS9I	GGNCC	6 cut(s)	1529, 1728, 1819, 2017, 2211, 2268
AsuC2I	CCSGG	2 cut(s)	476, 1336
AsuHPI	GGTGA	6 cut(s)	17, 963, 1025, 1041, 1079, 2140
AvaI	CYCGRG	1 cut(s)	2078
AvaII	GGWCC	4 cut(s)	1529, 1819, 2017, 2211
BaeI	ACNNNNGTAYC	2 cut(s)	2232, 2265
BalI	TGGCCA	1 cut(s)	2034
BanI	GGYRCC	1 cut(s)	2240
BauI	CACGAG	1 cut(s)	1151
BbsI	GAAGAC	1 cut(s)	1428
BbvCI	CCTCAGC	1 cut(s)	1668
BbvI	GCAGC	7 cut(s)	686, 833, 855, 952, 1262, 1270, 1753
BccI	CCATC	7 cut(s)	311, 853, 1130, 1519, 1835, 2125, 2348
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BciT130I	CCWGG	2 cut(s)	1707, 2031
BciVI	GTATCC	1 cut(s)	878
BclI	TGATCA	3 cut(s)	27, 94, 1164
BcnI	CCSGG	2 cut(s)	476, 1336
BcoDI	GTCTC	3 cut(s)	391, 473, 1301
BfaI	CTAG	6 cut(s)	509, 1053, 1364, 1437, 1635, 2181
BfmI	CTRYAG	4 cut(s)	390, 672, 891, 1621
BfrI	CTTAAG	1 cut(s)	41
BfuI	GTATCC	1 cut(s)	878
BglII	AGATCT	1 cut(s)	1946
BisI	GCNGC	9 cut(s)	675, 844, 847, 966, 1276, 1284, 1326, 1644, 1742
BlpI	GCTNAGC	1 cut(s)	694
BlsI	GCNGC	9 cut(s)	676, 845, 848, 967, 1277, 1285, 1327, 1645, 1743
BmcAI	AGTACT	4 cut(s)	1039, 1291, 1390, 1717
Bme1390I	CCNGG	4 cut(s)	476, 1336, 1707, 2031
Bme18I	GGWCC	4 cut(s)	1529, 1819, 2017, 2211
BmeT110I	CYCGRG	1 cut(s)	2078
BmgT120I	GGNCC	6 cut(s)	1529, 1728, 1819, 2017, 2211, 2268
BmiI	GGNNCC	4 cut(s)	418, 1530, 2213, 2242
BmrFI	CCNGG	4 cut(s)	476, 1336, 1707, 2031
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	8 cut(s)	249, 259, 686, 779, 1105, 1135, 1798, 2112
BmuI	ACTGGG	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	1428
BpmI	CTGGAG	2 cut(s)	1527, 1728
Bpu10I	CCTNAGC	1 cut(s)	1668
Bpu1102I	GCTNAGC	1 cut(s)	694
BpuEI	CTTGAG	4 cut(s)	782, 804, 1632, 1789
BpuMI	CCSGG	2 cut(s)	476, 1336
Bsa29I	ATCGAT	1 cut(s)	1611
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	4 cut(s)	710, 1334, 1724, 1731
Bsc4I	CCNNNNNNNGG	7 cut(s)	114, 1340, 1341, 1695, 1737, 1790, 2220
Bse1I	ACTGG	6 cut(s)	247, 1259, 1287, 1909, 2244, 2262
Bse3DI	GCAATG	2 cut(s)	663, 2281
BseBI	CCWGG	2 cut(s)	1707, 2031
BseCI	ATCGAT	1 cut(s)	1611
BseDI	CCNNGG	4 cut(s)	710, 1334, 1724, 1731
BseGI	GGATG	7 cut(s)	264, 337, 857, 949, 1096, 1430, 1782
BseLI	CCNNNNNNNGG	7 cut(s)	114, 1340, 1341, 1695, 1737, 1790, 2220
BseMI	GCAATG	2 cut(s)	663, 2281
BseMII	CTCAG	4 cut(s)	708, 968, 1365, 1659
BseNI	ACTGG	6 cut(s)	247, 1259, 1287, 1909, 2244, 2262
BseRI	GAGGAG	1 cut(s)	2325
BseXI	GCAGC	7 cut(s)	686, 833, 855, 952, 1262, 1270, 1753
BseYI	CCCAGC	1 cut(s)	2270
BshFI	GGCC	3 cut(s)	1729, 2034, 2269
BshNI	GGYRCC	1 cut(s)	2240
BshVI	ATCGAT	1 cut(s)	1611
BsiHKCI	CYCGRG	1 cut(s)	2078
BsiSI	CCGG	3 cut(s)	475, 1336, 2221
BslFI	GGGAC	3 cut(s)	1316, 1542, 2197
BslI	CCNNNNNNNGG	7 cut(s)	114, 1340, 1341, 1695, 1737, 1790, 2220
BsmAI	GTCTC	3 cut(s)	391, 473, 1301
BsmFI	GGGAC	3 cut(s)	1316, 1542, 2197
BsmI	GAATGC	3 cut(s)	262, 1133, 1135
BsnI	GGCC	3 cut(s)	1729, 2034, 2269
Bso31I	GGTCTC	1 cut(s)	473
BsoBI	CYCGRG	1 cut(s)	2078
Bsp1720I	GCTNAGC	1 cut(s)	694
BspACI	CCGC	6 cut(s)	849, 1221, 1325, 1643, 1822, 2318
BspANI	GGCC	3 cut(s)	1729, 2034, 2269
BspCNI	CTCAG	5 cut(s)	4, 707, 967, 1364, 1660
BspDI	ATCGAT	1 cut(s)	1611
BspHI	TCATGA	1 cut(s)	1888
BspLI	GGNNCC	4 cut(s)	418, 1530, 2213, 2242
BspMAI	CTGCAG	1 cut(s)	676
BspPI	GGATC	6 cut(s)	1616, 1680, 1741, 1743, 2044, 2249
BspQI	GCTCTTC	2 cut(s)	1362, 2055
BspT107I	GGYRCC	1 cut(s)	2240
BspTI	CTTAAG	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	473
BsrDI	GCAATG	2 cut(s)	663, 2281
BsrI	ACTGG	6 cut(s)	247, 1259, 1287, 1909, 2244, 2262
BssECI	CCNNGG	4 cut(s)	710, 1334, 1724, 1731
BssSI	CACGAG	1 cut(s)	1151
BssT1I	CCWWGG	2 cut(s)	1724, 1731
Bst2BI	CACGAG	1 cut(s)	1151
Bst2UI	CCWGG	2 cut(s)	1707, 2031
Bst4CI	ACNGT	9 cut(s)	285, 385, 469, 669, 1485, 1559, 1625, 1757, 2291
Bst6I	CTCTTC	4 cut(s)	1239, 1362, 1688, 2055
BstAFI	CTTAAG	1 cut(s)	41
BstAPI	GCANNNNNTGC	2 cut(s)	1139, 1496
BstC8I	GCNNGC	6 cut(s)	197, 201, 1497, 1501, 1517, 2161
BstDEI	CTNAG	7 cut(s)	12, 694, 716, 954, 1351, 1668, 2021
BstDSI	CCRYGG	1 cut(s)	710
BstEII	GGTNACC	1 cut(s)	1013
BstF5I	GGATG	7 cut(s)	264, 337, 857, 949, 1096, 1430, 1782
BstMAI	GTCTC	3 cut(s)	391, 473, 1301
BstMWI	GCNNNNNNNGC	7 cut(s)	1139, 1496, 1640, 1649, 1800, 1882, 2230
BstNI	CCWGG	2 cut(s)	1707, 2031
BstNSI	RCATGY	5 cut(s)	199, 613, 1519, 1868, 2189
BstPI	GGTNACC	1 cut(s)	1013
BstSCI	CCNGG	4 cut(s)	474, 1334, 1705, 2029
BstSFI	CTRYAG	4 cut(s)	390, 672, 891, 1621
BstV1I	GCAGC	7 cut(s)	686, 833, 855, 952, 1262, 1270, 1753
BstV2I	GAAGAC	1 cut(s)	1428
BstX2I	RGATCY	3 cut(s)	1746, 1946, 2049
BstYI	RGATCY	3 cut(s)	1746, 1946, 2049
Bsu15I	ATCGAT	1 cut(s)	1611
BsuI	GTATCC	1 cut(s)	878
BsuRI	GGCC	3 cut(s)	1729, 2034, 2269
BsuTUI	ATCGAT	1 cut(s)	1611
BtgI	CCRYGG	1 cut(s)	710
BtsCI	GGATG	7 cut(s)	264, 337, 857, 949, 1096, 1430, 1782
BtsI	GCAGTG	1 cut(s)	1420
Cac8I	GCNNGC	6 cut(s)	197, 201, 1497, 1501, 1517, 2161
CaiI	CAGNNNCTG	2 cut(s)	389, 680
CciI	TCATGA	1 cut(s)	1888
Cfr13I	GGNCC	6 cut(s)	1529, 1728, 1819, 2017, 2211, 2268
ClaI	ATCGAT	1 cut(s)	1611
DdeI	CTNAG	7 cut(s)	12, 694, 716, 954, 1351, 1668, 2021
DraI	TTTAAA	2 cut(s)	126, 1377
EaeI	YGGCCR	1 cut(s)	2032
Eam1104I	CTCTTC	4 cut(s)	1239, 1362, 1688, 2055
EarI	CTCTTC	4 cut(s)	1239, 1362, 1688, 2055
Eco130I	CCWWGG	2 cut(s)	1724, 1731
Eco31I	GGTCTC	1 cut(s)	473
Eco47I	GGWCC	4 cut(s)	1529, 1819, 2017, 2211
Eco57I	CTGAAG	2 cut(s)	1026, 2213
Eco88I	CYCGRG	1 cut(s)	2078
Eco91I	GGTNACC	1 cut(s)	1013
EcoO109I	RGGNCCY	2 cut(s)	1529, 2017
EcoO65I	GGTNACC	1 cut(s)	1013
EcoRI	GAATTC	1 cut(s)	289
EcoRII	CCWGG	2 cut(s)	1705, 2029
EcoT14I	CCWWGG	2 cut(s)	1724, 1731
EcoT22I	ATGCAT	3 cut(s)	264, 1135, 1521
ErhI	CCWWGG	2 cut(s)	1724, 1731
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FaqI	GGGAC	3 cut(s)	1316, 1542, 2197
FauI	CCCGC	1 cut(s)	2325
FauNDI	CATATG	1 cut(s)	754
FbaI	TGATCA	3 cut(s)	27, 94, 1164
FblI	GTMKAC	1 cut(s)	2283
Fnu4HI	GCNGC	9 cut(s)	675, 844, 847, 966, 1276, 1284, 1326, 1644, 1742
FokI	GGATG	7 cut(s)	271, 344, 864, 956, 1083, 1417, 1789
Fsp4HI	GCNGC	9 cut(s)	675, 844, 847, 966, 1276, 1284, 1326, 1644, 1742
FspBI	CTAG	6 cut(s)	509, 1053, 1364, 1437, 1635, 2181
GluI	GCNGC	9 cut(s)	675, 844, 847, 966, 1276, 1284, 1326, 1644, 1742
GsaI	CCCAGC	1 cut(s)	2274
GsuI	CTGGAG	2 cut(s)	1527, 1728
HaeIII	GGCC	3 cut(s)	1729, 2034, 2269
HapII	CCGG	3 cut(s)	475, 1336, 2221
HindIII	AAGCTT	1 cut(s)	1874
HpaII	CCGG	3 cut(s)	475, 1336, 2221
HphI	GGTGA	6 cut(s)	17, 963, 1025, 1041, 1079, 2140
Hpy166II	GTNNAC	3 cut(s)	518, 2027, 2284
Hpy188I	TCNGA	9 cut(s)	99, 268, 340, 682, 775, 858, 1173, 1354, 1938
Hpy8I	GTNNAC	3 cut(s)	518, 2027, 2284
Hpy99I	CGWCG	2 cut(s)	602, 2015
HpyAV	CCTTC	3 cut(s)	1657, 2116, 2307
HpyCH4III	ACNGT	9 cut(s)	285, 385, 469, 669, 1485, 1559, 1625, 1757, 2291
HpyCH4IV	ACGT	2 cut(s)	600, 1073
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1139, 1496, 1640, 1649, 1800, 1882, 2230
HpyF3I	CTNAG	7 cut(s)	12, 694, 716, 954, 1351, 1668, 2021
HpySE526I	ACGT	2 cut(s)	600, 1073
KpnI	GGTACC	1 cut(s)	2244
Ksp22I	TGATCA	3 cut(s)	27, 94, 1164
LguI	GCTCTTC	2 cut(s)	1362, 2055
LmnI	GCTCC	1 cut(s)	1512
Lsp1109I	GCAGC	7 cut(s)	686, 833, 855, 952, 1262, 1270, 1753
LweI	GCATC	8 cut(s)	249, 259, 686, 779, 1105, 1135, 1798, 2112
MaeI	CTAG	6 cut(s)	509, 1053, 1364, 1437, 1635, 2181
MaeII	ACGT	2 cut(s)	600, 1073
MaeIII	GTNAC	7 cut(s)	55, 1013, 1047, 1402, 1855, 1955, 2188
MboII	GAAGA	9 cut(s)	139, 482, 729, 1256, 1379, 1433, 1705, 2072, 2219
MfeI	CAATTG	2 cut(s)	375, 1089
MflI	RGATCY	3 cut(s)	1746, 1946, 2049
MlsI	TGGCCA	1 cut(s)	2034
MluNI	TGGCCA	1 cut(s)	2034
MlyI	GAGTC	4 cut(s)	752, 818, 1901, 2146
MmeI	TCCRAC	3 cut(s)	423, 2282, 2286
Mox20I	TGGCCA	1 cut(s)	2034
Mph1103I	ATGCAT	3 cut(s)	264, 1135, 1521
MroXI	GAANNNNTTC	1 cut(s)	1133
MscI	TGGCCA	1 cut(s)	2034
MseI	TTAA	8 cut(s)	42, 125, 134, 572, 900, 1062, 1376, 1878
MslI	CAYNNNNRTG	2 cut(s)	267, 523
Msp20I	TGGCCA	1 cut(s)	2034
MspA1I	CMGCKG	3 cut(s)	203, 698, 846
MspCI	CTTAAG	1 cut(s)	41
MspI	CCGG	3 cut(s)	475, 1336, 2221
MspR9I	CCNGG	4 cut(s)	476, 1336, 1707, 2031
MunI	CAATTG	2 cut(s)	375, 1089
Mva1269I	GAATGC	3 cut(s)	262, 1133, 1135
MvaI	CCWGG	2 cut(s)	1707, 2031
MwoI	GCNNNNNNNGC	7 cut(s)	1139, 1496, 1640, 1649, 1800, 1882, 2230
NciI	CCSGG	2 cut(s)	476, 1336
NdeI	CATATG	1 cut(s)	754
NlaIV	GGNNCC	4 cut(s)	418, 1530, 2213, 2242
NmuCI	GTSAC	4 cut(s)	1013, 1047, 1402, 1855
NsiI	ATGCAT	3 cut(s)	264, 1135, 1521
NspI	RCATGY	5 cut(s)	199, 613, 1519, 1868, 2189
PaeI	GCATGC	2 cut(s)	199, 1519
PaeR7I	CTCGAG	1 cut(s)	2078
PagI	TCATGA	1 cut(s)	1888
PciSI	GCTCTTC	2 cut(s)	1362, 2055
PctI	GAATGC	3 cut(s)	262, 1133, 1135
PdmI	GAANNNNTTC	1 cut(s)	1133
PfeI	GAWTC	6 cut(s)	335, 395, 539, 734, 791, 1780
PflMI	CCANNNNNTGG	1 cut(s)	114
PfoI	TCCNGGA	1 cut(s)	474
PkrI	GCNGC	9 cut(s)	676, 845, 848, 967, 1277, 1285, 1327, 1645, 1743
PleI	GAGTC	4 cut(s)	752, 818, 1900, 2145
PpsI	GAGTC	4 cut(s)	752, 818, 1900, 2145
PpuMI	RGGWCCY	2 cut(s)	1529, 2017
Psp5II	RGGWCCY	2 cut(s)	1529, 2017
Psp6I	CCWGG	2 cut(s)	1705, 2029
PspEI	GGTNACC	1 cut(s)	1013
PspFI	CCCAGC	1 cut(s)	2270
PspGI	CCWGG	2 cut(s)	1705, 2029
PspN4I	GGNNCC	4 cut(s)	418, 1530, 2213, 2242
PspPI	GGNCC	6 cut(s)	1529, 1728, 1819, 2017, 2211, 2268
PspPPI	RGGWCCY	2 cut(s)	1529, 2017
PstI	CTGCAG	1 cut(s)	676
PstNI	CAGNNNCTG	2 cut(s)	389, 680
PsuI	RGATCY	3 cut(s)	1746, 1946, 2049
PvuII	CAGCTG	3 cut(s)	203, 698, 846
RseI	CAYNNNNRTG	2 cut(s)	267, 523
SapI	GCTCTTC	2 cut(s)	1362, 2055
SaqAI	TTAA	8 cut(s)	42, 125, 134, 572, 900, 1062, 1376, 1878
SatI	GCNGC	9 cut(s)	675, 844, 847, 966, 1276, 1284, 1326, 1644, 1742
Sau96I	GGNCC	6 cut(s)	1529, 1728, 1819, 2017, 2211, 2268
ScaI	AGTACT	4 cut(s)	1039, 1291, 1390, 1717
SchI	GAGTC	4 cut(s)	752, 818, 1901, 2146
ScrFI	CCNGG	4 cut(s)	476, 1336, 1707, 2031
SfaNI	GCATC	8 cut(s)	249, 259, 686, 779, 1105, 1135, 1798, 2112
SfcI	CTRYAG	4 cut(s)	390, 672, 891, 1621
Sfr274I	CTCGAG	1 cut(s)	2078
SinI	GGWCC	4 cut(s)	1529, 1819, 2017, 2211
SlaI	CTCGAG	1 cut(s)	2078
SmiMI	CAYNNNNRTG	2 cut(s)	267, 523
SmlI	CTYRAG	6 cut(s)	41, 797, 819, 1647, 1768, 2078
SmoI	CTYRAG	6 cut(s)	41, 797, 819, 1647, 1768, 2078
SphI	GCATGC	2 cut(s)	199, 1519
SsiI	CCGC	6 cut(s)	849, 1221, 1325, 1643, 1822, 2318
SspMI	CTAG	6 cut(s)	509, 1053, 1364, 1437, 1635, 2181
StyD4I	CCNGG	4 cut(s)	474, 1334, 1705, 2029
StyI	CCWWGG	2 cut(s)	1724, 1731
TaaI	ACNGT	9 cut(s)	285, 385, 469, 669, 1485, 1559, 1625, 1757, 2291
TaiI	ACGT	2 cut(s)	603, 1076
TaqI	TCGA	8 cut(s)	181, 306, 316, 626, 1611, 1720, 2013, 2079
TatI	WGTACW	8 cut(s)	515, 719, 1037, 1289, 1388, 1715, 1833, 2024
TauI	GCSGC	2 cut(s)	1328, 1646
TfiI	GAWTC	6 cut(s)	335, 395, 539, 734, 791, 1780
Tru1I	TTAA	8 cut(s)	42, 125, 134, 572, 900, 1062, 1376, 1878
Tru9I	TTAA	8 cut(s)	42, 125, 134, 572, 900, 1062, 1376, 1878
TseFI	GTSAC	4 cut(s)	1013, 1047, 1402, 1855
TseI	GCWGC	7 cut(s)	674, 843, 846, 965, 1275, 1283, 1741
Tsp45I	GTSAC	4 cut(s)	1013, 1047, 1402, 1855
Van91I	CCANNNNNTGG	1 cut(s)	114
Vha464I	CTTAAG	1 cut(s)	41
VpaK11BI	GGWCC	4 cut(s)	1529, 1819, 2017, 2211
XapI	RAATTY	3 cut(s)	103, 289, 661
XceI	RCATGY	5 cut(s)	199, 613, 1519, 1868, 2189
XcmI	CCANNNNNNNNNTGG	2 cut(s)	359, 937
XhoI	CTCGAG	1 cut(s)	2078
XmiI	GTMKAC	1 cut(s)	2283
XmnI	GAANNNNTTC	1 cut(s)	1133
XspI	CTAG	6 cut(s)	509, 1053, 1364, 1437, 1635, 2181
ZrmI	AGTACT	4 cut(s)	1039, 1291, 1390, 1717
Zsp2I	ATGCAT	3 cut(s)	264, 1135, 1521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.