Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004477

Physical Location & Seq

Genomic Coordinates Reverse (-)

61215761 .. 61219652

Gene Structure 3892 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00268060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2166 bp

ATGGGTGAAGCTGAGAAAGGTTCAGTGATCAAAGAGAGGCTTAAGGGTCTTTGTGTTACTAATGGGTGGTCTTATGGGGTTTTGTGGCGTTTTGATCAGAGAAATTTCATGTTGTTGACTATGGGAGAAGCCTCTTATGAAGAGCACATGGGAGCAGTGATTGAAAATATGCTTCCACAGGTCCACATGCTTGGAGAAGGTGTTATAGGTCAAACTGCTTTCACTGGGAAGCACCAATGGATGCATTCAGATGCTTACAATGGACAGTGGAATTCATGCAATCCTATCGAAAGTTGTCAAGATTTGTTTCAGGATGATTCCGAGTTTCGTTGCCAATTTTCCTCTGGTATAAAGACAATTGCAACAGTCTCTGTGGAATCAGGAGTAATTCAGTTTGGTTCCACTGAAAAGATTATGGAGAGGTTGGAGTTTTTAGATGAAACAAAAAGGGTGTTCCAGGAGATCAAAAATCTTCATGGGCTTATTCCTCTAGCAAGTACACCCTCATGTTTGAACAATGAATCCAATGATCTAAATGAATTGTTTGCTTCCTTAATTTCATCTGCAAACTTTCATGGCAACGTTGCCAACATACTTAGGGATAAATCGAAAGATGTAGGAGGAAATTGTTTATCTGCGATGAATTTGCAGTCTGCAGCATCTGATGACATTGGCTCAGCTGATAAAACCCCGTGGTTTAGTACATGGAACTCTGATTCTTCTTTGTTGGCTTCATATGACTCACATTTGGCATCTGATATTGGGGTTCAGGATTCTCTCAAGACTTGCAGAAATACAGCTCAAGACTCAACTCTCATTCAAGGCAGCTGTGGATATCAGATGGATAACCAGCAATATCTACATGGATACCCTGTAGAGTTTAACCGAACTGATTGTATTACAGATGTTTCCAAATCATTCATGGATGATCTTTCTCATTGGTTTGCTGCTTCACCCGAACAGAACTTCAATGGAATGGCAACCACAATGAATGGTGACCTCTCGCAAGTGTTTGAAAGTACTTCGGTGTCACCTAGTCTGCTTAAAGGTGATACGATTATCAATGTACCAGTTGAGCATCCAGCAACTTCTATGCAAAGTTCCATCACGAATGCATTCAGTGCTGATGCTCATGAGAAATCTGTGATCATTCAGAGTGCTGGAAATGATTTGTTTCATGGTCTGGGAACAGATTTCGGGTGTGGTCAAGTCAGCGATTGTTGGGAAGAGAGTATAATGCCAGTAGTTAGTGGTGGCTGCTTGGCTGCCGGTACTGATTTGACCAAAGAACCAGAATTAGCAAGGCTTGCTGGCTCTGGAGGGAGCATGCATTTGACGGGACCTTTGTATAACTTGGACAAGACAAACTGTCTTGTACCAAAGAAAGAGGTTCTCCCAAAATCACAGGTGGGCTTATGGATCGATGATAGCTACAGTGTCAATGCTAGAAGTGCGGCTCAAGCAAAACCACAGAAGGCTGAGGATCACACAAAGACCGCCAAGAAGAGGGCAAAGCCTGGAGAGAGTACTCGACCAAGGCCCAAGGATCGGCAGCAGATCCAAGACCGTATGAAAGACTTGAGGGGGATGATTCCCAATGGTGGCAAGTGTAGCATTGATGCTTTGCTGGACCGCACCATCAAGTACATGATTTTCTTACAAGGTGTGACAAAACATGCTGATAAGCTTAAACAACCTCATGAGTCAAAGCTGACTGGAAAGGAGAATGGTGTGGTTCTAAAAGATCAGAGCAGTAGATCTGGTGGTAACAATACTTGGGCGTTAGCAGTTGAGGGTCAAAATGTGGTTTGCCCTATACTCGTCGAGGACCTTAGTACACCTGGCCAAATGCTTATTGAGATCCTCTGTGAAGAGCATGGTTTCTTTCTCGAGTTAGCAGATGAAATACGGGGCTTCGGGTTGAATATCTTGAATGGGGTGATGGAGAGTCGGGAGGATAAGATATGGGCACGCTTTATCGTTGAGGCAACTAGGCATGTAACCAGAATAGAAGTGTTTTGGTCCCTTGTCCGGCTTCTTCAGCAAAGTGGTACCAGTGTGGTTGATCCAACCAGTCGGCCCAGCAATGTAGTAGACAACTGTTTTCCTCCTGTGTTGGATAGTTTCCCGCCGCGTAGTTTTCCTCCTCCCATCAGCTTGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0003674 GO:0003700 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007140 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010154 GO:0010468 GO:0010556 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048232 GO:0048285 GO:0048316 GO:0048364 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051321 GO:0051704 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0090058 GO:0099402 GO:0140013 GO:0140096 GO:0140110 GO:1901564 GO:1903046 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bHLH-MYC_N

Protein Analysis

721

Amino Acids

79.19

Weight (kDa)

5.2

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	57 - 152	5.4e-17	bHLH-MYC and R2R3-MYB transcription factors N-terminal
bHLH_LHW	PF23176	511 - 571	1e-28	Transcription factor LHW bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64625 AT1G64625 AT1G64625 AT1G64625 AT5G24352 AT5G24352
fragaria_vesca	FvH4_4g16070 FvH4_4g16070 FvH4_4g16070 FvH4_5g11300 FvH4_5g11300 FvH4_5g11300 FvH4_5g11300 FvH4_5g11300
malus_domestica	MD06G1114400.v1.1 MD14G1135600.v1.1
prunus_persica	Prupe.5G127100_v2.0.a1
pyrus_communis	pycom06g10710 pycom14g10880 pycom14g10890
rosa_chinensis	RchiOBHm_Chr7g0186541
rosa_laevigata	RLG00000004836
rosa_multiflora	Rmu_sc0000645.1_g000021
rosa_roxburghii	Rroxscaffold_3G00268060
rosa_rugosa	Rorug06G0475000 Rorug06G0475000
rosa_samantha	Rh7AG066100 Rh7BG082000 Rh7CG081700 Rh7DG082700
rosa_wichuraiana	Rw7G006870 Rw7G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	2051
AccB1I	GGYRCC	1 cut(s)	2051
AccI	GTMKAC	1 cut(s)	2094
AccII	CGCG	1 cut(s)	2134
AciI	CCGC	5 cut(s)	1454, 1497, 1633, 2129, 2132
AclI	AACGTT	1 cut(s)	582
AclWI	GGATC	6 cut(s)	1427, 1491, 1552, 1554, 1855, 2060
AcoI	YGGCCR	1 cut(s)	1843
AcsI	RAATTY	3 cut(s)	103, 271, 643
AcuI	CTGAAG	1 cut(s)	2024
AfiI	CCNNNNNNNGG	4 cut(s)	1506, 1548, 1601, 2031
AflII	CTTAAG	1 cut(s)	41
AgsI	TTSAA	7 cut(s)	164, 514, 821, 970, 1016, 1924, 1933
AhdI	GACNNNNNGTC	1 cut(s)	1368
AjnI	CCWGG	3 cut(s)	456, 1516, 1840
AloI	GAACNNNNNNTCC	2 cut(s)	506, 538
AluBI	AGCT	8 cut(s)	11, 680, 800, 828, 1431, 1687, 1711, 2157
AluI	AGCT	8 cut(s)	11, 680, 800, 828, 1431, 1687, 1711, 2157
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	1 cut(s)	373
AlwI	GGATC	6 cut(s)	1427, 1491, 1552, 1554, 1855, 2060
AlwNI	CAGNNNCTG	2 cut(s)	371, 662
Ama87I	CYCGRG	1 cut(s)	1889
AoxI	GGCC	3 cut(s)	1538, 1843, 2078
ApeKI	GCWGC	6 cut(s)	656, 825, 947, 1257, 1265, 1552
ApoI	RAATTY	3 cut(s)	103, 271, 643
ArsI	GACNNNNNNTTYG	2 cut(s)	1327, 1359
Asp700I	GAANNNNTTC	1 cut(s)	1115
Asp718I	GGTACC	1 cut(s)	2051
AspS9I	GGNCC	7 cut(s)	181, 1340, 1539, 1630, 1828, 2022, 2079
AsuHPI	GGTGA	6 cut(s)	17, 945, 1007, 1023, 1061, 1951
AvaI	CYCGRG	1 cut(s)	1889
AvaII	GGWCC	5 cut(s)	181, 1340, 1630, 1828, 2022
BaeGI	GKGCMC	1 cut(s)	1972
BaeI	ACNNNNGTAYC	2 cut(s)	2043, 2076
BalI	TGGCCA	1 cut(s)	1845
BanI	GGYRCC	1 cut(s)	2051
Bbv12I	GWGCWC	1 cut(s)	147
BbvCI	CCTCAGC	1 cut(s)	1479
BbvI	GCAGC	6 cut(s)	668, 837, 934, 1244, 1252, 1564
BccI	CCATC	5 cut(s)	835, 1112, 1646, 1936, 2159
BcgI	CGANNNNNNTGC	4 cut(s)	268, 302, 628, 662
BciT130I	CCWGG	3 cut(s)	458, 1518, 1842
BciVI	GTATCC	1 cut(s)	860
BclI	TGATCA	3 cut(s)	27, 94, 1146
BcoDI	GTCTC	1 cut(s)	373
BfaI	CTAG	4 cut(s)	491, 1035, 1446, 1992
BfmI	CTRYAG	3 cut(s)	654, 873, 1432
BfrI	CTTAAG	1 cut(s)	41
BfuI	GTATCC	1 cut(s)	860
BglII	AGATCT	1 cut(s)	1757
BisI	GCNGC	8 cut(s)	657, 826, 948, 1258, 1266, 1455, 1553, 2132
BlpI	GCTNAGC	1 cut(s)	676
BlsI	GCNGC	8 cut(s)	658, 827, 949, 1259, 1267, 1456, 1554, 2133
BmcAI	AGTACT	2 cut(s)	1021, 1528
Bme1390I	CCNGG	3 cut(s)	458, 1518, 1842
Bme18I	GGWCC	5 cut(s)	181, 1340, 1630, 1828, 2022
BmeRI	GACNNNNNGTC	1 cut(s)	1368
BmeT110I	CYCGRG	1 cut(s)	1889
BmgT120I	GGNCC	7 cut(s)	181, 1340, 1539, 1630, 1828, 2022, 2079
BmiI	GGNNCC	4 cut(s)	400, 1341, 2024, 2053
BmrFI	CCNGG	3 cut(s)	458, 1518, 1842
BmrI	ACTGGG	1 cut(s)	234
BmsI	GCATC	7 cut(s)	231, 241, 668, 761, 1087, 1117, 1609
BmuI	ACTGGG	1 cut(s)	234
BpmI	CTGGAG	2 cut(s)	1338, 1539
Bpu10I	CCTNAGC	1 cut(s)	1479
Bpu1102I	GCTNAGC	1 cut(s)	676
BpuEI	CTTGAG	4 cut(s)	764, 786, 1443, 1600
Bsa29I	ATCGAT	1 cut(s)	1422
BsaJI	CCNNGG	3 cut(s)	692, 1535, 1542
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bsc4I	CCNNNNNNNGG	4 cut(s)	1506, 1548, 1601, 2031
Bse118I	RCCGGY	1 cut(s)	1268
Bse1I	ACTGG	6 cut(s)	229, 1070, 1241, 1720, 2055, 2073
Bse3DI	GCAATG	1 cut(s)	2092
BseBI	CCWGG	3 cut(s)	458, 1518, 1842
BseCI	ATCGAT	1 cut(s)	1422
BseDI	CCNNGG	3 cut(s)	692, 1535, 1542
BseGI	GGATG	5 cut(s)	246, 319, 931, 1078, 1593
BseLI	CCNNNNNNNGG	4 cut(s)	1506, 1548, 1601, 2031
BseMI	GCAATG	1 cut(s)	2092
BseMII	CTCAG	2 cut(s)	690, 1470
BseNI	ACTGG	6 cut(s)	229, 1070, 1241, 1720, 2055, 2073
BseRI	GAGGAG	1 cut(s)	2136
BseSI	GKGCMC	1 cut(s)	1972
BseXI	GCAGC	6 cut(s)	668, 837, 934, 1244, 1252, 1564
BseYI	CCCAGC	1 cut(s)	2081
Bsh1236I	CGCG	1 cut(s)	2134
BshFI	GGCC	3 cut(s)	1540, 1845, 2080
BshNI	GGYRCC	1 cut(s)	2051
BshVI	ATCGAT	1 cut(s)	1422
BsiHKAI	GWGCWC	1 cut(s)	147
BsiHKCI	CYCGRG	1 cut(s)	1889
BsiSI	CCGG	2 cut(s)	1269, 2032
BslFI	GGGAC	2 cut(s)	1353, 2008
BslI	CCNNNNNNNGG	4 cut(s)	1506, 1548, 1601, 2031
BsmAI	GTCTC	1 cut(s)	373
BsmFI	GGGAC	2 cut(s)	1353, 2008
BsmI	GAATGC	3 cut(s)	244, 1115, 1117
BsnI	GGCC	3 cut(s)	1540, 1845, 2080
BsoBI	CYCGRG	1 cut(s)	1889
Bsp1286I	GDGCHC	2 cut(s)	147, 1972
Bsp1720I	GCTNAGC	1 cut(s)	676
BspACI	CCGC	5 cut(s)	1454, 1497, 1633, 2129, 2132
BspANI	GGCC	3 cut(s)	1540, 1845, 2080
BspCNI	CTCAG	3 cut(s)	4, 689, 1471
BspDI	ATCGAT	1 cut(s)	1422
BspFNI	CGCG	1 cut(s)	2134
BspHI	TCATGA	2 cut(s)	1132, 1699
BspLI	GGNNCC	4 cut(s)	400, 1341, 2024, 2053
BspMAI	CTGCAG	1 cut(s)	658
BspPI	GGATC	6 cut(s)	1427, 1491, 1552, 1554, 1855, 2060
BspQI	GCTCTTC	2 cut(s)	135, 1866
BspT107I	GGYRCC	1 cut(s)	2051
BspTI	CTTAAG	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	2092
BsrFI	RCCGGY	1 cut(s)	1268
BsrI	ACTGG	6 cut(s)	229, 1070, 1241, 1720, 2055, 2073
BssAI	RCCGGY	1 cut(s)	1268
BssECI	CCNNGG	3 cut(s)	692, 1535, 1542
BssT1I	CCWWGG	2 cut(s)	1535, 1542
Bst2UI	CCWGG	3 cut(s)	458, 1518, 1842
Bst4CI	ACNGT	6 cut(s)	267, 367, 1370, 1436, 1568, 2102
Bst6I	CTCTTC	4 cut(s)	135, 1221, 1499, 1866
BstAFI	CTTAAG	1 cut(s)	41
BstAPI	GCANNNNNTGC	2 cut(s)	1121, 1307
BstC8I	GCNNGC	4 cut(s)	1308, 1312, 1328, 1972
BstDEI	CTNAG	5 cut(s)	12, 596, 676, 1479, 1832
BstDSI	CCRYGG	1 cut(s)	692
BstEII	GGTNACC	1 cut(s)	995
BstF5I	GGATG	5 cut(s)	246, 319, 931, 1078, 1593
BstFNI	CGCG	1 cut(s)	2134
BstMAI	GTCTC	1 cut(s)	373
BstMWI	GCNNNNNNNGC	6 cut(s)	1121, 1307, 1451, 1460, 1611, 2041
BstNI	CCWGG	3 cut(s)	458, 1518, 1842
BstNSI	RCATGY	4 cut(s)	190, 1330, 1679, 2000
BstPI	GGTNACC	1 cut(s)	995
BstSCI	CCNGG	3 cut(s)	456, 1516, 1840
BstSFI	CTRYAG	3 cut(s)	654, 873, 1432
BstSLI	GKGCMC	1 cut(s)	1972
BstUI	CGCG	1 cut(s)	2134
BstV1I	GCAGC	6 cut(s)	668, 837, 934, 1244, 1252, 1564
BstX2I	RGATCY	3 cut(s)	1557, 1757, 1860
BstXI	CCANNNNNNTGG	1 cut(s)	191
BstYI	RGATCY	3 cut(s)	1557, 1757, 1860
Bsu15I	ATCGAT	1 cut(s)	1422
BsuI	GTATCC	1 cut(s)	860
BsuRI	GGCC	3 cut(s)	1540, 1845, 2080
BsuTUI	ATCGAT	1 cut(s)	1422
BtgI	CCRYGG	1 cut(s)	692
BtgZI	GCGATG	1 cut(s)	653
BtsCI	GGATG	5 cut(s)	246, 319, 931, 1078, 1593
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	8 cut(s)	30, 162, 222, 272, 402, 1126, 1441, 2062
Cac8I	GCNNGC	4 cut(s)	1308, 1312, 1328, 1972
CaiI	CAGNNNCTG	2 cut(s)	371, 662
CciI	TCATGA	2 cut(s)	1132, 1699
Cfr10I	RCCGGY	1 cut(s)	1268
Cfr13I	GGNCC	7 cut(s)	181, 1340, 1539, 1630, 1828, 2022, 2079
ClaI	ATCGAT	1 cut(s)	1422
DdeI	CTNAG	5 cut(s)	12, 596, 676, 1479, 1832
DriI	GACNNNNNGTC	1 cut(s)	1368
EaeI	YGGCCR	1 cut(s)	1843
Eam1104I	CTCTTC	4 cut(s)	135, 1221, 1499, 1866
Eam1105I	GACNNNNNGTC	1 cut(s)	1368
EarI	CTCTTC	4 cut(s)	135, 1221, 1499, 1866
Eco130I	CCWWGG	2 cut(s)	1535, 1542
Eco32I	GATATC	1 cut(s)	836
Eco47I	GGWCC	5 cut(s)	181, 1340, 1630, 1828, 2022
Eco57I	CTGAAG	1 cut(s)	2024
Eco88I	CYCGRG	1 cut(s)	1889
Eco91I	GGTNACC	1 cut(s)	995
EcoO109I	RGGNCCY	2 cut(s)	1340, 1828
EcoO65I	GGTNACC	1 cut(s)	995
EcoRI	GAATTC	1 cut(s)	271
EcoRII	CCWGG	3 cut(s)	456, 1516, 1840
EcoRV	GATATC	1 cut(s)	836
EcoT14I	CCWWGG	2 cut(s)	1535, 1542
EcoT22I	ATGCAT	3 cut(s)	246, 1117, 1332
ErhI	CCWWGG	2 cut(s)	1535, 1542
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FaqI	GGGAC	2 cut(s)	1353, 2008
FauI	CCCGC	1 cut(s)	2136
FauNDI	CATATG	1 cut(s)	736
FbaI	TGATCA	3 cut(s)	27, 94, 1146
FblI	GTMKAC	1 cut(s)	2094
Fnu4HI	GCNGC	8 cut(s)	657, 826, 948, 1258, 1266, 1455, 1553, 2132
FokI	GGATG	5 cut(s)	253, 326, 938, 1065, 1600
Fsp4HI	GCNGC	8 cut(s)	657, 826, 948, 1258, 1266, 1455, 1553, 2132
FspBI	CTAG	4 cut(s)	491, 1035, 1446, 1992
GluI	GCNGC	8 cut(s)	657, 826, 948, 1258, 1266, 1455, 1553, 2132
GsaI	CCCAGC	1 cut(s)	2085
GsuI	CTGGAG	2 cut(s)	1338, 1539
HaeIII	GGCC	3 cut(s)	1540, 1845, 2080
HapII	CCGG	2 cut(s)	1269, 2032
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HindIII	AAGCTT	1 cut(s)	1685
HpaII	CCGG	2 cut(s)	1269, 2032
HphI	GGTGA	6 cut(s)	17, 945, 1007, 1023, 1061, 1951
Hpy166II	GTNNAC	5 cut(s)	117, 184, 500, 1838, 2095
Hpy188I	TCNGA	9 cut(s)	99, 250, 322, 664, 715, 757, 840, 1155, 1749
Hpy8I	GTNNAC	5 cut(s)	117, 184, 500, 1838, 2095
Hpy99I	CGWCG	1 cut(s)	1826
HpyAV	CCTTC	2 cut(s)	191, 1468
HpyCH4III	ACNGT	6 cut(s)	267, 367, 1370, 1436, 1568, 2102
HpyCH4IV	ACGT	1 cut(s)	582
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1121, 1307, 1451, 1460, 1611, 2041
HpyF3I	CTNAG	5 cut(s)	12, 596, 676, 1479, 1832
HpySE526I	ACGT	1 cut(s)	582
KpnI	GGTACC	1 cut(s)	2055
Ksp22I	TGATCA	3 cut(s)	27, 94, 1146
LguI	GCTCTTC	2 cut(s)	135, 1866
LmnI	GCTCC	2 cut(s)	152, 1323
Lsp1109I	GCAGC	6 cut(s)	668, 837, 934, 1244, 1252, 1564
LweI	GCATC	7 cut(s)	231, 241, 668, 761, 1087, 1117, 1609
MaeI	CTAG	4 cut(s)	491, 1035, 1446, 1992
MaeII	ACGT	1 cut(s)	582
MaeIII	GTNAC	6 cut(s)	55, 995, 1029, 1666, 1766, 1999
MboII	GAAGA	7 cut(s)	152, 464, 711, 1238, 1516, 1883, 2030
MfeI	CAATTG	1 cut(s)	357
MflI	RGATCY	3 cut(s)	1557, 1757, 1860
MhlI	GDGCHC	2 cut(s)	147, 1972
MlsI	TGGCCA	1 cut(s)	1845
MluNI	TGGCCA	1 cut(s)	1845
MlyI	GAGTC	4 cut(s)	734, 800, 1712, 1957
MmeI	TCCRAC	3 cut(s)	405, 2093, 2097
Mox20I	TGGCCA	1 cut(s)	1845
Mph1103I	ATGCAT	3 cut(s)	246, 1117, 1332
MroXI	GAANNNNTTC	1 cut(s)	1115
MscI	TGGCCA	1 cut(s)	1845
MseI	TTAA	5 cut(s)	42, 554, 882, 1044, 1689
MslI	CAYNNNNRTG	2 cut(s)	249, 505
Msp20I	TGGCCA	1 cut(s)	1845
MspA1I	CMGCKG	2 cut(s)	680, 828
MspCI	CTTAAG	1 cut(s)	41
MspI	CCGG	2 cut(s)	1269, 2032
MspR9I	CCNGG	3 cut(s)	458, 1518, 1842
MunI	CAATTG	1 cut(s)	357
Mva1269I	GAATGC	3 cut(s)	244, 1115, 1117
MvaI	CCWGG	3 cut(s)	458, 1518, 1842
MvnI	CGCG	1 cut(s)	2134
MwoI	GCNNNNNNNGC	6 cut(s)	1121, 1307, 1451, 1460, 1611, 2041
NdeI	CATATG	1 cut(s)	736
NlaIV	GGNNCC	4 cut(s)	400, 1341, 2024, 2053
NmuCI	GTSAC	3 cut(s)	995, 1029, 1666
NsiI	ATGCAT	3 cut(s)	246, 1117, 1332
NspI	RCATGY	4 cut(s)	190, 1330, 1679, 2000
PaeI	GCATGC	1 cut(s)	1330
PaeR7I	CTCGAG	1 cut(s)	1889
PagI	TCATGA	2 cut(s)	1132, 1699
PciSI	GCTCTTC	2 cut(s)	135, 1866
PctI	GAATGC	3 cut(s)	244, 1115, 1117
PdmI	GAANNNNTTC	1 cut(s)	1115
PfeI	GAWTC	6 cut(s)	317, 377, 521, 716, 773, 1591
PfoI	TCCNGGA	1 cut(s)	456
PkrI	GCNGC	8 cut(s)	658, 827, 949, 1259, 1267, 1456, 1554, 2133
PleI	GAGTC	4 cut(s)	734, 800, 1711, 1956
PpsI	GAGTC	4 cut(s)	734, 800, 1711, 1956
PpuMI	RGGWCCY	2 cut(s)	1340, 1828
Psp1406I	AACGTT	1 cut(s)	582
Psp5II	RGGWCCY	2 cut(s)	1340, 1828
Psp6I	CCWGG	3 cut(s)	456, 1516, 1840
PspEI	GGTNACC	1 cut(s)	995
PspFI	CCCAGC	1 cut(s)	2081
PspGI	CCWGG	3 cut(s)	456, 1516, 1840
PspN4I	GGNNCC	4 cut(s)	400, 1341, 2024, 2053
PspPI	GGNCC	7 cut(s)	181, 1340, 1539, 1630, 1828, 2022, 2079
PspPPI	RGGWCCY	2 cut(s)	1340, 1828
PstI	CTGCAG	1 cut(s)	658
PstNI	CAGNNNCTG	2 cut(s)	371, 662
PsuI	RGATCY	3 cut(s)	1557, 1757, 1860
PvuII	CAGCTG	2 cut(s)	680, 828
RseI	CAYNNNNRTG	2 cut(s)	249, 505
SapI	GCTCTTC	2 cut(s)	135, 1866
SaqAI	TTAA	5 cut(s)	42, 554, 882, 1044, 1689
SatI	GCNGC	8 cut(s)	657, 826, 948, 1258, 1266, 1455, 1553, 2132
Sau96I	GGNCC	7 cut(s)	181, 1340, 1539, 1630, 1828, 2022, 2079
ScaI	AGTACT	2 cut(s)	1021, 1528
SchI	GAGTC	4 cut(s)	734, 800, 1712, 1957
ScrFI	CCNGG	3 cut(s)	458, 1518, 1842
SduI	GDGCHC	2 cut(s)	147, 1972
SfaNI	GCATC	7 cut(s)	231, 241, 668, 761, 1087, 1117, 1609
SfcI	CTRYAG	3 cut(s)	654, 873, 1432
Sfr274I	CTCGAG	1 cut(s)	1889
SinI	GGWCC	5 cut(s)	181, 1340, 1630, 1828, 2022
SlaI	CTCGAG	1 cut(s)	1889
SmiMI	CAYNNNNRTG	2 cut(s)	249, 505
SmlI	CTYRAG	6 cut(s)	41, 779, 801, 1458, 1579, 1889
SmoI	CTYRAG	6 cut(s)	41, 779, 801, 1458, 1579, 1889
SphI	GCATGC	1 cut(s)	1330
SsiI	CCGC	5 cut(s)	1454, 1497, 1633, 2129, 2132
SspMI	CTAG	4 cut(s)	491, 1035, 1446, 1992
StyD4I	CCNGG	3 cut(s)	456, 1516, 1840
StyI	CCWWGG	2 cut(s)	1535, 1542
TaaI	ACNGT	6 cut(s)	267, 367, 1370, 1436, 1568, 2102
TaiI	ACGT	1 cut(s)	585
TaqI	TCGA	6 cut(s)	288, 608, 1422, 1531, 1824, 1890
TatI	WGTACW	6 cut(s)	497, 701, 1019, 1526, 1644, 1835
TauI	GCSGC	2 cut(s)	1457, 2134
TfiI	GAWTC	6 cut(s)	317, 377, 521, 716, 773, 1591
Tru1I	TTAA	5 cut(s)	42, 554, 882, 1044, 1689
Tru9I	TTAA	5 cut(s)	42, 554, 882, 1044, 1689
TscAI	CASTG	8 cut(s)	30, 162, 229, 272, 409, 1126, 1441, 2062
TseFI	GTSAC	3 cut(s)	995, 1029, 1666
TseI	GCWGC	6 cut(s)	656, 825, 947, 1257, 1265, 1552
Tsp45I	GTSAC	3 cut(s)	995, 1029, 1666
TspRI	CASTG	8 cut(s)	30, 162, 229, 272, 409, 1126, 1441, 2062
Vha464I	CTTAAG	1 cut(s)	41
VpaK11BI	GGWCC	5 cut(s)	181, 1340, 1630, 1828, 2022
XapI	RAATTY	3 cut(s)	103, 271, 643
XceI	RCATGY	4 cut(s)	190, 1330, 1679, 2000
XcmI	CCANNNNNNNNNTGG	2 cut(s)	341, 919
XhoI	CTCGAG	1 cut(s)	1889
XmiI	GTMKAC	1 cut(s)	2094
XmnI	GAANNNNTTC	1 cut(s)	1115
XspI	CTAG	4 cut(s)	491, 1035, 1446, 1992
ZrmI	AGTACT	2 cut(s)	1021, 1528
Zsp2I	ATGCAT	3 cut(s)	246, 1117, 1332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.