Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002109

Physical Location & Seq

Genomic Coordinates Reverse (-)

24139851 .. 24146281

Gene Structure 6431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G64990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGAGTTACGGATGGGCGATATACGAAGGCACGGTGGTGATAGCTTCACTAAGTCTCTTAGGATGGGCAGGTTTATGGTTTCTTAATCGGAGATTATACAAAGAGTATGAAGAGAAACGAGCTTTGGTTCAAATCATTTTCAGTGTCGTCTTCGCTTTCTCTTGTAATCTATTGCAGCTCGTTTTGTTCGAGATCATACCTGTTCTCTCTAGAGAGGCAAGGATGATAAACTGGAAGGTGGATCTTTTTTGTTTGATACTTCTTCTGGTTTTCATGTTGCCGTATTACCATTGCTATTTGATGCTTCGTAATAGTGGTGTAAGAAGGGAGCGTGCCTCTGTTGGGGCTTTCTTATTCTTGTCAGCATTCCTTTACGCATTCTGGCGTATGGGAGTTCATTTCCCTATGCCTTCAGCAGATAAAGGGTTTTTTACCATGCCTCAGCTGGTCAGTAGAATTGGGGTCATTGGTGTGACCTTAATGGCTGTCTTATCAGGATTTGGAGCTGTAAATTTACCCTACAGCTATATATCCCTCTTCATTAGGGAGATTGAAGAAGCAGATATAATATCTTTGGAAAGGCAACTGATTCAGTCAACTGAGACGTGCATAGCAAAGAAGAAGAAAATTATTTTGTGTCAATTGGAGGTGGAACGAAATCAAGGATCAGAAGAGAATCAGAAACGTAGCTCTTTCTTCAGAAGAATTGTTGGGACTGTTGTGCGGTCGGTTCAAGATGACCAAAAGGAACAAGACATAAAAATATTGGAAGCGGAGGTGGAAGCCTTAGAGGAGCTGTCAAAACAGTTATTTTTGGAAGTATATGAGCTGCGTCAAGCAAAGGATGCTGCTGCTTATTCTAGAACTTGGAAGGGTCATGTGCAGAACTTACTTGGTTATGCATGTTCCATTTATTGTGTGTATAAAATGTTGAAGTCTCTTCAAAGTGTTGTCTTCAAAGAGGCCGGTACAAAAGATCCTGTCACGACGATGATCAGCATATTCTTGCGGTTGTTTGATATAGGAGTAGATGCTGCACTCCTCTCACAGTATATATCCCTGCTGTTCATTGGGATGTTGATTGTGATTTCTGTGAGGGGATTCCTGACGAACCTGATGAAGTTTTTCTTTGCTGTCTCAAGAGTGGGAAGTGGGTCTTCAAGCAATGTTGTACTTTTCCTATCTGAAATCATGGGAATGTACTTTTTGTCTTCAATTCTTCTTATCAGAAAAAGCTTGAGAAATGAGTACAGGGGAATCATAACAGATGTGTTGGGTGGAGATATTCAGTTTGATTTCTATCATCGATGGTTTGATGCAATTTTTGTGGCGAGTGCTTTTCTTTCTCTCGTTTTGCTTTCTGCACATTACACGTCTCGTCAATCTGATAAGCACGCCATCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001101 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006950 GO:0007275 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010228 GO:0010427 GO:0012505 GO:0016020 GO:0017076 GO:0019001 GO:0019840 GO:0019899 GO:0022414 GO:0031406 GO:0031984 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033293 GO:0033554 GO:0033993 GO:0035639 GO:0036094 GO:0042175 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051020 GO:0051716 GO:0061458 GO:0070417 GO:0071944 GO:0097159 GO:0097305 GO:0097367 GO:0098827 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABA_GPCR GPHR_N

Protein Analysis

468

Amino Acids

53.55

Weight (kDa)

8.79

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GPHR_N	PF12537	143 - 210	1.4e-23	The Golgi pH Regulator (GPHR) Family N-terminal
ABA_GPCR	PF12430	286 - 456	6.2e-44	Abscisic acid G-protein coupled receptor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64990 AT1G64990 AT4G27630 AT4G27630 AT4G27630 AT4G27630 AT4G27630 AT4G27630
fragaria_vesca	FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230
malus_domestica	MD01G1239200.v1.1 MD07G1310900.v1.1
prunus_persica	Prupe.2G329100_v2.0.a1 Prupe.2G329100_v2.0.a1 Prupe.2G329100_v2.0.a1
pyrus_communis	pycom01g24650 pycom07g28320
rosa_chinensis	RchiOBHm_Chr1g0384591
rosa_laevigata	RLG00000026029
rosa_multiflora	Rmu_co8335957.1_g000001 Rmu_sc0006005.1_g000017
rosa_roxburghii	Rroxscaffold_4G00276560
rosa_rugosa	Rorug01G0449600 Rorug01G0449700 Rorug01G0449800 Rorug01G0449900 Rorug01G0450000
rosa_samantha	Rh1AG474400 Rh1BG432400 Rh1CG445600 Rh1DG465100
rosa_wichuraiana	Rw1G039820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	59
AciI	CCGC	3 cut(s)	724, 773, 1009
AclWI	GGATC	3 cut(s)	249, 673, 971
AcsI	RAATTY	1 cut(s)	511
AcuI	CTGAAG	2 cut(s)	396, 682
AfaI	GTAC	4 cut(s)	970, 1173, 1202, 1250
AfiI	CCNNNNNNNGG	1 cut(s)	342
AflIII	ACRYGT	1 cut(s)	1371
AgsI	TTSAA	8 cut(s)	131, 554, 734, 934, 944, 958, 1161, 1215
AjiI	CACGTC	2 cut(s)	606, 1374
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AleI	CACNNNNGTG	1 cut(s)	35
Alw26I	GTCTC	5 cut(s)	59, 596, 942, 1141, 1380
AlwI	GGATC	3 cut(s)	249, 673, 971
AoxI	GGCC	1 cut(s)	963
ApeKI	GCWGC	5 cut(s)	175, 829, 848, 851, 1034
ApoI	RAATTY	1 cut(s)	511
Asp700I	GAANNNNTTC	1 cut(s)	1124
AsuHPI	GGTGA	1 cut(s)	49
BbsI	GAAGAC	4 cut(s)	142, 946, 1149, 1203
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	5 cut(s)	187, 816, 835, 838, 1021
BccI	CCATC	4 cut(s)	6, 57, 1302, 1406
BceAI	ACGGC	1 cut(s)	265
BclI	TGATCA	1 cut(s)	993
BcoDI	GTCTC	5 cut(s)	59, 596, 942, 1141, 1380
BfaI	CTAG	2 cut(s)	210, 861
BfmI	CTRYAG	1 cut(s)	520
BfuAI	ACCTGC	1 cut(s)	59
BisI	GCNGC	5 cut(s)	176, 830, 849, 852, 1035
BlsI	GCNGC	5 cut(s)	177, 831, 850, 853, 1036
BmgBI	CACGTC	2 cut(s)	606, 1374
BmsI	GCATC	4 cut(s)	291, 835, 1021, 1306
BpiI	GAAGAC	4 cut(s)	142, 946, 1149, 1203
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
Bpu10I	CCTNAGC	1 cut(s)	441
BpuEI	CTTGAG	2 cut(s)	1123, 1258
Bsa29I	ATCGAT	1 cut(s)	1306
BsaBI	GATNNNNATC	1 cut(s)	1299
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse118I	RCCGGY	1 cut(s)	965
Bse1I	ACTGG	1 cut(s)	236
Bse3DI	GCAATG	2 cut(s)	289, 1171
Bse8I	GATNNNNATC	1 cut(s)	1299
BseCI	ATCGAT	1 cut(s)	1306
BseGI	GGATG	5 cut(s)	17, 68, 228, 850, 1080
BseJI	GATNNNNATC	1 cut(s)	1299
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMI	GCAATG	2 cut(s)	289, 1171
BseMII	CTCAG	2 cut(s)	455, 591
BseNI	ACTGG	1 cut(s)	236
BseRI	GAGGAG	2 cut(s)	806, 1031
BseXI	GCAGC	5 cut(s)	187, 816, 835, 838, 1021
BsgI	GTGCAG	3 cut(s)	902, 1020, 1347
Bsh1285I	CGRYCG	1 cut(s)	728
BshFI	GGCC	1 cut(s)	965
BshVI	ATCGAT	1 cut(s)	1306
BsiEI	CGRYCG	1 cut(s)	728
BsiSI	CCGG	1 cut(s)	966
BslFI	GGGAC	1 cut(s)	727
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmAI	GTCTC	5 cut(s)	59, 596, 942, 1141, 1380
BsmBI	CGTCTC	2 cut(s)	596, 1380
BsmFI	GGGAC	1 cut(s)	727
BsmI	GAATGC	2 cut(s)	365, 377
BsnI	GGCC	1 cut(s)	965
Bsp143I	GATC	5 cut(s)	192, 241, 665, 976, 993
BspACI	CCGC	3 cut(s)	724, 773, 1009
BspANI	GGCC	1 cut(s)	965
BspCNI	CTCAG	2 cut(s)	454, 592
BspDI	ATCGAT	1 cut(s)	1306
BspMI	ACCTGC	1 cut(s)	59
BspPI	GGATC	3 cut(s)	249, 673, 971
BsrDI	GCAATG	2 cut(s)	289, 1171
BsrFI	RCCGGY	1 cut(s)	965
BsrI	ACTGG	1 cut(s)	236
BssAI	RCCGGY	1 cut(s)	965
BssMI	GATC	5 cut(s)	192, 241, 665, 976, 993
Bst4CI	ACNGT	4 cut(s)	34, 718, 807, 1050
Bst6I	CTCTTC	4 cut(s)	105, 542, 666, 945
BstAPI	GCANNNNNTGC	1 cut(s)	845
BstC8I	GCNNGC	2 cut(s)	333, 1395
BstDEI	CTNAG	5 cut(s)	50, 58, 441, 600, 787
BstF5I	GGATG	5 cut(s)	17, 68, 228, 850, 1080
BstKTI	GATC	5 cut(s)	195, 244, 668, 979, 996
BstMAI	GTCTC	5 cut(s)	59, 596, 942, 1141, 1380
BstMBI	GATC	5 cut(s)	192, 241, 665, 976, 993
BstMCI	CGRYCG	1 cut(s)	728
BstMWI	GCNNNNNNNGC	1 cut(s)	845
BstNSI	RCATGY	1 cut(s)	906
BstSFI	CTRYAG	1 cut(s)	520
BstV1I	GCAGC	5 cut(s)	187, 816, 835, 838, 1021
BstV2I	GAAGAC	4 cut(s)	142, 946, 1149, 1203
BstX2I	RGATCY	2 cut(s)	241, 976
BstYI	RGATCY	2 cut(s)	241, 976
Bsu15I	ATCGAT	1 cut(s)	1306
BsuRI	GGCC	1 cut(s)	965
BsuTUI	ATCGAT	1 cut(s)	1306
BtrI	CACGTC	2 cut(s)	606, 1374
BtsCI	GGATG	5 cut(s)	17, 68, 228, 850, 1080
BtsIMutI	CAGTG	1 cut(s)	148
BveI	ACCTGC	1 cut(s)	59
Cac8I	GCNNGC	2 cut(s)	333, 1395
Cfr10I	RCCGGY	1 cut(s)	965
ClaI	ATCGAT	1 cut(s)	1306
CseI	GACGC	1 cut(s)	821
Csp6I	GTAC	4 cut(s)	969, 1172, 1201, 1249
CspCI	CAANNNNNGTGG	2 cut(s)	1308, 1343
CviAII	CATG	5 cut(s)	274, 436, 878, 903, 1192
CviQI	GTAC	4 cut(s)	969, 1172, 1201, 1249
DdeI	CTNAG	5 cut(s)	50, 58, 441, 600, 787
DpnI	GATC	5 cut(s)	194, 243, 667, 978, 995
DpnII	GATC	5 cut(s)	192, 241, 665, 976, 993
Eam1104I	CTCTTC	4 cut(s)	105, 542, 666, 945
EarI	CTCTTC	4 cut(s)	105, 542, 666, 945
Eco57I	CTGAAG	2 cut(s)	396, 682
EcoT22I	ATGCAT	1 cut(s)	904
Esp3I	CGTCTC	2 cut(s)	596, 1380
FaeI	CATG	5 cut(s)	277, 439, 881, 906, 1195
FalI	AAGNNNNNCTT	4 cut(s)	1112, 1144, 1141, 1173
FaqI	GGGAC	1 cut(s)	727
FatI	CATG	5 cut(s)	273, 435, 877, 902, 1191
FbaI	TGATCA	1 cut(s)	993
Fnu4HI	GCNGC	5 cut(s)	176, 830, 849, 852, 1035
FokI	GGATG	5 cut(s)	24, 75, 235, 857, 1087
Fsp4HI	GCNGC	5 cut(s)	176, 830, 849, 852, 1035
FspBI	CTAG	2 cut(s)	210, 861
GluI	GCNGC	5 cut(s)	176, 830, 849, 852, 1035
HaeIII	GGCC	1 cut(s)	965
HapII	CCGG	1 cut(s)	966
HgaI	GACGC	1 cut(s)	821
Hin1II	CATG	5 cut(s)	277, 439, 881, 906, 1195
HincII	GTYRAC	1 cut(s)	597
HindII	GTYRAC	1 cut(s)	597
HindIII	AAGCTT	1 cut(s)	1234
HinfI	GANTC	4 cut(s)	589, 676, 1101, 1257
HpaII	CCGG	1 cut(s)	966
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	597
Hpy188I	TCNGA	7 cut(s)	90, 670, 681, 701, 1186, 1229, 1387
Hpy188III	TCNNGA	8 cut(s)	190, 210, 495, 734, 861, 985, 1105, 1140
Hpy8I	GTNNAC	1 cut(s)	597
Hpy99I	CGWCG	1 cut(s)	991
HpyAV	CCTTC	5 cut(s)	20, 229, 318, 420, 865
HpyCH4III	ACNGT	4 cut(s)	34, 718, 807, 1050
HpyCH4IV	ACGT	3 cut(s)	605, 685, 1373
HpyCH4V	TGCA	7 cut(s)	175, 609, 883, 902, 1037, 1319, 1364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	845
HpyF3I	CTNAG	5 cut(s)	50, 58, 441, 600, 787
HpySE526I	ACGT	3 cut(s)	605, 685, 1373
Hsp92II	CATG	5 cut(s)	277, 439, 881, 906, 1195
Ksp22I	TGATCA	1 cut(s)	993
Kzo9I	GATC	5 cut(s)	192, 241, 665, 976, 993
LmnI	GCTCC	3 cut(s)	328, 503, 793
Lsp1109I	GCAGC	5 cut(s)	187, 816, 835, 838, 1021
LweI	GCATC	4 cut(s)	291, 835, 1021, 1306
MaeI	CTAG	2 cut(s)	210, 861
MaeII	ACGT	3 cut(s)	605, 685, 1373
MaeIII	GTNAC	3 cut(s)	5, 472, 982
MalI	GATC	5 cut(s)	194, 243, 667, 978, 995
MboI	GATC	5 cut(s)	192, 241, 665, 976, 993
MfeI	CAATTG	1 cut(s)	641
MflI	RGATCY	2 cut(s)	241, 976
MluCI	AATT	7 cut(s)	456, 511, 627, 641, 705, 1215, 1320
Mph1103I	ATGCAT	1 cut(s)	904
MroXI	GAANNNNTTC	1 cut(s)	1124
MseI	TTAA	2 cut(s)	84, 479
MslI	CAYNNNNRTG	5 cut(s)	35, 470, 989, 1073, 1196
MspA1I	CMGCKG	1 cut(s)	445
MspI	CCGG	1 cut(s)	966
MunI	CAATTG	1 cut(s)	641
Mva1269I	GAATGC	2 cut(s)	365, 377
MwoI	GCNNNNNNNGC	1 cut(s)	845
NdeII	GATC	5 cut(s)	192, 241, 665, 976, 993
NlaIII	CATG	5 cut(s)	277, 439, 881, 906, 1195
NmuCI	GTSAC	2 cut(s)	472, 982
NsiI	ATGCAT	1 cut(s)	904
NspI	RCATGY	1 cut(s)	906
OliI	CACNNNNGTG	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PctI	GAATGC	2 cut(s)	365, 377
PdmI	GAANNNNTTC	1 cut(s)	1124
PfeI	GAWTC	4 cut(s)	589, 676, 1101, 1257
PkrI	GCNGC	5 cut(s)	177, 831, 850, 853, 1036
PsuI	RGATCY	2 cut(s)	241, 976
PvuII	CAGCTG	1 cut(s)	445
RsaI	GTAC	4 cut(s)	970, 1173, 1202, 1250
RsaNI	GTAC	4 cut(s)	969, 1172, 1201, 1249
RseI	CAYNNNNRTG	5 cut(s)	35, 470, 989, 1073, 1196
SaqAI	TTAA	2 cut(s)	84, 479
SatI	GCNGC	5 cut(s)	176, 830, 849, 852, 1035
Sau3AI	GATC	5 cut(s)	192, 241, 665, 976, 993
SfaNI	GCATC	4 cut(s)	291, 835, 1021, 1306
SfcI	CTRYAG	1 cut(s)	520
SmiMI	CAYNNNNRTG	5 cut(s)	35, 470, 989, 1073, 1196
SmlI	CTYRAG	2 cut(s)	1138, 1237
SmoI	CTYRAG	2 cut(s)	1138, 1237
Sse9I	AATT	7 cut(s)	456, 511, 627, 641, 705, 1215, 1320
SsiI	CCGC	3 cut(s)	724, 773, 1009
SspI	AATATT	1 cut(s)	765
SspMI	CTAG	2 cut(s)	210, 861
TaaI	ACNGT	4 cut(s)	34, 718, 807, 1050
TaiI	ACGT	3 cut(s)	608, 688, 1376
TaqI	TCGA	3 cut(s)	189, 1306, 1401
TasI	AATT	7 cut(s)	456, 511, 627, 641, 705, 1215, 1320
TatI	WGTACW	3 cut(s)	1171, 1200, 1248
TfiI	GAWTC	4 cut(s)	589, 676, 1101, 1257
Tru1I	TTAA	2 cut(s)	84, 479
Tru9I	TTAA	2 cut(s)	84, 479
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	2 cut(s)	472, 982
TseI	GCWGC	5 cut(s)	175, 829, 848, 851, 1034
Tsp45I	GTSAC	2 cut(s)	472, 982
TspDTI	ATGAA	6 cut(s)	123, 262, 386, 529, 1057, 1133
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	1 cut(s)	148
XapI	RAATTY	1 cut(s)	511
XbaI	TCTAGA	2 cut(s)	209, 860
XceI	RCATGY	1 cut(s)	906
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XmnI	GAANNNNTTC	1 cut(s)	1124
XspI	CTAG	2 cut(s)	210, 861
Zsp2I	ATGCAT	1 cut(s)	904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.