Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002109

Physical Location & Seq

Genomic Coordinates Reverse (-)

66681207 .. 66685543

Gene Structure 4337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG465100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGGTTGGGGTTGGGCAATATGGGAGGGAGTGGTAGCGGGGGGATCTCTGGGACTGCTGGGTTGGGCCGGGTTGTGGTTCTTGAACCGAAGGCTGTACAAAGAGTACGAAGAGAAGAGGGTGTTAGTTCAGATCATTTTCAGCGTCGTCTTCGCCTTCTCTTGTAATCTGTTGCAGCTCGTCCTCTTCGAGATCATCCCCCTTCTCTCCCAGAGGGCACGATGGCTCAACTGGAAGCTCGATTTGTTTTGCCTCATACTCTTACTCGTTTTCATGCTGCCTTACTACCATTGTTTTCTCATGCTTTGCAACAATGGATTCCGTAAAGAGCGCGCGGCTTTTGGATCCGCCTTGTTCCTCCTCGCTTTCCTTTATGCTTTCTGGCGCATGGGAATTCACTTCCCCATGCCTTCCCCTGATAAAGGCTTCTTCACAATGCCCCAACTGGTCAGTCGGATTGGGGTCATTGGCGTTACCGTCATGGCTGTCTTGTCTGGCTTTGGAGCTGTCAATTTGCCCTACAGTTATTTATCTCTCTTTATCAGAGAGATTGAGGAATCCGAGATCAAGTCCTTGGAAAGACAGCTAATGCAATCCATCGAGAGTTGTATTACTAAGAAAAAGAAAATCATTCTTTCTCAGATGGAGATGGAAAGGATTCAAGGATCAGAAGAGAAATTAAAGGCTAGATCTTTCTTTAAAAGAATTGTTGGCACTGTTGTGCGATCTGTGCAAGAGGATCAAAAGGAGCAAGTATATTTCACTCTTGTTCATTGGAATGTTGATTGTTATATCAGTACGGGGATTCTTGACAAATTTGATGAAGTTTCCAGAGTTGGAAGTGGATCTTCTAGCAATGTCGTATTGTTTCTGTCGGAAATTATGGGAATGTACTTTGTGTCATCTATTCTTTTGATCAGAAAAAGCTTGGCAACTGAGTACAGGATGATCATAACAGATGTTTTGGGTGGAGATATTCAATTTGACTTCTATCACCGGTGGTTTGATGCTATCTTTGTGGCCAGTGCTTTCCTTTCTCTGCTCTTGCTTTCTGCACATTATACTTCTCGGCAGGCTGACAAACACCCGATCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001101 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006950 GO:0007275 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010228 GO:0010427 GO:0012505 GO:0016020 GO:0017076 GO:0019001 GO:0019840 GO:0019899 GO:0022414 GO:0031406 GO:0031984 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033293 GO:0033554 GO:0033993 GO:0035639 GO:0036094 GO:0042175 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051020 GO:0051716 GO:0061458 GO:0070417 GO:0071944 GO:0097159 GO:0097305 GO:0097367 GO:0098827 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABA_GPCR GPHR_N

Protein Analysis

365

Amino Acids

42.07

Weight (kDa)

8.63

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GPHR_N	PF12537	143 - 210	8.6e-24	The Golgi pH Regulator (GPHR) Family N-terminal
ABA_GPCR	PF12430	273 - 353	4.5e-20	Abscisic acid G-protein coupled receptor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64990 AT1G64990 AT4G27630 AT4G27630 AT4G27630 AT4G27630 AT4G27630 AT4G27630
fragaria_vesca	FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230
malus_domestica	MD01G1239200.v1.1 MD07G1310900.v1.1
prunus_persica	Prupe.2G329100_v2.0.a1 Prupe.2G329100_v2.0.a1 Prupe.2G329100_v2.0.a1
pyrus_communis	pycom01g24650 pycom07g28320
rosa_chinensis	RchiOBHm_Chr1g0384591
rosa_laevigata	RLG00000026029
rosa_multiflora	Rmu_co8335957.1_g000001 Rmu_sc0006005.1_g000017
rosa_roxburghii	Rroxscaffold_4G00276560
rosa_rugosa	Rorug01G0449600 Rorug01G0449700 Rorug01G0449800 Rorug01G0449900 Rorug01G0450000
rosa_samantha	Rh1AG474400 Rh1BG432400 Rh1CG445600 Rh1DG465100
rosa_wichuraiana	Rw1G039820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	333, 335
AciI	CCGC	3 cut(s)	38, 335, 348
AclWI	GGATC	6 cut(s)	52, 339, 352, 673, 747, 853
AcoI	YGGCCR	1 cut(s)	1020
AcsI	RAATTY	2 cut(s)	393, 815
AfaI	GTAC	5 cut(s)	98, 107, 799, 893, 941
AfiI	CCNNNNNNNGG	2 cut(s)	75, 422
AgeI	ACCGGT	1 cut(s)	996
AgsI	TTSAA	3 cut(s)	85, 662, 980
AleI	CACNNNNGTG	1 cut(s)	719
AluBI	AGCT	5 cut(s)	178, 238, 506, 586, 927
AluI	AGCT	5 cut(s)	178, 238, 506, 586, 927
AlwI	GGATC	6 cut(s)	52, 339, 352, 673, 747, 853
AoxI	GGCC	2 cut(s)	66, 1020
ApeKI	GCWGC	2 cut(s)	175, 277
ApoI	RAATTY	2 cut(s)	393, 815
AsiGI	ACCGGT	1 cut(s)	996
Asp700I	GAANNNNTTC	1 cut(s)	657
AspLEI	GCGC	3 cut(s)	333, 335, 387
AspS9I	GGNCC	1 cut(s)	66
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	986
BaeGI	GKGCMC	1 cut(s)	220
BalI	TGGCCA	1 cut(s)	1022
BamHI	GGATCC	1 cut(s)	344
BbsI	GAAGAC	1 cut(s)	142
BbvI	GCAGC	2 cut(s)	187, 264
BccI	CCATC	4 cut(s)	216, 605, 637, 643
BclI	TGATCA	2 cut(s)	915, 948
BcnI	CCSGG	1 cut(s)	70
BfaI	CTAG	2 cut(s)	687, 852
BfmI	CTRYAG	1 cut(s)	520
BglII	AGATCT	1 cut(s)	689
BisI	GCNGC	3 cut(s)	176, 278, 336
BlsI	GCNGC	3 cut(s)	177, 279, 337
Bme1390I	CCNGG	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	1 cut(s)	346
BmrFI	CCNGG	1 cut(s)	70
BmsI	GCATC	1 cut(s)	997
BpiI	GAAGAC	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	70
Bsa29I	ATCGAT	1 cut(s)	1092
BsaJI	CCNNGG	1 cut(s)	573
BsaWI	WCCGGW	1 cut(s)	996
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 422
Bse118I	RCCGGY	1 cut(s)	996
Bse1I	ACTGG	3 cut(s)	236, 450, 1023
Bse3DI	GCAATG	1 cut(s)	862
BseCI	ATCGAT	1 cut(s)	1092
BseDI	CCNNGG	1 cut(s)	573
BseGI	GGATG	2 cut(s)	195, 951
BseLI	CCNNNNNNNGG	2 cut(s)	75, 422
BseMI	GCAATG	1 cut(s)	862
BseMII	CTCAG	2 cut(s)	653, 927
BseNI	ACTGG	3 cut(s)	236, 450, 1023
BsePI	GCGCGC	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	350
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	2 cut(s)	187, 264
BseYI	CCCAGC	1 cut(s)	58
BsgI	GTGCAG	1 cut(s)	1038
Bsh1236I	CGCG	2 cut(s)	333, 335
Bsh1285I	CGRYCG	1 cut(s)	1092
BshFI	GGCC	2 cut(s)	68, 1022
BshTI	ACCGGT	1 cut(s)	996
BshVI	ATCGAT	1 cut(s)	1092
BsiEI	CGRYCG	1 cut(s)	1092
BsiSI	CCGG	2 cut(s)	69, 997
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	2 cut(s)	75, 422
BsmFI	GGGAC	1 cut(s)	66
BsnI	GGCC	2 cut(s)	68, 1022
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp1407I	TGTACA	1 cut(s)	96
BspACI	CCGC	3 cut(s)	38, 335, 348
BspANI	GGCC	2 cut(s)	68, 1022
BspCNI	CTCAG	2 cut(s)	652, 928
BspDI	ATCGAT	1 cut(s)	1092
BspFNI	CGCG	2 cut(s)	333, 335
BspLI	GGNNCC	1 cut(s)	346
BspPI	GGATC	6 cut(s)	52, 339, 352, 673, 747, 853
BsrDI	GCAATG	1 cut(s)	862
BsrFI	RCCGGY	1 cut(s)	996
BsrGI	TGTACA	1 cut(s)	96
BsrI	ACTGG	3 cut(s)	236, 450, 1023
BssAI	RCCGGY	1 cut(s)	996
BssECI	CCNNGG	1 cut(s)	573
BssHII	GCGCGC	1 cut(s)	331
BssT1I	CCWWGG	1 cut(s)	573
Bst4CI	ACNGT	3 cut(s)	478, 524, 718
Bst6I	CTCTTC	4 cut(s)	105, 110, 191, 666
BstAUI	TGTACA	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	333, 1074
BstDEI	CTNAG	3 cut(s)	615, 639, 936
BstENI	CCTNNNNNAGG	1 cut(s)	420
BstF5I	GGATG	2 cut(s)	195, 951
BstFNI	CGCG	2 cut(s)	333, 335
BstHHI	GCGC	3 cut(s)	333, 335, 387
BstMCI	CGRYCG	1 cut(s)	1092
BstMWI	GCNNNNNNNGC	1 cut(s)	730
BstSCI	CCNGG	1 cut(s)	68
BstSFI	CTRYAG	1 cut(s)	520
BstSLI	GKGCMC	1 cut(s)	220
BstUI	CGCG	2 cut(s)	333, 335
BstV1I	GCAGC	2 cut(s)	187, 264
BstV2I	GAAGAC	1 cut(s)	142
BstX2I	RGATCY	4 cut(s)	44, 344, 689, 845
BstYI	RGATCY	4 cut(s)	44, 344, 689, 845
Bsu15I	ATCGAT	1 cut(s)	1092
BsuRI	GGCC	2 cut(s)	68, 1022
BsuTUI	ATCGAT	1 cut(s)	1092
BtsCI	GGATG	2 cut(s)	195, 951
BtsIMutI	CAGTG	2 cut(s)	714, 1030
Cac8I	GCNNGC	2 cut(s)	333, 1074
CfoI	GCGC	3 cut(s)	333, 335, 387
Cfr10I	RCCGGY	1 cut(s)	996
Cfr13I	GGNCC	1 cut(s)	66
ClaI	ATCGAT	1 cut(s)	1092
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	5 cut(s)	97, 106, 798, 892, 940
CspAI	ACCGGT	1 cut(s)	996
CviAII	CATG	5 cut(s)	274, 301, 388, 406, 481
CviQI	GTAC	5 cut(s)	97, 106, 798, 892, 940
DdeI	CTNAG	3 cut(s)	615, 639, 936
DraI	TTTAAA	1 cut(s)	700
EaeI	YGGCCR	1 cut(s)	1020
Eam1104I	CTCTTC	4 cut(s)	105, 110, 191, 666
EarI	CTCTTC	4 cut(s)	105, 110, 191, 666
EciI	GGCGGA	1 cut(s)	337
Eco130I	CCWWGG	1 cut(s)	573
EcoNI	CCTNNNNNAGG	1 cut(s)	420
EcoRI	GAATTC	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	573
ErhI	CCWWGG	1 cut(s)	573
FaeI	CATG	5 cut(s)	277, 304, 391, 409, 484
FalI	AAGNNNNNCTT	2 cut(s)	832, 864
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	5 cut(s)	273, 300, 387, 405, 480
FauI	CCCGC	1 cut(s)	31
FbaI	TGATCA	2 cut(s)	915, 948
Fnu4HI	GCNGC	3 cut(s)	176, 278, 336
FokI	GGATG	2 cut(s)	182, 958
Fsp4HI	GCNGC	3 cut(s)	176, 278, 336
FspBI	CTAG	2 cut(s)	687, 852
GlaI	GCGC	3 cut(s)	332, 334, 386
GluI	GCNGC	3 cut(s)	176, 278, 336
GsaI	CCCAGC	1 cut(s)	62
HaeIII	GGCC	2 cut(s)	68, 1022
HapII	CCGG	2 cut(s)	69, 997
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	3 cut(s)	333, 335, 387
Hin1II	CATG	5 cut(s)	277, 304, 391, 409, 484
Hin6I	GCGC	3 cut(s)	331, 333, 385
HinP1I	GCGC	3 cut(s)	331, 333, 385
HindIII	AAGCTT	1 cut(s)	925
HinfI	GANTC	4 cut(s)	318, 557, 658, 805
HpaII	CCGG	2 cut(s)	69, 997
HphI	GGTGA	1 cut(s)	986
Hpy188I	TCNGA	8 cut(s)	132, 456, 545, 562, 642, 670, 877, 920
Hpy188III	TCNNGA	5 cut(s)	82, 190, 601, 809, 831
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	4 cut(s)	84, 166, 212, 420
HpyCH4III	ACNGT	3 cut(s)	478, 524, 718
HpyCH4V	TGCA	5 cut(s)	175, 309, 592, 733, 1055
HpyF10VI	GCNNNNNNNGC	1 cut(s)	730
HpyF3I	CTNAG	3 cut(s)	615, 639, 936
Hsp92II	CATG	5 cut(s)	277, 304, 391, 409, 484
HspAI	GCGC	3 cut(s)	331, 333, 385
Ksp22I	TGATCA	2 cut(s)	915, 948
LmnI	GCTCC	2 cut(s)	503, 748
Lsp1109I	GCAGC	2 cut(s)	187, 264
LweI	GCATC	1 cut(s)	997
MaeI	CTAG	2 cut(s)	687, 852
MaeIII	GTNAC	1 cut(s)	472
MboII	GAAGA	7 cut(s)	122, 127, 142, 178, 421, 683, 840
MflI	RGATCY	4 cut(s)	44, 344, 689, 845
MhlI	GDGCHC	1 cut(s)	220
MlsI	TGGCCA	1 cut(s)	1022
MluCI	AATT	7 cut(s)	393, 511, 677, 705, 815, 879, 980
MluNI	TGGCCA	1 cut(s)	1022
MmeI	TCCRAC	3 cut(s)	434, 817, 855
MnlI	CCTC	9 cut(s)	19, 111, 194, 207, 263, 368, 371, 547, 730
Mox20I	TGGCCA	1 cut(s)	1022
MroXI	GAANNNNTTC	1 cut(s)	657
MscI	TGGCCA	1 cut(s)	1022
MseI	TTAA	3 cut(s)	680, 699, 1096
MslI	CAYNNNNRTG	2 cut(s)	719, 777
Msp20I	TGGCCA	1 cut(s)	1022
MspI	CCGG	2 cut(s)	69, 997
MspR9I	CCNGG	1 cut(s)	70
MvnI	CGCG	2 cut(s)	333, 335
MwoI	GCNNNNNNNGC	1 cut(s)	730
NciI	CCSGG	1 cut(s)	70
NlaIII	CATG	5 cut(s)	277, 304, 391, 409, 484
NlaIV	GGNNCC	1 cut(s)	346
NmeAIII	GCCGAG	1 cut(s)	1048
OliI	CACNNNNGTG	1 cut(s)	719
PauI	GCGCGC	1 cut(s)	331
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	657
PfeI	GAWTC	4 cut(s)	318, 557, 658, 805
PinAI	ACCGGT	1 cut(s)	996
PkrI	GCNGC	3 cut(s)	177, 279, 337
Ple19I	CGATCG	1 cut(s)	1092
PspFI	CCCAGC	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	346
PspPI	GGNCC	1 cut(s)	66
PsuI	RGATCY	4 cut(s)	44, 344, 689, 845
PteI	GCGCGC	1 cut(s)	331
PvuI	CGATCG	1 cut(s)	1092
RsaI	GTAC	5 cut(s)	98, 107, 799, 893, 941
RsaNI	GTAC	5 cut(s)	97, 106, 798, 892, 940
RseI	CAYNNNNRTG	2 cut(s)	719, 777
SaqAI	TTAA	3 cut(s)	680, 699, 1096
SatI	GCNGC	3 cut(s)	176, 278, 336
Sau96I	GGNCC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	5 cut(s)	180, 240, 508, 588, 929
SfaNI	GCATC	1 cut(s)	997
SfcI	CTRYAG	1 cut(s)	520
SgrAI	CRCCGGYG	1 cut(s)	996
SmiMI	CAYNNNNRTG	2 cut(s)	719, 777
Sse9I	AATT	7 cut(s)	393, 511, 677, 705, 815, 879, 980
SsiI	CCGC	3 cut(s)	38, 335, 348
SspMI	CTAG	2 cut(s)	687, 852
StyD4I	CCNGG	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	3 cut(s)	478, 524, 718
TaqI	TCGA	4 cut(s)	189, 240, 600, 1092
TasI	AATT	7 cut(s)	393, 511, 677, 705, 815, 879, 980
TatI	WGTACW	3 cut(s)	96, 891, 939
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	4 cut(s)	318, 557, 658, 805
Tru1I	TTAA	3 cut(s)	680, 699, 1096
Tru9I	TTAA	3 cut(s)	680, 699, 1096
TscAI	CASTG	2 cut(s)	721, 1030
TseI	GCWGC	2 cut(s)	175, 277
TspDTI	ATGAA	3 cut(s)	262, 761, 837
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	2 cut(s)	721, 1030
XagI	CCTNNNNNAGG	1 cut(s)	420
XapI	RAATTY	2 cut(s)	393, 815
XmnI	GAANNNNTTC	1 cut(s)	657
XspI	CTAG	2 cut(s)	687, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.