MD07G1310900.v1.1

GPCR-type G protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
36590180 .. 36595759
5580 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1310900.v1.1.491

Sequence Viewer

Length: 1407 bp
ATGGGTTGGGGTTGGGCAATCTACGAAGGAGTGGTGGCGTTGGGATCGCTAGGGCTGCTGGGATGGGCGGGGCTGTGGTTCTTGAACCGAAGGCTCTACAAAGAGTACGAAGAGAAGAGGGTCTTAGTTCAGATCATCTTCAGCGTCGTCTTCGCCTTCTCCTGCAATCTTCTGCAGCTCGTCCTCTTCGAGATCATCCCCTTTCTCTCCCAAAGGGCCCGATGGCTCAACTGGAAGCTGGATTTGTTTTGTCTCATACTGTTACTGGTTTTCATGTTGCCTTATTATCATTGTTTCTTGATGCTCTGCAACAATGGGTTCCGGAAGGAACGTGCTGCTTTTGGATCATTCTTGTTCTTGCTAGCCTTCCTTTATGCTTTTTGGCGCATGGGCATTCACTTCCCTATGCCTTCCCCTGATAAAGGCTTCTTCACCATGCCTCAGTTGGTCAGTCGCATTGGCGTCATTGGCGTTACCGTCATGGCTGTCTTGTCTGGTTTTGGAGCTGTCAATTTACCCTATAGTTACTTATCTCTCTTTATCCGAGAAATTGAGGAAACTGAGATCAAGTCCTTGGAAAGACAGCTCATGCAATCCATCGAGACTTGTATTGCTAAGAAGAAGAAAATCATTCTTTCTCAAATGGAGATGGAACGCATTCAAGGATCAGAAGAGAAATTAAAAGCCAGATCTTTCTTTAAAAGAATTGTTGGCACTGTTGTGCGATCTGTGCAAGATGATCAAAAGGAGCAAGATATTAGAAACATGGAAGCAGAAGTGCTAGCATTGGAAGAGCTTTCAAAGCAGCTATTCCTAGAAATATACGAGCTTCGTCAAGCAAAGGAGGCTGCTGCTTATTCTCGAACCTGGAGGGGTCATATGCAGAACCTACTAGGTTATGCATGCTCAATCTACTGTGTATATAAAATGATTAAGTCTTTGCAAAGTGTTGTTTTCAAAGAGGCTGGCTCTGTGGATCCTGTGACGATGACAATTAGCATATTCTTGCAGTTCTTTGACATTGGTATCAATGCAGCATTGCTATCACAGTATATTTCACTCTTGTTCATTGGAATGTTGATTGTTATATCAGTTCGTGGATTCTTGACTAATTTAATGAAGTTCTTTTTTGCAGTTTCCAGAGTTGGAAGTGGATCTTCTAGCAATGTTGTATTGTTTCTGTCTGAAATTATGGGAATGTACTTTGTGTCCTCTATTCTATTGATAAGGAAAAGCTTGGCAACTGAGTACAGGATGATCATAACAGATGTATTGGGTGGAGATATTCAGTTTGACTTCTATCACCGGTGGTTTGATGCAATCTTTGTGGCCAGTGCTTTCCTTTCTTTGCTTTTGCTTTCTGCACATTATACTTCTCGCCAAGCTGACAAACACCCGATTGATTAA

Protein Analysis

469

Amino Acids

53.83

Weight (kDa)

8.9

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GPHR_N PF12537 143 - 210 2e-23 The Golgi pH Regulator (GPHR) Family N-terminal
ABA_GPCR PF12430 286 - 456 1e-43 Abscisic acid G-protein coupled receptor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 321
AciI CCGC 1 cut(s) 68
AclWI GGATC 6 cut(s) 52, 352, 673, 971, 984, 1162
AcoI YGGCCR 1 cut(s) 1329
AcuI CTGAAG 1 cut(s) 124
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 3 cut(s) 107, 1202, 1250
AfiI CCNNNNNNNGG 1 cut(s) 422
AgeI ACCGGT 1 cut(s) 1305
AgsI TTSAA 4 cut(s) 85, 662, 801, 958
AjnI CCWGG 1 cut(s) 866
AleI CACNNNNGTG 1 cut(s) 719
AluBI AGCT 9 cut(s) 178, 238, 506, 586, 796, 808, 829, 1236, 1385
AluI AGCT 9 cut(s) 178, 238, 506, 586, 796, 808, 829, 1236, 1385
Alw26I GTCTC 2 cut(s) 257, 596
AlwI GGATC 6 cut(s) 52, 352, 673, 971, 984, 1162
Aor13HI TCCGGA 1 cut(s) 321
AoxI GGCC 2 cut(s) 216, 1329
ApaI GGGCCC 1 cut(s) 220
ApeKI GCWGC 7 cut(s) 55, 175, 335, 805, 848, 851, 1034
AsiGI ACCGGT 1 cut(s) 1305
Asp700I GAANNNNTTC 1 cut(s) 657
AspLEI GCGC 1 cut(s) 387
AspS9I GGNCC 2 cut(s) 216, 217
AsuHPI GGTGA 2 cut(s) 424, 1295
AsuNHI GCTAGC 2 cut(s) 361, 781
BaeGI GKGCMC 1 cut(s) 220
BaeI ACNNNNGTAYC 2 cut(s) 1009, 1042
BalI TGGCCA 1 cut(s) 1331
BamHI GGATCC 1 cut(s) 976
BanII GRGCYC 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 142
BbvI GCAGC 7 cut(s) 42, 187, 322, 817, 835, 838, 1046
BccI CCATC 4 cut(s) 57, 216, 605, 643
BciT130I CCWGG 1 cut(s) 868
BclI TGATCA 2 cut(s) 739, 1257
BcoDI GTCTC 2 cut(s) 257, 596
BfaI CTAG 6 cut(s) 50, 362, 782, 815, 893, 1161
BfmI CTRYAG 2 cut(s) 173, 520
BglII AGATCT 1 cut(s) 689
BisI GCNGC 7 cut(s) 56, 176, 336, 806, 849, 852, 1035
BlsI GCNGC 7 cut(s) 57, 177, 337, 807, 850, 853, 1036
Bme1390I CCNGG 1 cut(s) 868
BmgT120I GGNCC 2 cut(s) 216, 217
BmiI GGNNCC 3 cut(s) 218, 320, 978
BmrFI CCNGG 1 cut(s) 868
BmsI GCATC 2 cut(s) 291, 1306
BmtI GCTAGC 2 cut(s) 365, 785
BpiI GAAGAC 1 cut(s) 142
BplI GAGNNNNNCTC 2 cut(s) 953, 985
BpmI CTGGAG 1 cut(s) 889
BsaHI GRCGYC 1 cut(s) 462
BsaJI CCNNGG 1 cut(s) 573
BsaWI WCCGGW 2 cut(s) 321, 1305
Bsc4I CCNNNNNNNGG 1 cut(s) 422
Bse118I RCCGGY 1 cut(s) 1305
Bse1I ACTGG 3 cut(s) 236, 270, 1332
Bse3DI GCAATG 2 cut(s) 1037, 1171
BseAI TCCGGA 1 cut(s) 321
BseBI CCWGG 1 cut(s) 868
BseDI CCNNGG 1 cut(s) 573
BseGI GGATG 3 cut(s) 68, 195, 1260
BseLI CCNNNNNNNGG 1 cut(s) 422
BseMI GCAATG 2 cut(s) 1037, 1171
BseMII CTCAG 3 cut(s) 455, 552, 1236
BseNI ACTGG 3 cut(s) 236, 270, 1332
BseSI GKGCMC 1 cut(s) 220
BseXI GCAGC 7 cut(s) 42, 187, 322, 817, 835, 838, 1046
BseYI CCCAGC 1 cut(s) 58
BsgI GTGCAG 1 cut(s) 1347
BshFI GGCC 2 cut(s) 218, 1331
BshTI ACCGGT 1 cut(s) 1305
BsiSI CCGG 2 cut(s) 322, 1306
BslI CCNNNNNNNGG 1 cut(s) 422
BsmAI GTCTC 2 cut(s) 257, 596
BsmI GAATGC 2 cut(s) 393, 657
BsnI GGCC 2 cut(s) 218, 1331
Bsp120I GGGCCC 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 220
Bsp13I TCCGGA 1 cut(s) 321
BspACI CCGC 1 cut(s) 68
BspANI GGCC 2 cut(s) 218, 1331
BspCNI CTCAG 3 cut(s) 454, 553, 1237
BspEI TCCGGA 1 cut(s) 321
BspLI GGNNCC 3 cut(s) 218, 320, 978
BspMAI CTGCAG 1 cut(s) 177
BspOI GCTAGC 2 cut(s) 365, 785
BspPI GGATC 6 cut(s) 52, 352, 673, 971, 984, 1162
BspQI GCTCTTC 1 cut(s) 786
BsrDI GCAATG 2 cut(s) 1037, 1171
BsrFI RCCGGY 1 cut(s) 1305
BsrI ACTGG 3 cut(s) 236, 270, 1332
BssAI RCCGGY 1 cut(s) 1305
BssECI CCNNGG 1 cut(s) 573
BssNI GRCGYC 1 cut(s) 462
BssT1I CCWWGG 1 cut(s) 573
Bst2UI CCWGG 1 cut(s) 868
Bst4CI ACNGT 5 cut(s) 261, 478, 718, 917, 1050
Bst6I CTCTTC 5 cut(s) 105, 110, 191, 666, 786
BstACI GRCGYC 1 cut(s) 462
BstC8I GCNNGC 4 cut(s) 363, 783, 904, 967
BstDEI CTNAG 5 cut(s) 124, 441, 561, 615, 1245
BstENI CCTNNNNNAGG 1 cut(s) 420
BstF5I GGATG 3 cut(s) 68, 195, 1260
BstHHI GCGC 1 cut(s) 387
BstMAI GTCTC 2 cut(s) 257, 596
BstMWI GCNNNNNNNGC 5 cut(s) 55, 468, 730, 802, 845
BstNI CCWGG 1 cut(s) 868
BstNSI RCATGY 1 cut(s) 906
BstSCI CCNGG 1 cut(s) 866
BstSFI CTRYAG 2 cut(s) 173, 520
BstSLI GKGCMC 1 cut(s) 220
BstV1I GCAGC 7 cut(s) 42, 187, 322, 817, 835, 838, 1046
BstV2I GAAGAC 1 cut(s) 142
BstX2I RGATCY 3 cut(s) 689, 976, 1154
BstYI RGATCY 3 cut(s) 689, 976, 1154
BsuRI GGCC 2 cut(s) 218, 1331
BtsCI GGATG 3 cut(s) 68, 195, 1260
BtsIMutI CAGTG 2 cut(s) 714, 1339
Cac8I GCNNGC 4 cut(s) 363, 783, 904, 967
CfoI GCGC 1 cut(s) 387
Cfr10I RCCGGY 1 cut(s) 1305
Cfr13I GGNCC 2 cut(s) 216, 217
CseI GACGC 2 cut(s) 133, 451
Csp6I GTAC 3 cut(s) 106, 1201, 1249
CspAI ACCGGT 1 cut(s) 1305
CspCI CAANNNNNGTGG 2 cut(s) 1308, 1343
CviAII CATG 7 cut(s) 274, 388, 436, 481, 589, 766, 903
CviQI GTAC 3 cut(s) 106, 1201, 1249
DdeI CTNAG 5 cut(s) 124, 441, 561, 615, 1245
DraI TTTAAA 1 cut(s) 700
EaeI YGGCCR 1 cut(s) 1329
Eam1104I CTCTTC 5 cut(s) 105, 110, 191, 666, 786
EarI CTCTTC 5 cut(s) 105, 110, 191, 666, 786
Eco130I CCWWGG 1 cut(s) 573
Eco24I GRGCYC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 124
EcoNI CCTNNNNNAGG 1 cut(s) 420
EcoO109I RGGNCCY 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 866
EcoT14I CCWWGG 1 cut(s) 573
EcoT22I ATGCAT 1 cut(s) 904
EcoT38I GRGCYC 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 573
FaeI CATG 7 cut(s) 277, 391, 439, 484, 592, 769, 906
FalI AAGNNNNNCTT 4 cut(s) 107, 139, 1141, 1173
FatI CATG 7 cut(s) 273, 387, 435, 480, 588, 765, 902
FauI CCCGC 1 cut(s) 61
FauNDI CATATG 1 cut(s) 879
FbaI TGATCA 2 cut(s) 739, 1257
Fnu4HI GCNGC 7 cut(s) 56, 176, 336, 806, 849, 852, 1035
FokI GGATG 3 cut(s) 75, 182, 1267
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 7 cut(s) 56, 176, 336, 806, 849, 852, 1035
FspBI CTAG 6 cut(s) 50, 362, 782, 815, 893, 1161
GlaI GCGC 1 cut(s) 386
GluI GCNGC 7 cut(s) 56, 176, 336, 806, 849, 852, 1035
GsaI CCCAGC 1 cut(s) 62
GsuI CTGGAG 1 cut(s) 889
HaeIII GGCC 2 cut(s) 218, 1331
HapII CCGG 2 cut(s) 322, 1306
HgaI GACGC 2 cut(s) 133, 451
HhaI GCGC 1 cut(s) 387
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 7 cut(s) 277, 391, 439, 484, 592, 769, 906
Hin6I GCGC 1 cut(s) 385
HinP1I GCGC 1 cut(s) 385
HindIII AAGCTT 1 cut(s) 1234
HinfI GANTC 1 cut(s) 1101
HpaII CCGG 2 cut(s) 322, 1306
HphI GGTGA 2 cut(s) 424, 1295
Hpy188I TCNGA 4 cut(s) 132, 545, 670, 1186
Hpy188III TCNNGA 8 cut(s) 82, 190, 298, 322, 601, 861, 1105, 1140
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 6 cut(s) 20, 84, 166, 319, 376, 420
HpyCH4III ACNGT 5 cut(s) 261, 478, 718, 917, 1050
HpyCH4IV ACGT 1 cut(s) 331
HpyF10VI GCNNNNNNNGC 5 cut(s) 55, 468, 730, 802, 845
HpyF3I CTNAG 5 cut(s) 124, 441, 561, 615, 1245
HpySE526I ACGT 1 cut(s) 331
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 7 cut(s) 277, 391, 439, 484, 592, 769, 906
HspAI GCGC 1 cut(s) 385
Kpn2I TCCGGA 1 cut(s) 321
Ksp22I TGATCA 2 cut(s) 739, 1257
LguI GCTCTTC 1 cut(s) 786
LmnI GCTCC 2 cut(s) 503, 748
Lsp1109I GCAGC 7 cut(s) 42, 187, 322, 817, 835, 838, 1046
LweI GCATC 2 cut(s) 291, 1306
MaeI CTAG 6 cut(s) 50, 362, 782, 815, 893, 1161
MaeII ACGT 1 cut(s) 331
MaeIII GTNAC 4 cut(s) 261, 472, 524, 982
MflI RGATCY 3 cut(s) 689, 976, 1154
MhlI GDGCHC 1 cut(s) 220
MlsI TGGCCA 1 cut(s) 1331
MluCI AATT 7 cut(s) 511, 549, 677, 705, 993, 1111, 1188
MluNI TGGCCA 1 cut(s) 1331
MmeI TCCRAC 1 cut(s) 1126
MnlI CCTC 8 cut(s) 111, 194, 450, 547, 838, 864, 955, 1222
Mox20I TGGCCA 1 cut(s) 1331
Mph1103I ATGCAT 1 cut(s) 904
MroI TCCGGA 1 cut(s) 321
MroXI GAANNNNTTC 1 cut(s) 657
MscI TGGCCA 1 cut(s) 1331
MseI TTAA 5 cut(s) 680, 699, 933, 1115, 1405
MslI CAYNNNNRTG 2 cut(s) 719, 1073
Msp20I TGGCCA 1 cut(s) 1331
MspI CCGG 2 cut(s) 322, 1306
MspR9I CCNGG 1 cut(s) 868
Mva1269I GAATGC 2 cut(s) 393, 657
MvaI CCWGG 1 cut(s) 868
MwoI GCNNNNNNNGC 5 cut(s) 55, 468, 730, 802, 845
NdeI CATATG 1 cut(s) 879
NheI GCTAGC 2 cut(s) 361, 781
NlaIII CATG 7 cut(s) 277, 391, 439, 484, 592, 769, 906
NlaIV GGNNCC 3 cut(s) 218, 320, 978
NmuCI GTSAC 1 cut(s) 982
NsiI ATGCAT 1 cut(s) 904
NspI RCATGY 1 cut(s) 906
OliI CACNNNNGTG 1 cut(s) 719
PaeI GCATGC 1 cut(s) 906
PciSI GCTCTTC 1 cut(s) 786
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PctI GAATGC 2 cut(s) 393, 657
PdmI GAANNNNTTC 1 cut(s) 657
PfeI GAWTC 1 cut(s) 1101
PinAI ACCGGT 1 cut(s) 1305
PkrI GCNGC 7 cut(s) 57, 177, 337, 807, 850, 853, 1036
Psp6I CCWGG 1 cut(s) 866
PspFI CCCAGC 1 cut(s) 58
PspGI CCWGG 1 cut(s) 866
PspN4I GGNNCC 3 cut(s) 218, 320, 978
PspOMI GGGCCC 1 cut(s) 216
PspPI GGNCC 2 cut(s) 216, 217
PstI CTGCAG 1 cut(s) 177
PsuI RGATCY 3 cut(s) 689, 976, 1154
RsaI GTAC 3 cut(s) 107, 1202, 1250
RsaNI GTAC 3 cut(s) 106, 1201, 1249
RseI CAYNNNNRTG 2 cut(s) 719, 1073
SapI GCTCTTC 1 cut(s) 786
SaqAI TTAA 5 cut(s) 680, 699, 933, 1115, 1405
SatI GCNGC 7 cut(s) 56, 176, 336, 806, 849, 852, 1035
Sau96I GGNCC 2 cut(s) 216, 217
ScrFI CCNGG 1 cut(s) 868
SduI GDGCHC 1 cut(s) 220
SfaNI GCATC 2 cut(s) 291, 1306
SfcI CTRYAG 2 cut(s) 173, 520
SgrAI CRCCGGYG 1 cut(s) 1305
SmiMI CAYNNNNRTG 2 cut(s) 719, 1073
SphI GCATGC 1 cut(s) 906
Sse9I AATT 7 cut(s) 511, 549, 677, 705, 993, 1111, 1188
SsiI CCGC 1 cut(s) 68
SspMI CTAG 6 cut(s) 50, 362, 782, 815, 893, 1161
StyD4I CCNGG 1 cut(s) 866
StyI CCWWGG 1 cut(s) 573
TaaI ACNGT 5 cut(s) 261, 478, 718, 917, 1050
TaiI ACGT 1 cut(s) 334
TaqI TCGA 3 cut(s) 189, 600, 862
TasI AATT 7 cut(s) 511, 549, 677, 705, 993, 1111, 1188
TatI WGTACW 2 cut(s) 1200, 1248
TfiI GAWTC 1 cut(s) 1101
Tru1I TTAA 5 cut(s) 680, 699, 933, 1115, 1405
Tru9I TTAA 5 cut(s) 680, 699, 933, 1115, 1405
TscAI CASTG 2 cut(s) 721, 1339
TseFI GTSAC 1 cut(s) 982
TseI GCWGC 7 cut(s) 55, 175, 335, 805, 848, 851, 1034
Tsp45I GTSAC 1 cut(s) 982
TspDTI ATGAA 3 cut(s) 262, 1057, 1133
TspRI CASTG 2 cut(s) 721, 1339
XagI CCTNNNNNAGG 1 cut(s) 420
XceI RCATGY 1 cut(s) 906
XcmI CCANNNNNNNNNTGG 1 cut(s) 442
XmnI GAANNNNTTC 1 cut(s) 657
XspI CTAG 6 cut(s) 50, 362, 782, 815, 893, 1161
Zsp2I ATGCAT 1 cut(s) 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.